Wall clock time and date at job start Tue Mar 31 2020 06:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 N 1.29029 * 124.91082 * 90.00272 * 3 2 1 5 5 C 1.31784 * 117.11934 * 179.97438 * 4 3 2 6 6 C 1.50700 * 122.74599 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47594 * 144.97019 * 6 5 4 8 8 C 1.53003 * 109.46926 * 264.96678 * 6 5 4 9 9 N 1.46900 * 109.47672 * 24.96779 * 6 5 4 10 10 C 1.46895 * 111.00238 * 155.00034 * 9 6 5 11 11 C 1.53003 * 109.47121 * 180.02562 * 10 9 6 12 12 H 1.08995 * 109.47354 * 304.99944 * 11 10 9 13 13 C 1.53000 * 109.46864 * 65.00005 * 11 10 9 14 14 C 1.53000 * 109.46985 * 185.00091 * 11 10 9 15 15 C 1.50707 * 109.46826 * 175.00275 * 14 11 10 16 16 H 1.07992 * 120.00098 * 359.97438 * 15 14 11 17 17 C 1.37871 * 119.99607 * 180.02562 * 15 14 11 18 18 N 1.31517 * 119.99834 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00395 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47080 * 90.00388 * 19 17 15 21 21 H 1.48499 * 109.47255 * 210.00152 * 19 17 15 22 22 H 1.48499 * 109.47137 * 330.00503 * 19 17 15 23 23 C 1.33639 * 114.50435 * 359.97438 * 5 4 3 24 24 S 1.70976 * 124.91946 * 269.69503 * 3 2 1 25 25 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 26 26 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 27 27 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 29 29 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 30 30 H 1.09007 * 109.47502 * 179.97438 * 8 6 5 31 31 H 1.08995 * 109.47593 * 300.00418 * 8 6 5 32 32 H 1.09006 * 109.46771 * 60.00330 * 8 6 5 33 33 H 1.00903 * 110.99735 * 278.96068 * 9 6 5 34 34 H 1.08996 * 109.47037 * 300.00270 * 10 9 6 35 35 H 1.09006 * 109.47179 * 60.00518 * 10 9 6 36 36 H 1.09005 * 109.46765 * 179.97438 * 13 11 10 37 37 H 1.08993 * 109.47660 * 300.00278 * 13 11 10 38 38 H 1.09007 * 109.47070 * 60.00165 * 13 11 10 39 39 H 1.09006 * 109.47226 * 294.99999 * 14 11 10 40 40 H 1.08996 * 109.47032 * 55.00145 * 14 11 10 41 41 H 0.97007 * 120.00101 * 179.97438 * 18 17 15 42 42 H 1.07994 * 126.03803 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2785 2.1171 1.0581 5 6 2.7143 3.3479 0.8794 6 6 3.0414 4.2711 2.0247 7 1 3.8896 4.8998 1.7539 8 6 1.8296 5.1538 2.3304 9 7 3.3805 3.4765 3.2128 10 6 4.2441 4.2371 4.1259 11 6 4.5756 3.3784 5.3481 12 1 3.6512 3.0329 5.8110 13 6 5.4099 2.1721 4.9127 14 6 5.3703 4.2112 6.3560 15 6 5.5909 3.4053 7.6103 16 1 5.2028 2.4001 7.6815 17 6 6.2874 3.9520 8.6671 18 7 6.4796 3.2490 9.7619 19 14 6.9582 5.6911 8.5442 20 1 5.9401 6.6507 9.0419 21 1 8.1899 5.8058 9.3658 22 1 7.2779 5.9993 7.1271 23 6 2.8433 3.7099 -0.4005 24 16 2.3656 2.3411 -1.4019 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 2.0659 5.8213 3.1591 31 1 1.5779 5.7434 1.4489 32 1 0.9813 4.5251 2.6013 33 1 2.5474 3.1577 3.6844 34 1 5.1662 4.5086 3.6121 35 1 3.7268 5.1415 4.4464 36 1 5.6464 1.5606 5.7835 37 1 4.8438 1.5789 4.1946 38 1 6.3343 2.5177 4.4498 39 1 6.3337 4.4821 5.9241 40 1 4.8135 5.1162 6.5988 41 1 6.9700 3.6334 10.5054 42 1 3.1831 4.6707 -0.7579 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602553941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:57 Heat of formation + Delta-G solvation = -0.287232 kcal Electronic energy + Delta-G solvation = -19705.749438 eV Core-core repulsion = 16810.822644 eV Total energy + Delta-G solvation = -2894.926794 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.97918 -38.51286 -36.35419 -34.79472 -34.05312 -31.43322 -29.76713 -28.94224 -26.95887 -26.21493 -24.72510 -23.52573 -22.16718 -20.90869 -20.41501 -18.93203 -18.39323 -16.82815 -16.38563 -16.13349 -15.79361 -15.63325 -15.59700 -15.19319 -14.81107 -14.62876 -14.20797 -13.96210 -13.86585 -13.56307 -13.21295 -13.10529 -13.03796 -12.84598 -12.53457 -12.41740 -12.36890 -12.15325 -12.07557 -11.95307 -11.78776 -11.46132 -11.18579 -11.02861 -10.72957 -10.41089 -10.25381 -9.58805 -9.19897 -8.25503 -6.28031 -0.15922 0.52414 0.84041 1.35891 1.38213 1.50187 1.92827 2.38354 3.09600 3.16182 3.29642 3.87792 4.05862 4.17391 4.19475 4.25170 4.35408 4.37121 4.38489 4.47633 4.57197 4.71801 4.75671 4.81287 4.89772 4.95825 4.97599 5.00944 5.09222 5.10122 5.14767 5.27907 5.37170 5.38935 5.41676 5.55349 5.70569 5.73335 6.14618 6.35805 6.50540 6.79682 6.99935 7.35378 8.91521 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.028324 B = 0.003206 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.316866 B = 8730.836731 C = 9249.344755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 C 0.036 3.964 4 N -0.479 5.479 5 C 0.073 3.927 6 C 0.155 3.845 7 H 0.099 0.901 8 C -0.168 4.168 9 N -0.675 5.675 10 C 0.076 3.924 11 C -0.068 4.068 12 H 0.046 0.954 13 C -0.112 4.112 14 C -0.005 4.005 15 C -0.519 4.519 16 H 0.032 0.968 17 C 0.000 4.000 18 N -0.955 5.955 19 Si 0.950 3.050 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.246 1.246 23 C -0.269 4.269 24 S 0.137 5.863 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.343 0.657 34 H 0.070 0.930 35 H 0.034 0.966 36 H 0.025 0.975 37 H 0.058 0.942 38 H 0.042 0.958 39 H 0.019 0.981 40 H 0.017 0.983 41 H 0.264 0.736 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.720 0.883 -27.486 29.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.090 4.090 3 C -0.242 4.242 4 N -0.193 5.193 5 C -0.060 4.060 6 C 0.042 3.958 7 H 0.117 0.883 8 C -0.227 4.227 9 N -0.305 5.305 10 C -0.053 4.053 11 C -0.087 4.087 12 H 0.065 0.935 13 C -0.170 4.170 14 C -0.043 4.043 15 C -0.558 4.558 16 H 0.050 0.950 17 C -0.196 4.196 18 N -0.597 5.597 19 Si 0.774 3.226 20 H -0.192 1.192 21 H -0.212 1.212 22 H -0.169 1.169 23 C -0.408 4.408 24 S 0.392 5.608 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.123 0.877 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.161 0.839 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.037 0.963 40 H 0.035 0.965 41 H 0.073 0.927 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -11.250 0.122 -28.212 30.373 hybrid contribution 0.075 1.581 1.913 2.483 sum -11.175 1.703 -26.299 28.625 Atomic orbital electron populations 1.21721 0.92782 1.03418 1.01953 1.20344 0.97279 0.86545 1.04823 1.27578 1.02673 1.02856 0.91081 1.66039 1.14798 1.06172 1.32326 1.20321 1.00136 0.91318 0.94213 1.20102 0.97668 0.90391 0.87595 0.88345 1.22388 0.97635 0.99826 1.02840 1.60307 1.22394 1.39610 1.08211 1.21948 0.96774 0.94236 0.92319 1.20862 0.97934 0.95917 0.94024 0.93519 1.21453 0.98846 0.97532 0.99120 1.19554 0.95775 0.95348 0.93592 1.21463 1.33975 1.00803 0.99510 0.94999 1.26031 0.96314 1.02555 0.94723 1.70085 1.43513 1.39744 1.06332 0.85658 0.78027 0.79477 0.79469 1.19205 1.21222 1.16911 1.27007 1.12837 1.05550 0.95439 1.83632 1.60327 1.04857 1.11974 0.93709 0.91894 0.89762 0.87719 0.89635 0.91717 0.90492 0.93102 0.83874 0.91167 0.94832 0.95570 0.92285 0.93921 0.96310 0.96507 0.92687 0.78737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.89 71.98 0.71 -1.10 16 2 C -0.05 -0.75 6.52 29.85 0.19 -0.56 16 3 C 0.04 0.75 6.64 88.52 0.59 1.34 16 4 N -0.48 -12.53 10.14 -179.39 -1.82 -14.34 16 5 C 0.07 1.72 5.80 41.52 0.24 1.96 16 6 C 0.16 3.60 2.93 44.17 0.13 3.73 16 7 H 0.10 2.10 7.80 -2.39 -0.02 2.08 16 8 C -0.17 -3.32 9.14 71.98 0.66 -2.66 16 9 N -0.67 -19.38 5.39 -495.44 -2.67 -22.06 16 10 C 0.08 2.40 4.87 86.31 0.42 2.82 16 11 C -0.07 -2.75 2.48 -10.79 -0.03 -2.78 16 12 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 13 C -0.11 -4.56 8.89 71.98 0.64 -3.92 16 14 C 0.00 -0.23 3.52 29.85 0.10 -0.12 16 15 C -0.52 -30.60 8.96 25.60 0.23 -30.37 16 16 H 0.03 2.08 7.30 -2.91 -0.02 2.06 16 17 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 18 N -0.96 -61.44 13.96 21.45 0.30 -61.14 16 19 Si 0.95 45.13 27.47 68.60 1.88 47.01 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 23 C -0.27 -5.00 11.14 66.78 0.74 -4.26 16 24 S 0.14 2.23 23.18 -56.49 -1.31 0.92 16 25 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.28 7.45 -2.38 -0.02 1.26 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.10 8.13 -2.38 -0.02 1.08 16 33 H 0.34 10.22 8.47 -89.69 -0.76 9.46 16 34 H 0.07 2.16 8.05 -2.39 -0.02 2.14 16 35 H 0.03 1.00 7.44 -2.38 -0.02 0.98 16 36 H 0.03 1.19 6.95 -2.38 -0.02 1.17 16 37 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16 38 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.02 0.88 7.20 -2.38 -0.02 0.86 16 40 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 41 H 0.26 15.85 8.31 -92.70 -0.77 15.08 16 42 H 0.20 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -69.75 352.77 1.65 -68.10 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.17 Total: 16.98 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: 5.10 Total: -35.47 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -4.19 Total: -97.54 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -1.31 Total: 0.92 kcal Total: -69.75 1.65 -68.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602553941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.811 kcal (2) G-P(sol) polarization free energy of solvation -69.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds