Wall clock time and date at job start Tue Mar 31 2020 05:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47059 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.47300 * 180.02562 * 16 15 14 18 18 C 1.34949 * 126.03711 * 124.99776 * 17 16 15 19 19 C 1.35315 * 107.74437 * 179.97438 * 18 17 16 20 20 N 1.48019 * 126.03602 * 179.97438 * 19 18 17 21 21 O 1.21793 * 120.00705 * 0.02562 * 20 19 18 22 22 O 1.21803 * 119.99615 * 180.02562 * 20 19 18 23 23 C 1.39871 * 107.92038 * 0.02562 * 19 18 17 24 24 N 1.30837 * 108.20187 * 359.73849 * 23 19 18 25 25 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 27 27 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 28 28 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 29 29 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 30 30 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 31 31 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 32 32 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 33 33 H 1.00902 * 111.00152 * 56.04664 * 14 13 2 34 34 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 35 35 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 36 36 H 1.09008 * 109.47237 * 300.00217 * 16 15 14 37 37 H 1.08999 * 109.47484 * 59.99634 * 16 15 14 38 38 H 1.07999 * 126.12421 * 359.97438 * 18 17 16 39 39 H 1.07994 * 125.89672 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7025 0.1904 -4.8892 17 7 2.1751 -0.4721 -6.1074 18 6 1.4124 -0.8389 -7.1585 19 6 2.2234 -1.4165 -8.0749 20 7 1.8054 -1.9667 -9.3839 21 8 0.6351 -1.9213 -9.7180 22 8 2.6320 -2.4650 -10.1269 23 6 3.5262 -1.4026 -7.5661 24 7 3.4993 -0.8321 -6.3890 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.1263 -0.7995 1.2057 29 1 1.6053 -1.7197 1.2953 30 1 2.9286 -2.0221 3.0617 31 1 3.1263 -0.7997 -1.2054 32 1 1.6053 -1.7200 -1.2950 33 1 1.9883 0.9871 -2.3967 34 1 3.2127 -0.7042 -3.6399 35 1 1.6921 -1.6250 -3.7299 36 1 0.6155 0.2673 -4.9162 37 1 2.1358 1.1886 -4.8266 38 1 0.3459 -0.6969 -7.2516 39 1 4.4035 -1.7920 -8.0611 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602571210.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:29 Heat of formation + Delta-G solvation = 55.960970 kcal Electronic energy + Delta-G solvation = -20835.295219 eV Core-core repulsion = 17396.514316 eV Total energy + Delta-G solvation = -3438.780903 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.78210 -41.68628 -37.56931 -36.73887 -35.40361 -33.60376 -32.05288 -31.72781 -29.19906 -26.59842 -26.29028 -25.15398 -23.52838 -22.39170 -22.01665 -21.66443 -19.68516 -19.23559 -18.71688 -17.81350 -17.19984 -16.75647 -16.28832 -15.91098 -15.35629 -14.54827 -14.28636 -14.08968 -13.94647 -13.73621 -13.23850 -12.92284 -12.27111 -12.15836 -11.90086 -11.80551 -11.71841 -11.47032 -11.37479 -11.31872 -11.10067 -10.76163 -10.56833 -10.37857 -10.14775 -9.99490 -9.94871 -9.58232 -8.59302 -8.55368 -8.36575 -6.39097 -4.08064 -0.07700 0.84747 0.95463 1.73906 1.84453 3.40361 3.42102 3.43087 3.60898 3.79762 4.03599 4.11194 4.31691 4.49535 4.52016 4.55022 4.68530 5.15641 5.26538 5.36115 5.39588 5.45113 5.59462 5.76951 5.87143 6.11019 6.12710 6.24852 6.41288 6.50953 6.68682 6.86804 6.92909 7.02314 7.20803 7.31619 7.42783 7.47929 8.17929 8.42675 8.85047 9.63611 11.01172 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.052724 B = 0.002167 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.940849 B =12920.419189 C =13109.275198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.075 4.075 3 H 0.056 0.944 4 C 0.014 3.986 5 C -0.595 4.595 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.914 5.914 9 Si 1.068 2.932 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.288 1.288 13 C 0.065 3.935 14 N -0.683 5.683 15 C 0.045 3.955 16 C 0.127 3.873 17 N -0.340 5.340 18 C 0.158 3.842 19 C -0.198 4.198 20 N 0.071 4.929 21 O -0.176 6.176 22 O -0.165 6.165 23 C 0.113 3.887 24 N -0.264 5.264 25 H 0.039 0.961 26 H 0.057 0.943 27 H 0.043 0.957 28 H 0.003 0.997 29 H 0.007 0.993 30 H 0.268 0.732 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.341 0.659 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.206 0.794 39 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.846 3.199 -22.612 22.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.094 4.094 3 H 0.075 0.925 4 C -0.024 4.024 5 C -0.634 4.634 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.550 5.550 9 Si 0.896 3.104 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.214 1.214 13 C -0.063 4.063 14 N -0.315 5.315 15 C -0.085 4.085 16 C 0.007 3.993 17 N -0.118 5.118 18 C 0.003 3.997 19 C -0.296 4.296 20 N 0.587 4.413 21 O -0.387 6.387 22 O -0.379 6.379 23 C -0.077 4.077 24 N -0.084 5.084 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.022 0.978 29 H 0.026 0.974 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.159 0.841 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.137 0.863 37 H 0.118 0.882 38 H 0.223 0.777 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -1.554 3.633 -19.182 19.585 hybrid contribution 0.324 -0.246 -2.682 2.712 sum -1.230 3.387 -21.864 22.159 Atomic orbital electron populations 1.21593 0.95361 1.00656 1.00420 1.21077 0.96240 0.98902 0.93210 0.92511 1.19254 0.95176 0.95666 0.92287 1.22003 1.38816 1.10336 0.92214 0.93171 1.25846 0.94684 0.97131 1.01446 1.70790 1.36136 1.14636 1.33481 0.83560 0.76084 0.75119 0.75641 1.20814 1.21500 1.21437 1.22198 0.97519 0.97708 0.88922 1.60500 1.63796 1.06086 1.01101 1.22128 0.99283 0.98270 0.88808 1.22152 1.01528 0.96253 0.79346 1.48953 1.05231 1.43072 1.14568 1.22433 0.99363 0.91975 0.85964 1.21070 0.96108 1.21475 0.90948 1.42454 1.00382 0.97746 1.00748 1.94553 1.02193 1.62707 1.79245 1.94556 1.48553 1.45668 1.49157 1.24020 0.96533 0.95611 0.91527 1.77813 0.96607 1.18554 1.15403 0.94183 0.92437 0.93839 0.97838 0.97445 0.92203 0.95355 0.91328 0.84098 0.93454 0.90339 0.86301 0.88172 0.77681 0.77342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.22 8.89 37.16 0.33 -1.89 16 2 C -0.08 -1.43 2.48 -90.62 -0.22 -1.65 16 3 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 4 C 0.01 0.33 3.76 -27.88 -0.10 0.23 16 5 C -0.60 -16.38 8.41 -34.44 -0.29 -16.67 16 6 H 0.05 1.35 7.06 -52.49 -0.37 0.98 16 7 C 0.01 0.35 5.46 -17.82 -0.10 0.26 16 8 N -0.91 -27.74 13.65 55.43 0.76 -26.99 16 9 Si 1.07 24.92 29.90 -169.99 -5.08 19.84 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.06 0.99 5.07 -3.82 -0.02 0.97 16 14 N -0.68 -7.71 5.96 -113.78 -0.68 -8.39 16 15 C 0.05 0.42 5.87 -3.82 -0.02 0.39 16 16 C 0.13 0.78 6.77 -4.04 -0.03 0.75 16 17 N -0.34 -2.54 3.68 -61.36 -0.23 -2.76 16 18 C 0.16 1.06 11.13 -17.22 -0.19 0.87 16 19 C -0.20 -1.75 7.11 -80.38 -0.57 -2.32 16 20 N 0.07 0.78 4.45 33.75 0.15 0.93 16 21 O -0.18 -2.04 19.02 -29.46 -0.56 -2.60 16 22 O -0.17 -1.96 19.05 -29.46 -0.56 -2.52 16 23 C 0.11 0.92 11.75 -17.36 -0.20 0.72 16 24 N -0.26 -2.45 12.42 30.62 0.38 -2.07 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.14 6.95 -51.93 -0.36 0.78 16 27 H 0.04 0.67 7.75 -51.93 -0.40 0.27 16 28 H 0.00 0.09 8.01 -51.93 -0.42 -0.33 16 29 H 0.01 0.19 8.00 -51.93 -0.42 -0.23 16 30 H 0.27 8.08 7.22 -40.82 -0.29 7.79 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.34 3.49 8.73 -39.29 -0.34 3.15 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.12 0.49 8.07 -51.92 -0.42 0.07 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.21 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.21 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 341.06 15.07 5.14 5.14 Total: -1.00 -32.61 341.06 -7.73 -40.34 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -5.62 Total: -2.57 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -1.42 Total: -18.34 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.38 Total: -39.28 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -1.12 Total: -5.12 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.61 -7.73 -40.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602571210.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.298 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds