Wall clock time and date at job start Tue Mar 31 2020 05:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47327 * 2 1 4 4 C 1.52997 * 109.47022 * 239.99474 * 2 1 3 5 5 C 1.50708 * 109.47042 * 65.00504 * 4 2 1 6 6 H 1.08004 * 119.99423 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99854 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00179 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99744 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47411 * 59.99456 * 9 7 5 11 11 H 1.48493 * 109.47095 * 179.97438 * 9 7 5 12 12 H 1.48512 * 109.46722 * 299.99481 * 9 7 5 13 13 C 1.53004 * 109.46921 * 120.00028 * 2 1 3 14 14 N 1.46901 * 109.46916 * 294.99594 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47039 * 180.02562 * 15 14 13 17 17 N 1.46502 * 109.47345 * 180.02562 * 16 15 14 18 18 C 1.34950 * 126.04238 * 124.99574 * 17 16 15 19 19 C 1.35312 * 107.75086 * 179.97438 * 18 17 16 20 20 N 1.48018 * 126.04139 * 179.97438 * 19 18 17 21 21 O 1.21801 * 119.99792 * 0.02562 * 20 19 18 22 22 O 1.21799 * 119.99791 * 179.97438 * 20 19 18 23 23 C 1.39878 * 107.91725 * 0.02562 * 19 18 17 24 24 N 1.30836 * 108.20068 * 359.73955 * 23 19 18 25 25 H 1.09010 * 109.47245 * 300.00418 * 1 2 3 26 26 H 1.08999 * 109.47135 * 59.99761 * 1 2 3 27 27 H 1.08997 * 109.47560 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47139 * 185.00096 * 4 2 1 29 29 H 1.09001 * 109.47414 * 305.00040 * 4 2 1 30 30 H 0.97000 * 119.99957 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.46889 * 174.99975 * 13 2 1 32 32 H 1.08995 * 109.47384 * 54.99615 * 13 2 1 33 33 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 34 34 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 35 35 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 36 36 H 1.09001 * 109.47393 * 299.99719 * 16 15 14 37 37 H 1.08998 * 109.47408 * 60.00073 * 16 15 14 38 38 H 1.08006 * 126.12087 * 359.97438 * 18 17 16 39 39 H 1.07993 * 125.89837 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0799 0.9741 -2.3757 7 6 1.9923 -0.4024 -3.7283 8 7 2.6753 -1.5195 -3.8511 9 14 1.4988 0.5627 -5.2496 10 1 2.0919 1.9226 -5.1872 11 1 1.9936 -0.1375 -6.4620 12 1 0.0188 0.6703 -5.3090 13 6 2.0399 -0.7213 1.2493 14 7 1.6513 0.0375 2.4456 15 6 2.1257 -0.6265 3.6672 16 6 1.7023 0.1910 4.8892 17 7 2.1758 -0.4708 6.1074 18 6 2.9406 0.0882 7.0686 19 6 3.1577 -0.8491 8.0201 20 7 3.9485 -0.6666 9.2579 21 8 4.4744 0.4068 9.4919 22 8 4.0727 -1.5897 10.0429 23 6 2.5036 -2.0213 7.6267 24 7 1.9104 -1.7940 6.4829 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1263 -0.7996 -1.2055 29 1 1.6053 -1.7199 -1.2950 30 1 2.9226 -1.8425 -4.7317 31 1 3.1262 -0.7995 1.2056 32 1 1.6052 -1.7198 1.2953 33 1 1.9882 0.9873 2.3966 34 1 1.6919 -1.6245 3.7301 35 1 3.2126 -0.7037 3.6401 36 1 2.1357 1.1892 4.8266 37 1 0.6154 0.2679 4.9161 38 1 3.3128 1.1020 7.0769 39 1 2.4876 -2.9518 8.1744 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602571211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:33 Heat of formation + Delta-G solvation = 59.965084 kcal Electronic energy + Delta-G solvation = -20798.195665 eV Core-core repulsion = 17359.588393 eV Total energy + Delta-G solvation = -3438.607272 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.75676 -41.66309 -37.48136 -36.72174 -35.27528 -33.43114 -31.99548 -31.70401 -29.20782 -26.92802 -26.25276 -25.15023 -23.56336 -22.34106 -21.97985 -21.59653 -19.51605 -19.11406 -18.69904 -17.79727 -17.10970 -16.57892 -16.38074 -15.41954 -15.34073 -14.70753 -14.37226 -14.13957 -13.99568 -13.82883 -12.96769 -12.60310 -12.35256 -12.21939 -11.83773 -11.73354 -11.62624 -11.42551 -11.35929 -11.29213 -10.91572 -10.85541 -10.53938 -10.38861 -10.38146 -9.95628 -9.82838 -9.27325 -9.06909 -8.51303 -8.39845 -6.04520 -4.06385 -0.05885 0.87334 0.98579 1.76668 1.87127 3.29144 3.34178 3.35935 3.46647 3.80717 4.06407 4.09807 4.41523 4.44518 4.50181 4.58059 4.73829 5.19900 5.31057 5.32612 5.42470 5.57454 5.68810 5.81075 5.98642 6.12987 6.24122 6.36350 6.51972 6.54667 6.79743 6.98636 7.03850 7.12893 7.31025 7.44556 7.59438 7.74258 7.94445 8.37495 8.99551 9.57414 11.06898 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.048294 B = 0.002156 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.637909 B =12985.592586 C =13028.750898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.082 4.082 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.066 3.934 14 N -0.683 5.683 15 C 0.046 3.954 16 C 0.127 3.873 17 N -0.339 5.339 18 C 0.155 3.845 19 C -0.198 4.198 20 N 0.071 4.929 21 O -0.177 6.177 22 O -0.165 6.165 23 C 0.112 3.888 24 N -0.260 5.260 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.012 0.988 29 H 0.017 0.983 30 H 0.261 0.739 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.339 0.661 34 H 0.089 0.911 35 H 0.035 0.965 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.205 0.795 39 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.711 3.310 22.181 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.101 4.101 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.554 4.554 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 C -0.063 4.063 14 N -0.314 5.314 15 C -0.084 4.084 16 C 0.007 3.993 17 N -0.117 5.117 18 C -0.001 4.001 19 C -0.296 4.296 20 N 0.587 4.413 21 O -0.388 6.388 22 O -0.379 6.379 23 C -0.078 4.078 24 N -0.080 5.080 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.031 0.969 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.157 0.843 34 H 0.108 0.892 35 H 0.053 0.947 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.222 0.778 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.430 2.403 20.390 20.674 hybrid contribution 1.500 1.010 -0.032 1.809 sum -0.931 3.414 20.357 20.662 Atomic orbital electron populations 1.21602 0.95566 1.00719 1.00229 1.21215 0.96119 0.98933 0.93834 0.92694 1.19122 0.95922 0.95634 0.90359 1.21170 1.34906 1.08352 0.90936 0.92586 1.25027 0.95276 0.95091 0.99159 1.69948 1.38863 1.21166 1.23602 0.86673 0.78925 0.80066 0.82423 1.20299 1.21337 1.20225 1.22200 0.97492 0.97816 0.88752 1.60497 1.63826 1.05936 1.01161 1.22147 0.98228 0.99280 0.88760 1.22164 1.02559 0.95429 0.79172 1.48974 1.36304 1.09283 1.17156 1.22418 0.90832 0.99778 0.87040 1.21069 1.15613 0.99029 0.93867 1.42459 0.98298 1.00087 1.00484 1.94552 1.48759 1.14352 1.81148 1.94555 1.65911 1.34575 1.42875 1.24031 0.92642 0.98353 0.92767 1.77835 1.22351 0.94063 1.13730 0.94000 0.92589 0.94058 0.96929 0.96496 0.92959 0.95379 0.91153 0.84341 0.89239 0.94680 0.87422 0.87044 0.77794 0.77329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.22 8.89 37.15 0.33 -1.89 16 2 C -0.08 -1.54 2.48 -90.62 -0.22 -1.76 16 3 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.03 0.67 4.45 -27.88 -0.12 0.54 16 5 C -0.52 -13.98 8.41 -34.44 -0.29 -14.27 16 6 H 0.06 1.47 7.06 -52.48 -0.37 1.10 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.07 1.00 5.07 -3.82 -0.02 0.98 16 14 N -0.68 -7.71 5.96 -113.78 -0.68 -8.39 16 15 C 0.05 0.43 5.87 -3.82 -0.02 0.40 16 16 C 0.13 0.78 6.77 -4.04 -0.03 0.75 16 17 N -0.34 -2.55 3.68 -61.37 -0.23 -2.78 16 18 C 0.15 1.04 11.13 -17.22 -0.19 0.85 16 19 C -0.20 -1.75 7.11 -80.38 -0.57 -2.32 16 20 N 0.07 0.78 4.45 33.75 0.15 0.93 16 21 O -0.18 -2.06 19.02 -29.46 -0.56 -2.62 16 22 O -0.17 -1.96 19.05 -29.46 -0.56 -2.52 16 23 C 0.11 0.92 11.75 -17.36 -0.20 0.72 16 24 N -0.26 -2.44 12.42 30.62 0.38 -2.06 16 25 H 0.04 0.65 7.75 -51.92 -0.40 0.24 16 26 H 0.06 1.09 6.95 -51.93 -0.36 0.73 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.01 0.33 8.14 -51.92 -0.42 -0.10 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.34 3.33 8.73 -39.29 -0.34 2.98 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.11 0.36 8.07 -51.93 -0.42 -0.06 16 37 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.21 0.68 8.06 -52.48 -0.42 0.25 16 39 H 0.21 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 342.37 15.07 5.16 5.16 Total: -1.00 -31.90 342.37 -7.74 -39.65 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -5.68 Total: -3.30 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -1.44 Total: -14.54 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.36 Total: -38.02 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -1.12 Total: -5.14 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.90 -7.74 -39.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602571211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.611 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds