Wall clock time and date at job start Tue Mar 31 2020 06:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33635 * 126.03463 * 2 1 4 4 N 1.31788 * 114.49833 * 180.02562 * 3 2 1 5 5 C 1.29022 * 117.12257 * 359.97438 * 4 3 2 6 6 C 1.50708 * 124.91480 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47090 * 64.97793 * 6 5 4 8 8 C 1.52996 * 109.47048 * 184.97591 * 6 5 4 9 9 N 1.46896 * 109.46996 * 304.97711 * 6 5 4 10 10 C 1.46898 * 111.00043 * 180.02562 * 9 6 5 11 11 C 1.53000 * 109.47359 * 179.97438 * 10 9 6 12 12 H 1.08999 * 109.47398 * 304.99951 * 11 10 9 13 13 C 1.53007 * 109.47128 * 64.99603 * 11 10 9 14 14 C 1.53000 * 109.47427 * 184.99374 * 11 10 9 15 15 C 1.50697 * 109.47159 * 174.99538 * 14 11 10 16 16 H 1.07996 * 120.00298 * 0.02562 * 15 14 11 17 17 C 1.37883 * 119.99904 * 179.97438 * 15 14 11 18 18 N 1.31513 * 119.99961 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99772 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47324 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46979 * 120.00774 * 19 17 15 22 22 H 1.48502 * 109.46921 * 240.00605 * 19 17 15 23 23 S 1.70974 * 110.16863 * 359.72809 * 5 4 3 24 24 H 1.09002 * 109.47152 * 90.02391 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02492 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02473 * 1 2 3 27 27 H 1.08000 * 122.75360 * 0.02562 * 3 2 1 28 28 H 1.08991 * 109.47396 * 59.99724 * 7 6 5 29 29 H 1.09001 * 109.46649 * 180.02562 * 7 6 5 30 30 H 1.09007 * 109.46943 * 300.00033 * 7 6 5 31 31 H 1.09008 * 109.47053 * 59.99956 * 8 6 5 32 32 H 1.09001 * 109.47080 * 179.97438 * 8 6 5 33 33 H 1.08999 * 109.47559 * 300.00083 * 8 6 5 34 34 H 1.00898 * 111.00359 * 303.95679 * 9 6 5 35 35 H 1.09000 * 109.46669 * 299.99583 * 10 9 6 36 36 H 1.08998 * 109.47667 * 59.99792 * 10 9 6 37 37 H 1.09002 * 109.46922 * 60.00399 * 13 11 10 38 38 H 1.08998 * 109.47411 * 179.97438 * 13 11 10 39 39 H 1.08998 * 109.47175 * 299.99988 * 13 11 10 40 40 H 1.08997 * 109.47343 * 295.00574 * 14 11 10 41 41 H 1.09006 * 109.46705 * 55.00107 * 14 11 10 42 42 H 0.96996 * 119.99738 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8171 -0.0005 5 6 3.9311 -0.4257 -0.0005 6 6 5.3532 -0.9245 -0.0005 7 6 6.0364 -0.5175 1.3066 8 6 5.3588 -2.4493 -0.1255 9 7 6.0780 -0.3374 -1.1353 10 6 7.4710 -0.8027 -1.1678 11 6 8.1917 -0.1719 -2.3609 12 1 7.6396 -0.3891 -3.2753 13 6 8.2755 1.3430 -2.1634 14 6 9.6039 -0.7510 -2.4681 15 6 10.2702 -0.2230 -3.7124 16 1 9.7398 0.4578 -4.3616 17 6 11.5575 -0.6083 -4.0215 18 7 12.2036 -1.4370 -3.2307 19 14 12.3837 0.0468 -5.5634 20 1 11.4511 0.9560 -6.2766 21 1 13.6116 0.7928 -5.1882 22 1 12.7454 -1.0875 -6.4511 23 16 2.5436 -1.4247 0.0079 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 0.8902 0.5135 26 1 -0.3633 -0.8898 0.5142 27 1 1.9024 2.0875 0.0004 28 1 5.4987 -0.9530 2.1486 29 1 7.0651 -0.8779 1.3063 30 1 6.0324 0.5689 1.3957 31 1 4.8720 -2.7393 -1.0567 32 1 6.3874 -2.8101 -0.1260 33 1 4.8210 -2.8850 0.7165 34 1 5.6097 -0.5380 -2.0063 35 1 7.9726 -0.5122 -0.2448 36 1 7.4894 -1.8882 -1.2652 37 1 8.8277 1.5602 -1.2491 38 1 8.7893 1.7924 -3.0131 39 1 7.2695 1.7556 -2.0871 40 1 10.1840 -0.4582 -1.5930 41 1 9.5477 -1.8384 -2.5196 42 1 13.1091 -1.7083 -3.4483 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602574124.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:33 Heat of formation + Delta-G solvation = 22.894477 kcal Electronic energy + Delta-G solvation = -19960.417794 eV Core-core repulsion = 17066.496234 eV Total energy + Delta-G solvation = -2893.921560 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.98447 -38.01371 -35.13068 -32.76181 -32.13324 -30.01385 -27.51506 -27.30231 -26.69542 -25.26600 -24.25442 -22.67688 -20.77737 -19.24649 -18.79723 -17.83499 -16.31796 -15.77863 -15.30511 -14.95022 -14.57095 -14.43384 -14.25756 -13.69787 -13.49520 -13.16080 -13.01803 -12.79729 -12.57423 -12.41985 -12.25148 -11.83280 -11.68789 -11.38123 -11.33308 -11.20164 -11.07548 -10.82649 -10.67855 -10.24058 -10.18491 -9.64603 -9.56975 -9.30877 -9.11837 -8.95451 -8.82666 -8.30599 -8.08970 -5.95456 -3.95999 0.59105 1.20165 1.64736 2.79438 3.33850 3.41458 3.45953 3.97770 4.36868 4.51967 4.70129 4.76715 4.88439 4.98796 5.08569 5.17135 5.40563 5.44174 5.48333 5.56397 5.62365 5.67303 5.78191 5.85027 5.88304 6.01017 6.10845 6.23763 6.32675 6.49243 6.60272 6.76211 7.06533 7.23189 7.25446 7.36171 7.62610 7.72745 7.76871 7.88785 8.05332 8.49873 9.10665 9.67317 11.16177 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.034740 B = 0.003171 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.782889 B = 8827.624150 C = 9085.721516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.236 4.236 3 C 0.033 3.967 4 N -0.445 5.445 5 C 0.068 3.932 6 C 0.189 3.811 7 C -0.132 4.132 8 C -0.194 4.194 9 N -0.661 5.661 10 C 0.060 3.940 11 C -0.081 4.081 12 H 0.052 0.948 13 C -0.123 4.123 14 C 0.028 3.972 15 C -0.510 4.510 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 S 0.108 5.892 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.171 0.829 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.338 0.662 35 H 0.073 0.927 36 H 0.030 0.970 37 H 0.039 0.961 38 H 0.052 0.948 39 H 0.043 0.957 40 H 0.016 0.984 41 H 0.012 0.988 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.520 -0.617 9.295 24.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.357 4.357 3 C -0.118 4.118 4 N -0.157 5.157 5 C -0.211 4.211 6 C 0.094 3.906 7 C -0.191 4.191 8 C -0.254 4.254 9 N -0.292 5.292 10 C -0.068 4.068 11 C -0.100 4.100 12 H 0.071 0.929 13 C -0.180 4.180 14 C -0.010 4.010 15 C -0.549 4.549 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 S 0.364 5.636 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.188 0.812 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.156 0.844 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.035 0.965 41 H 0.030 0.970 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.954 -0.771 9.658 23.997 hybrid contribution 0.098 0.251 -1.216 1.245 sum -21.856 -0.520 8.442 23.435 Atomic orbital electron populations 1.20193 0.87017 1.03159 1.02806 1.26039 1.01510 0.95584 1.12583 1.21788 0.87131 0.99966 1.02925 1.66185 1.16778 1.18659 1.14092 1.27068 0.99639 0.91082 1.03339 1.19394 0.85200 0.91078 0.94898 1.21850 1.00410 1.03250 0.93617 1.22714 1.04191 0.96019 1.02485 1.60632 1.02881 1.61363 1.04326 1.22316 0.86757 0.96847 1.00910 1.21193 0.98332 0.95785 0.94687 0.92941 1.21585 0.99733 0.95832 1.00854 1.19122 0.89191 0.95596 0.97072 1.21282 0.98648 1.27082 1.07856 0.92531 1.25019 0.97527 0.95300 0.96744 1.69973 1.12091 1.34191 1.37490 0.86584 0.79498 0.78749 0.83477 1.19750 1.21099 1.21150 1.83945 0.99051 1.11601 1.69048 0.90675 0.90396 0.91305 0.81155 0.92716 0.91053 0.90797 0.91949 0.89842 0.91755 0.84404 0.90907 0.95214 0.94184 0.92917 0.93758 0.96529 0.96961 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.42 36.01 0.38 -0.09 16 2 C -0.24 -2.32 6.60 -35.92 -0.24 -2.56 16 3 C 0.03 0.38 11.25 -19.18 -0.22 0.16 16 4 N -0.45 -6.26 10.54 -11.86 -0.13 -6.38 16 5 C 0.07 0.87 6.02 -13.45 -0.08 0.79 16 6 C 0.19 2.44 0.93 -132.75 -0.12 2.32 16 7 C -0.13 -1.67 8.22 37.16 0.31 -1.37 16 8 C -0.19 -2.18 7.30 37.16 0.27 -1.90 16 9 N -0.66 -9.95 5.53 -101.14 -0.56 -10.51 16 10 C 0.06 1.01 4.29 -3.83 -0.02 1.00 16 11 C -0.08 -1.66 2.48 -90.62 -0.22 -1.89 16 12 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 13 C -0.12 -2.46 8.89 37.16 0.33 -2.13 16 14 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 15 C -0.51 -14.39 8.41 -34.44 -0.29 -14.68 16 16 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 19 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 S 0.11 1.12 21.59 -107.50 -2.32 -1.20 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.17 1.56 8.06 -52.49 -0.42 1.13 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.90 6.40 -51.93 -0.33 0.57 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.68 8.03 -51.92 -0.42 0.26 16 32 H 0.08 0.98 6.40 -51.93 -0.33 0.65 16 33 H 0.06 0.62 7.81 -51.93 -0.41 0.22 16 34 H 0.34 5.06 8.71 -39.29 -0.34 4.72 16 35 H 0.07 1.25 6.30 -51.93 -0.33 0.93 16 36 H 0.03 0.50 6.30 -51.93 -0.33 0.17 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 39 H 0.04 0.82 7.75 -51.93 -0.40 0.42 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 347.89 15.07 5.24 5.24 Total: -1.00 -31.01 347.89 -9.15 -40.16 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.98 Total: 0.45 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -0.13 Total: -18.28 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.05 Total: -43.24 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.32 Total: -1.20 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.01 -9.15 -40.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602574124.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.055 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds