Wall clock time and date at job start Tue Mar 31 2020 06:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33635 * 126.03463 * 2 1 4 4 N 1.31788 * 114.49833 * 180.02562 * 3 2 1 5 5 C 1.29022 * 117.12257 * 359.97438 * 4 3 2 6 6 C 1.50708 * 124.91480 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47090 * 64.97793 * 6 5 4 8 8 C 1.52996 * 109.47048 * 184.97591 * 6 5 4 9 9 N 1.46896 * 109.46996 * 304.97711 * 6 5 4 10 10 C 1.46898 * 111.00043 * 180.02562 * 9 6 5 11 11 C 1.53000 * 109.47359 * 179.97438 * 10 9 6 12 12 H 1.09005 * 109.46995 * 54.99378 * 11 10 9 13 13 C 1.53000 * 109.47348 * 294.99957 * 11 10 9 14 14 C 1.52994 * 109.47425 * 174.99626 * 11 10 9 15 15 C 1.50707 * 109.47506 * 184.99936 * 14 11 10 16 16 H 1.08003 * 119.99670 * 0.02562 * 15 14 11 17 17 C 1.37878 * 119.99976 * 179.97438 * 15 14 11 18 18 N 1.31505 * 119.99872 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99609 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47301 * 60.00337 * 19 17 15 21 21 H 1.48500 * 109.47290 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47495 * 300.00097 * 19 17 15 23 23 S 1.70974 * 110.16863 * 359.72809 * 5 4 3 24 24 H 1.09002 * 109.47152 * 90.02391 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02492 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02473 * 1 2 3 27 27 H 1.08000 * 122.75360 * 0.02562 * 3 2 1 28 28 H 1.08991 * 109.47396 * 59.99724 * 7 6 5 29 29 H 1.09001 * 109.46649 * 180.02562 * 7 6 5 30 30 H 1.09007 * 109.46943 * 300.00033 * 7 6 5 31 31 H 1.09008 * 109.47053 * 59.99956 * 8 6 5 32 32 H 1.09001 * 109.47080 * 179.97438 * 8 6 5 33 33 H 1.08999 * 109.47559 * 300.00083 * 8 6 5 34 34 H 1.00898 * 111.00359 * 303.95679 * 9 6 5 35 35 H 1.09000 * 109.46669 * 299.99583 * 10 9 6 36 36 H 1.08998 * 109.47667 * 59.99792 * 10 9 6 37 37 H 1.09000 * 109.46833 * 59.99694 * 13 11 10 38 38 H 1.08998 * 109.47150 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.46713 * 300.00388 * 13 11 10 40 40 H 1.09007 * 109.47435 * 304.99971 * 14 11 10 41 41 H 1.09003 * 109.47260 * 64.99869 * 14 11 10 42 42 H 0.97005 * 119.99939 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8171 -0.0005 5 6 3.9311 -0.4257 -0.0005 6 6 5.3532 -0.9245 -0.0005 7 6 6.0364 -0.5175 1.3066 8 6 5.3588 -2.4493 -0.1255 9 7 6.0780 -0.3374 -1.1353 10 6 7.4710 -0.8027 -1.1678 11 6 8.1917 -0.1719 -2.3609 12 1 8.0968 0.9128 -2.3107 13 6 7.5653 -0.6788 -3.6615 14 6 9.6721 -0.5566 -2.3241 15 6 10.4057 0.1625 -3.4268 16 1 9.8696 0.8278 -4.0876 17 6 11.7612 -0.0280 -3.5915 18 7 12.4139 -0.8376 -2.7866 19 14 12.6702 0.8628 -4.9587 20 1 12.5345 2.3294 -4.7697 21 1 14.1071 0.4895 -4.9229 22 1 12.0918 0.4771 -6.2709 23 16 2.5436 -1.4247 0.0079 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 0.8902 0.5135 26 1 -0.3633 -0.8898 0.5142 27 1 1.9024 2.0875 0.0004 28 1 5.4987 -0.9530 2.1486 29 1 7.0651 -0.8779 1.3063 30 1 6.0324 0.5689 1.3957 31 1 4.8720 -2.7393 -1.0567 32 1 6.3874 -2.8101 -0.1260 33 1 4.8210 -2.8850 0.7165 34 1 5.6097 -0.5380 -2.0063 35 1 7.9726 -0.5122 -0.2448 36 1 7.4894 -1.8882 -1.2652 37 1 6.5106 -0.4047 -3.6877 38 1 8.0785 -0.2291 -4.5114 39 1 7.6601 -1.7635 -3.7117 40 1 10.0971 -0.2743 -1.3608 41 1 9.7714 -1.6331 -2.4635 42 1 13.3676 -0.9720 -2.9026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602574125.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:37 Heat of formation + Delta-G solvation = 23.276010 kcal Electronic energy + Delta-G solvation = -19964.340405 eV Core-core repulsion = 17070.435390 eV Total energy + Delta-G solvation = -2893.905015 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.98827 -38.05235 -35.16737 -32.76442 -32.14823 -29.96616 -27.51536 -27.31735 -26.75045 -25.41489 -24.28006 -22.66022 -20.79215 -19.05426 -18.83746 -17.85863 -16.44557 -15.83854 -15.30610 -15.03393 -14.60566 -14.30180 -14.19531 -13.75461 -13.43013 -13.13026 -13.03482 -12.91916 -12.60627 -12.58163 -12.17449 -11.75576 -11.70522 -11.54306 -11.35822 -11.24565 -11.13176 -10.84998 -10.66879 -10.32171 -10.13207 -9.67431 -9.57051 -9.31028 -9.12889 -8.97379 -8.83974 -8.29812 -8.11110 -5.94870 -3.95669 0.59007 1.20023 1.64487 2.79541 3.36846 3.40940 3.43859 3.97875 4.37354 4.52257 4.70084 4.76759 4.88427 4.98759 5.08615 5.17088 5.40998 5.43977 5.48360 5.56928 5.62412 5.68676 5.76825 5.82628 5.90740 5.97247 6.10002 6.10467 6.32126 6.33749 6.49863 6.60942 6.97265 7.13857 7.20714 7.35400 7.62891 7.72973 7.77088 7.89379 8.05595 8.49798 9.10407 9.67527 11.16670 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.035932 B = 0.003166 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.057579 B = 8842.085969 C = 9115.366449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.236 4.236 3 C 0.033 3.967 4 N -0.445 5.445 5 C 0.068 3.932 6 C 0.189 3.811 7 C -0.133 4.133 8 C -0.194 4.194 9 N -0.664 5.664 10 C 0.061 3.939 11 C -0.083 4.083 12 H 0.066 0.934 13 C -0.134 4.134 14 C 0.029 3.971 15 C -0.513 4.513 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 S 0.108 5.892 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.172 0.828 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.339 0.661 35 H 0.073 0.927 36 H 0.029 0.971 37 H 0.030 0.970 38 H 0.062 0.938 39 H 0.040 0.960 40 H 0.015 0.985 41 H 0.014 0.986 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.083 -2.661 7.764 24.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.357 4.357 3 C -0.118 4.118 4 N -0.157 5.157 5 C -0.212 4.212 6 C 0.094 3.906 7 C -0.192 4.192 8 C -0.254 4.254 9 N -0.296 5.296 10 C -0.068 4.068 11 C -0.102 4.102 12 H 0.084 0.916 13 C -0.191 4.191 14 C -0.008 4.008 15 C -0.551 4.551 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 S 0.363 5.637 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.189 0.811 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.158 0.842 35 H 0.092 0.908 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.034 0.966 41 H 0.032 0.968 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.506 -2.806 8.138 24.096 hybrid contribution 0.115 0.436 -1.124 1.211 sum -22.391 -2.370 7.015 23.584 Atomic orbital electron populations 1.20193 0.87002 1.03168 1.02804 1.26039 1.01509 0.95566 1.12594 1.21794 0.87116 0.99983 1.02894 1.66186 1.16797 1.18663 1.14073 1.27075 0.99647 0.91087 1.03344 1.19400 0.85215 0.91081 0.94930 1.21857 1.00445 1.03306 0.93580 1.22711 1.04166 0.96037 1.02460 1.60672 1.03017 1.61457 1.04454 1.22299 0.86756 0.96940 1.00772 1.21220 0.97500 0.99911 0.91604 0.91555 1.21741 0.97864 1.00108 0.99407 1.19097 0.88088 0.96573 0.97058 1.21209 0.93039 1.26191 1.14652 0.92637 1.25007 0.97791 0.95452 0.96258 1.69950 1.08755 1.37025 1.38002 0.86697 0.78662 0.80236 0.82637 1.20264 1.21400 1.20344 1.83929 0.99055 1.11625 1.69085 0.90676 0.90385 0.91301 0.81128 0.92692 0.90990 0.90763 0.91999 0.89852 0.91723 0.84178 0.90837 0.95268 0.95086 0.91878 0.94041 0.96638 0.96776 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.42 36.01 0.38 -0.09 16 2 C -0.24 -2.33 6.60 -35.92 -0.24 -2.57 16 3 C 0.03 0.38 11.25 -19.18 -0.22 0.17 16 4 N -0.45 -6.36 10.54 -11.86 -0.13 -6.48 16 5 C 0.07 0.88 6.02 -13.45 -0.08 0.80 16 6 C 0.19 2.48 0.93 -132.75 -0.12 2.35 16 7 C -0.13 -1.71 8.22 37.16 0.31 -1.41 16 8 C -0.19 -2.18 7.30 37.16 0.27 -1.90 16 9 N -0.66 -10.22 6.08 -101.14 -0.61 -10.83 16 10 C 0.06 1.03 4.36 -3.83 -0.02 1.02 16 11 C -0.08 -1.72 2.54 -90.62 -0.23 -1.95 16 12 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 13 C -0.13 -2.53 8.77 37.16 0.33 -2.20 16 14 C 0.03 0.75 4.45 -27.88 -0.12 0.63 16 15 C -0.51 -14.44 8.41 -34.44 -0.29 -14.73 16 16 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 19 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 S 0.11 1.12 21.59 -107.50 -2.32 -1.20 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.17 1.58 8.06 -52.49 -0.42 1.15 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.92 6.40 -51.93 -0.33 0.59 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.67 8.03 -51.92 -0.42 0.25 16 32 H 0.08 0.97 6.40 -51.93 -0.33 0.64 16 33 H 0.06 0.62 7.81 -51.93 -0.41 0.22 16 34 H 0.34 5.16 6.96 -39.29 -0.27 4.88 16 35 H 0.07 1.29 6.30 -51.93 -0.33 0.96 16 36 H 0.03 0.48 6.30 -51.93 -0.33 0.16 16 37 H 0.03 0.50 6.68 -51.93 -0.35 0.16 16 38 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 345.63 15.07 5.21 5.21 Total: -1.00 -30.99 345.63 -9.13 -40.12 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.86 Total: 1.02 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -0.14 Total: -18.37 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.00 Total: -43.65 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.32 Total: -1.20 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.99 -9.13 -40.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602574125.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.395 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds