Wall clock time and date at job start Tue Mar 31 2020 06:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31784 * 122.74634 * 2 1 4 4 C 1.29032 * 117.12226 * 180.02562 * 3 2 1 5 5 C 1.50698 * 124.91685 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.47393 * 89.99294 * 5 4 3 7 7 N 1.46905 * 109.47039 * 180.02562 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.46869 * 304.99619 * 9 8 7 11 11 C 1.53001 * 109.47245 * 64.99745 * 9 8 7 12 12 C 1.52999 * 109.46840 * 184.99885 * 9 8 7 13 13 C 1.50700 * 109.46923 * 174.99809 * 12 9 8 14 14 H 1.07998 * 120.00252 * 0.02562 * 13 12 9 15 15 C 1.37878 * 119.99978 * 179.97438 * 13 12 9 16 16 N 1.31510 * 119.99827 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00254 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46955 * 60.00122 * 17 15 13 19 19 H 1.48492 * 109.47334 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47173 * 300.00623 * 17 15 13 21 21 S 1.70975 * 110.16701 * 0.22252 * 4 3 2 22 22 C 1.33641 * 122.74949 * 180.02562 * 2 1 3 23 23 C 1.50692 * 126.04057 * 359.97438 * 22 2 1 24 24 H 1.08994 * 109.46981 * 89.98168 * 1 2 3 25 25 H 1.08999 * 109.46927 * 209.97985 * 1 2 3 26 26 H 1.08995 * 109.47133 * 329.98106 * 1 2 3 27 27 H 1.09001 * 109.46495 * 329.99180 * 5 4 3 28 28 H 1.08998 * 109.46910 * 209.99681 * 5 4 3 29 29 H 1.09001 * 109.47393 * 60.00436 * 6 5 4 30 30 H 1.08998 * 109.47408 * 300.00082 * 6 5 4 31 31 H 1.00901 * 110.99869 * 56.04956 * 7 6 5 32 32 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 33 33 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 34 34 H 1.08993 * 109.46950 * 179.97438 * 11 9 8 35 35 H 1.08997 * 109.47303 * 300.00187 * 11 9 8 36 36 H 1.09007 * 109.46679 * 59.99874 * 11 9 8 37 37 H 1.08996 * 109.47107 * 294.99983 * 12 9 8 38 38 H 1.09000 * 109.47382 * 54.99981 * 12 9 8 39 39 H 0.96999 * 120.00150 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.47229 * 89.99658 * 23 22 2 41 41 H 1.08996 * 109.47451 * 209.99636 * 23 22 2 42 42 H 1.09001 * 109.47397 * 329.99990 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5040 0.9819 -0.0005 5 6 4.4835 2.1272 -0.0012 6 6 4.8155 2.5152 1.4410 7 7 5.7699 3.6320 1.4403 8 6 6.1130 4.0321 2.8115 9 6 7.1062 5.1953 2.7699 10 1 7.9714 4.9129 2.1702 11 6 6.4319 6.4196 2.1477 12 6 7.5590 5.5302 4.1925 13 6 8.6277 6.5916 4.1426 14 1 8.9512 6.9879 3.1914 15 6 9.1917 7.0575 5.3113 16 7 8.7974 6.5753 6.4695 17 14 10.5169 8.3725 5.2495 18 1 9.9729 9.5933 4.6021 19 1 10.9563 8.6977 6.6301 20 1 11.6753 7.8716 4.4668 21 16 3.9333 -0.6730 -0.0073 22 6 2.2300 -1.1240 -0.0005 23 6 1.6848 -2.5288 -0.0006 24 1 -0.3633 0.0003 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5141 27 1 4.0431 2.9816 -0.5151 28 1 5.3958 1.8246 -0.5153 29 1 5.2559 1.6608 1.9550 30 1 3.9032 2.8177 1.9551 31 1 5.4105 4.4144 0.9142 32 1 5.2098 4.3446 3.3356 33 1 6.5629 3.1882 3.3344 34 1 7.1393 7.2483 2.1185 35 1 6.1092 6.1810 1.1343 36 1 5.5666 6.7019 2.7475 37 1 6.7089 5.8973 4.7674 38 1 7.9588 4.6341 4.6670 39 1 9.1944 6.9027 7.2917 40 1 1.5529 -2.8673 -1.0283 41 1 2.3832 -3.1897 0.5128 42 1 0.7238 -2.5457 0.5136 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602576782.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:59 Heat of formation + Delta-G solvation = 9.484286 kcal Electronic energy + Delta-G solvation = -18937.117223 eV Core-core repulsion = 16042.614154 eV Total energy + Delta-G solvation = -2894.503069 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.18018 -37.23667 -35.01010 -33.50817 -32.13904 -30.54952 -29.58297 -26.87902 -25.88345 -25.11152 -23.78563 -22.15696 -21.68226 -19.12864 -18.90250 -18.09187 -16.44634 -15.83870 -15.45255 -15.33066 -14.62146 -14.26189 -14.15158 -13.81218 -13.55447 -13.36073 -13.32798 -12.94913 -12.76885 -12.54506 -12.29744 -12.11713 -12.07733 -11.59895 -11.36001 -11.31643 -11.17664 -10.85936 -10.71078 -10.32662 -10.19566 -9.79861 -9.69673 -9.41419 -9.14606 -8.96979 -8.76837 -8.30747 -8.18325 -5.95458 -3.96648 0.46946 1.11770 1.53719 2.54519 3.36102 3.40378 3.42897 3.78333 4.40234 4.51310 4.60747 4.73781 4.89714 4.96108 5.04053 5.12573 5.14624 5.30089 5.40178 5.42239 5.48272 5.54331 5.61183 5.76219 5.77170 5.90435 5.91855 6.07415 6.08401 6.28203 6.48143 6.57774 6.94245 7.12766 7.18858 7.33675 7.56347 7.62951 7.71986 7.88165 8.04789 8.48466 9.09522 9.66537 11.16072 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.041861 B = 0.002353 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.718681 B =11897.130244 C =11997.313424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.060 3.940 3 N -0.470 5.470 4 C 0.060 3.940 5 C -0.043 4.043 6 C 0.066 3.934 7 N -0.689 5.689 8 C 0.065 3.935 9 C -0.084 4.084 10 H 0.066 0.934 11 C -0.135 4.135 12 C 0.028 3.972 13 C -0.513 4.513 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 S 0.121 5.879 22 C -0.236 4.236 23 C -0.073 4.073 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.340 0.660 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.032 0.968 36 H 0.041 0.959 37 H 0.014 0.986 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.349 -17.138 -14.779 27.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.071 4.071 3 N -0.184 5.184 4 C -0.218 4.218 5 C -0.084 4.084 6 C -0.065 4.065 7 N -0.321 5.321 8 C -0.064 4.064 9 C -0.103 4.103 10 H 0.084 0.916 11 C -0.192 4.192 12 C -0.010 4.010 13 C -0.551 4.551 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 S 0.377 5.623 22 C -0.357 4.357 23 C -0.132 4.132 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.158 0.842 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.032 0.968 38 H 0.033 0.967 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.024 -17.538 -14.662 26.818 hybrid contribution -0.945 1.219 0.421 1.599 sum -14.969 -16.319 -14.241 26.328 Atomic orbital electron populations 1.20354 0.87280 1.03279 1.02771 1.20179 0.98125 0.86290 1.02534 1.66150 1.04566 1.31527 1.16195 1.26894 0.93985 0.98146 1.02820 1.20278 0.95428 0.93631 0.99088 1.21862 0.94673 0.95834 0.94147 1.60569 1.44409 1.10908 1.16242 1.22149 0.98107 0.98877 0.87252 1.21225 0.96355 0.92108 1.00598 0.91569 1.21748 1.00374 0.99355 0.97721 1.19110 0.96023 0.96479 0.89378 1.21200 1.20386 1.21171 0.92372 0.92593 1.25026 0.97059 0.96878 0.95631 1.69954 1.43081 1.43280 0.97386 0.86681 0.82307 0.82252 0.76897 1.20314 1.21403 1.20265 1.84036 1.06535 1.03112 1.68612 1.25693 0.95345 1.00952 1.13732 1.20221 1.01117 0.89092 1.02747 0.90751 0.90771 0.90622 0.88869 0.88632 0.90945 0.94875 0.84172 0.95710 0.91405 0.91829 0.94907 0.94020 0.96755 0.96653 0.93050 0.90681 0.91157 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.06 36.01 0.36 -0.24 16 2 C 0.06 0.65 6.74 -84.22 -0.57 0.09 16 3 N -0.47 -6.02 10.53 -8.05 -0.08 -6.11 16 4 C 0.06 0.70 6.64 -13.46 -0.09 0.61 16 5 C -0.04 -0.47 6.06 -27.89 -0.17 -0.64 16 6 C 0.07 0.85 5.67 -3.82 -0.02 0.82 16 7 N -0.69 -10.10 6.50 -113.78 -0.74 -10.84 16 8 C 0.06 1.14 5.14 -3.82 -0.02 1.12 16 9 C -0.08 -1.72 2.55 -90.62 -0.23 -1.95 16 10 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 11 C -0.13 -2.52 8.78 37.16 0.33 -2.20 16 12 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 13 C -0.51 -14.44 8.41 -34.44 -0.29 -14.73 16 14 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 15 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 17 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 S 0.12 1.20 23.18 -107.50 -2.49 -1.29 16 22 C -0.24 -2.25 6.59 -35.92 -0.24 -2.48 16 23 C -0.07 -0.44 10.10 36.00 0.36 -0.08 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.42 6.72 -51.93 -0.35 0.07 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.34 4.67 6.98 -39.29 -0.27 4.39 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 35 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.38 6.76 -51.93 -0.35 0.03 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -31.33 354.42 -10.16 -41.49 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -7.11 Total: -1.34 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -0.79 Total: -17.61 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -0.09 Total: -43.40 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.49 Total: -1.29 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.33 -10.16 -41.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602576782.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.976 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds