Wall clock time and date at job start Tue Mar 31 2020 06:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31779 * 122.74991 * 2 1 4 4 C 1.29024 * 117.12660 * 180.02562 * 3 2 1 5 5 C 1.50702 * 124.91980 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47084 * 90.00116 * 5 4 3 7 7 N 1.46897 * 109.47032 * 180.02562 * 6 5 4 8 8 C 1.46896 * 111.00246 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47357 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47104 * 55.00451 * 9 8 7 11 11 C 1.52998 * 109.47026 * 294.99646 * 9 8 7 12 12 C 1.53002 * 109.46886 * 174.99797 * 9 8 7 13 13 C 1.50706 * 109.47153 * 184.99546 * 12 9 8 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46758 * 269.72576 * 17 15 13 19 19 H 1.48499 * 109.47026 * 29.72423 * 17 15 13 20 20 H 1.48496 * 109.47474 * 149.72459 * 17 15 13 21 21 S 1.70976 * 110.16713 * 0.22979 * 4 3 2 22 22 C 1.33633 * 122.75079 * 180.02562 * 2 1 3 23 23 C 1.50709 * 126.03754 * 359.97438 * 22 2 1 24 24 H 1.09001 * 109.47454 * 89.97419 * 1 2 3 25 25 H 1.08999 * 109.47442 * 209.97615 * 1 2 3 26 26 H 1.09006 * 109.47224 * 329.97098 * 1 2 3 27 27 H 1.08999 * 109.47189 * 329.99907 * 5 4 3 28 28 H 1.09002 * 109.47077 * 209.99833 * 5 4 3 29 29 H 1.08999 * 109.47278 * 59.99846 * 6 5 4 30 30 H 1.09002 * 109.46933 * 299.99805 * 6 5 4 31 31 H 1.00901 * 111.00077 * 303.95806 * 7 6 5 32 32 H 1.09001 * 109.47205 * 59.99991 * 8 7 6 33 33 H 1.09002 * 109.47023 * 300.00245 * 8 7 6 34 34 H 1.09003 * 109.46843 * 179.97438 * 11 9 8 35 35 H 1.08990 * 109.47503 * 300.00380 * 11 9 8 36 36 H 1.09001 * 109.46970 * 60.00396 * 11 9 8 37 37 H 1.09004 * 109.47178 * 65.00336 * 12 9 8 38 38 H 1.08993 * 109.47411 * 305.00018 * 12 9 8 39 39 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 40 40 H 1.09000 * 109.46778 * 89.99744 * 23 22 2 41 41 H 1.08993 * 109.47124 * 209.99844 * 23 22 2 42 42 H 1.08998 * 109.46897 * 329.99659 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9819 -0.0005 5 6 4.4835 2.1271 -0.0012 6 6 4.8156 2.5149 1.4411 7 7 5.7700 3.6316 1.4405 8 6 6.1124 4.0324 2.8116 9 6 7.1055 5.1955 2.7702 10 1 6.6908 6.0062 2.1712 11 6 8.4200 4.7216 2.1469 12 6 7.3663 5.6944 4.1929 13 6 8.2473 6.9161 4.1432 14 1 8.5868 7.2986 3.1920 15 6 8.6198 7.5454 5.3120 16 7 8.2020 7.0827 6.4700 17 14 9.7112 9.0602 5.2504 18 1 11.1359 8.6467 5.3177 19 1 9.4681 9.7942 3.9826 20 1 9.3972 9.9437 6.4019 21 16 3.9332 -0.6731 -0.0075 22 6 2.2299 -1.1239 -0.0005 23 6 1.6846 -2.5289 -0.0006 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3634 -0.8902 0.5134 26 1 -0.3634 0.8898 0.5143 27 1 4.0431 2.9816 -0.5150 28 1 5.3958 1.8246 -0.5153 29 1 5.2560 1.6604 1.9550 30 1 3.9033 2.8175 1.9553 31 1 6.5986 3.3988 0.9139 32 1 6.5620 3.1887 3.3353 33 1 5.2088 4.3451 3.3351 34 1 9.1274 5.5504 2.1170 35 1 8.8347 3.9109 2.7459 36 1 8.2342 4.3662 1.1334 37 1 7.8624 4.9119 4.7671 38 1 6.4190 5.9486 4.6681 39 1 7.6350 6.2963 6.5020 40 1 1.5527 -2.8673 -1.0283 41 1 2.3830 -3.1897 0.5128 42 1 0.7237 -2.5457 0.5137 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602576783.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:04 Heat of formation + Delta-G solvation = 5.902741 kcal Electronic energy + Delta-G solvation = -18970.105752 eV Core-core repulsion = 16075.447376 eV Total energy + Delta-G solvation = -2894.658377 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.21535 -37.34607 -35.14001 -33.65106 -32.24099 -30.55575 -29.58941 -26.54680 -25.94486 -25.10639 -23.74168 -22.24964 -21.74924 -19.25695 -19.07016 -18.13565 -16.74431 -16.00074 -15.53265 -15.35983 -14.54429 -14.27013 -13.92972 -13.72584 -13.59360 -13.45918 -13.35404 -13.14479 -12.92735 -12.65763 -12.42024 -12.27721 -11.89413 -11.64610 -11.42710 -11.35498 -11.19934 -10.98705 -10.67626 -10.23562 -10.06904 -9.83872 -9.81558 -9.46589 -9.44055 -8.82592 -8.45377 -8.28098 -8.24994 -6.30187 -3.98190 0.43096 1.07226 1.48604 2.51918 3.46281 3.50460 3.65950 3.73803 4.36392 4.56797 4.59512 4.70444 4.85489 4.89063 5.01207 5.04832 5.10274 5.28769 5.34891 5.44850 5.46172 5.49345 5.63219 5.66574 5.67989 5.86426 5.88550 5.96887 6.03806 6.16446 6.37214 6.46966 6.80944 7.02542 7.04401 7.22845 7.44975 7.53463 7.54090 7.63988 8.29193 8.53186 8.95057 9.73342 11.10329 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.041857 B = 0.002367 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.780918 B =11826.959437 C =12000.570813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.062 3.938 3 N -0.466 5.466 4 C 0.062 3.938 5 C -0.043 4.043 6 C 0.067 3.933 7 N -0.688 5.688 8 C 0.064 3.936 9 C -0.077 4.077 10 H 0.068 0.932 11 C -0.134 4.134 12 C 0.014 3.986 13 C -0.593 4.593 14 H 0.050 0.950 15 C 0.011 3.989 16 N -0.917 5.917 17 Si 1.070 2.930 18 H -0.289 1.289 19 H -0.289 1.289 20 H -0.285 1.285 21 S 0.111 5.889 22 C -0.234 4.234 23 C -0.073 4.073 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.028 0.972 30 H 0.077 0.923 31 H 0.339 0.661 32 H 0.024 0.976 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.040 0.960 36 H 0.033 0.967 37 H 0.005 0.995 38 H 0.006 0.994 39 H 0.268 0.732 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.221 -19.871 -15.369 27.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 N -0.180 5.180 4 C -0.217 4.217 5 C -0.084 4.084 6 C -0.064 4.064 7 N -0.320 5.320 8 C -0.064 4.064 9 C -0.096 4.096 10 H 0.086 0.914 11 C -0.191 4.191 12 C -0.024 4.024 13 C -0.631 4.631 14 H 0.069 0.931 15 C -0.192 4.192 16 N -0.553 5.553 17 Si 0.899 3.101 18 H -0.216 1.216 19 H -0.215 1.215 20 H -0.211 1.211 21 S 0.367 5.633 22 C -0.355 4.355 23 C -0.132 4.132 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.123 0.877 28 H 0.102 0.898 29 H 0.046 0.954 30 H 0.095 0.905 31 H 0.157 0.843 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.023 0.977 38 H 0.024 0.976 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.220 -18.259 -14.507 25.880 hybrid contribution -1.032 -1.920 -0.640 2.272 sum -12.252 -20.180 -15.147 28.049 Atomic orbital electron populations 1.20364 0.87189 1.03343 1.02833 1.20199 0.98186 0.86237 1.02385 1.66140 1.04516 1.31447 1.15929 1.26887 0.94071 0.97854 1.02898 1.20271 0.95306 0.93847 0.98994 1.21873 0.97700 0.92597 0.94265 1.60514 1.17767 1.37653 1.16028 1.22153 0.99284 0.97556 0.87425 1.21087 0.93258 0.95396 0.99887 0.91392 1.21734 0.98522 1.01118 0.97722 1.19248 0.96241 0.96200 0.90669 1.22057 1.33229 1.12913 0.94938 0.93138 1.25832 0.98479 1.02408 0.92450 1.70749 1.33804 1.24523 1.26273 0.83527 0.75738 0.75467 0.75379 1.21574 1.21486 1.21086 1.83987 1.06947 1.03416 1.68950 1.25675 0.95099 1.00981 1.13745 1.20227 1.01134 0.89046 1.02775 0.90692 0.90759 0.90519 0.87674 0.89754 0.95387 0.90466 0.84267 0.95791 0.91451 0.91678 0.94113 0.94766 0.97694 0.97568 0.92159 0.90648 0.91189 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.06 36.00 0.36 -0.24 16 2 C 0.06 0.67 6.74 -84.23 -0.57 0.10 16 3 N -0.47 -6.02 10.53 -8.06 -0.08 -6.10 16 4 C 0.06 0.72 6.64 -13.46 -0.09 0.63 16 5 C -0.04 -0.47 6.06 -27.88 -0.17 -0.64 16 6 C 0.07 0.85 5.67 -3.82 -0.02 0.83 16 7 N -0.69 -10.08 6.50 -113.78 -0.74 -10.82 16 8 C 0.06 1.13 5.14 -3.83 -0.02 1.11 16 9 C -0.08 -1.60 2.55 -90.62 -0.23 -1.83 16 10 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 11 C -0.13 -2.50 8.77 37.16 0.33 -2.18 16 12 C 0.01 0.36 3.76 -27.88 -0.10 0.25 16 13 C -0.59 -16.93 8.41 -34.44 -0.29 -17.22 16 14 H 0.05 1.42 7.06 -52.49 -0.37 1.05 16 15 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 16 N -0.92 -28.55 13.65 55.43 0.76 -27.79 16 17 Si 1.07 25.74 29.90 -169.99 -5.08 20.65 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 S 0.11 1.08 23.18 -107.50 -2.49 -1.41 16 22 C -0.23 -2.21 6.59 -35.92 -0.24 -2.44 16 23 C -0.07 -0.44 10.10 36.01 0.36 -0.07 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.42 6.72 -51.93 -0.35 0.07 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.34 4.52 6.99 -39.29 -0.27 4.25 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.33 6.95 -51.93 -0.36 0.97 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.53 6.68 -51.93 -0.35 0.18 16 37 H 0.00 0.13 8.01 -51.93 -0.42 -0.29 16 38 H 0.01 0.17 8.00 -51.93 -0.42 -0.25 16 39 H 0.27 8.32 7.22 -40.82 -0.29 8.03 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.38 6.76 -51.93 -0.35 0.03 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -32.25 353.12 -10.14 -42.40 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -7.05 Total: -0.78 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -0.77 Total: -21.46 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: -0.07 Total: -44.71 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.08 Total: 20.65 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.49 Total: -1.41 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.25 -10.14 -42.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602576783.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.300 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds