Wall clock time and date at job start Tue Mar 31 2020 06:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33635 * 122.74484 * 2 1 4 4 S 1.76195 * 107.92435 * 180.02562 * 3 2 1 5 5 C 1.70982 * 90.28098 * 359.97438 * 4 3 2 6 6 C 1.50699 * 124.91405 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.46894 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47451 * 60.02581 * 6 5 4 9 9 C 1.52997 * 109.47343 * 300.02174 * 6 5 4 10 10 N 1.46900 * 109.47417 * 185.00227 * 9 6 5 11 11 C 1.46902 * 110.99933 * 180.02562 * 10 9 6 12 12 C 1.53006 * 109.46884 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.46790 * 55.00011 * 12 11 10 14 14 C 1.52992 * 109.46972 * 294.99896 * 12 11 10 15 15 C 1.52999 * 109.46984 * 174.99858 * 12 11 10 16 16 C 1.50701 * 109.47097 * 185.00098 * 15 12 11 17 17 H 1.07995 * 119.99879 * 359.97438 * 16 15 12 18 18 C 1.37881 * 120.00074 * 180.02562 * 16 15 12 19 19 N 1.31510 * 120.00022 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99846 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47307 * 90.00073 * 20 18 16 22 22 H 1.48502 * 109.47096 * 209.99988 * 20 18 16 23 23 H 1.48499 * 109.47417 * 329.99861 * 20 18 16 24 24 N 1.29027 * 110.16710 * 359.73559 * 5 4 3 25 25 H 1.08999 * 109.46995 * 90.02697 * 1 2 3 26 26 H 1.08994 * 109.46790 * 210.02384 * 1 2 3 27 27 H 1.08997 * 109.47305 * 330.02825 * 1 2 3 28 28 H 1.08001 * 126.04187 * 359.97438 * 3 2 1 29 29 H 1.09004 * 109.47043 * 299.99874 * 8 6 5 30 30 H 1.09001 * 109.47062 * 59.99689 * 8 6 5 31 31 H 1.08995 * 109.46890 * 179.97438 * 8 6 5 32 32 H 1.08996 * 109.47492 * 305.00535 * 9 6 5 33 33 H 1.09007 * 109.47405 * 65.00263 * 9 6 5 34 34 H 1.00892 * 111.00105 * 303.95566 * 10 9 6 35 35 H 1.08999 * 109.47067 * 299.99799 * 11 10 9 36 36 H 1.09000 * 109.47200 * 60.00141 * 11 10 9 37 37 H 1.09006 * 109.47308 * 299.99990 * 14 12 11 38 38 H 1.09005 * 109.47438 * 60.00073 * 14 12 11 39 39 H 1.09001 * 109.47336 * 180.02562 * 14 12 11 40 40 H 1.08996 * 109.47277 * 304.99920 * 15 12 11 41 41 H 1.08999 * 109.47436 * 65.00120 * 15 12 11 42 42 H 0.96999 * 120.00086 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6733 -0.0007 5 6 3.5040 -0.9818 -0.0002 6 6 4.4836 -2.1269 0.0001 7 1 3.9389 -3.0710 -0.0001 8 6 5.3629 -2.0456 1.2495 9 6 5.3635 -2.0457 -1.2489 10 7 6.2364 -3.2256 -1.3106 11 6 7.0981 -3.1814 -2.4995 12 6 7.9902 -4.4241 -2.5293 13 1 7.3693 -5.3184 -2.4754 14 6 8.9462 -4.3943 -1.3352 15 6 8.7976 -4.4413 -3.8288 16 6 9.5833 -5.7244 -3.9151 17 1 9.5141 -6.4543 -3.1222 18 6 10.3914 -5.9659 -5.0058 19 7 11.0775 -7.0854 -5.0809 20 14 10.5117 -4.7030 -6.3770 21 1 11.6161 -3.7552 -6.0815 22 1 10.7828 -5.3934 -7.6635 23 1 9.2319 -3.9564 -6.4760 24 7 2.2199 -1.1083 0.0060 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3634 0.8902 0.5134 28 1 1.8391 2.1308 -0.0004 29 1 5.9077 -1.1015 1.2497 30 1 4.7360 -2.1035 2.1393 31 1 6.0711 -2.8742 1.2499 32 1 4.7321 -2.0141 -2.1368 33 1 5.9742 -1.1438 -1.2052 34 1 6.7862 -3.3131 -0.4691 35 1 6.4789 -3.1575 -3.3963 36 1 7.7208 -2.2875 -2.4640 37 1 9.5671 -3.5000 -1.3891 38 1 8.3710 -4.3821 -0.4094 39 1 9.5821 -5.2794 -1.3566 40 1 8.1191 -4.3729 -4.6791 41 1 9.4831 -3.5939 -3.8419 42 1 11.6457 -7.2554 -5.8484 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602610537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:27 Heat of formation + Delta-G solvation = 17.427234 kcal Electronic energy + Delta-G solvation = -19342.614699 eV Core-core repulsion = 16448.456062 eV Total energy + Delta-G solvation = -2894.158637 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.18395 -37.71946 -35.61974 -33.14242 -31.93126 -30.92311 -27.92198 -27.65137 -26.49926 -25.53955 -23.84558 -21.84813 -20.90180 -19.92971 -19.01841 -17.76043 -16.86169 -16.12092 -15.86568 -15.27454 -14.60914 -14.23013 -14.19164 -14.05131 -13.58552 -13.25677 -13.19273 -12.99064 -12.83664 -12.63573 -12.31470 -12.09336 -11.82262 -11.67433 -11.60247 -11.30481 -11.17724 -11.01429 -10.71431 -10.41258 -9.87080 -9.80601 -9.72004 -9.65889 -9.44900 -9.05191 -8.93312 -8.50386 -8.27902 -6.00567 -3.97415 0.44730 1.11933 1.51721 2.51834 3.32259 3.40015 3.43754 3.64150 4.38325 4.48160 4.58875 4.75708 4.80218 4.84767 4.94744 5.18146 5.26371 5.32956 5.35150 5.40356 5.49556 5.57349 5.63609 5.66035 5.72490 5.87261 5.95345 5.97165 5.98710 6.14013 6.36538 6.45455 6.75283 6.96502 7.06170 7.18580 7.33054 7.47267 7.51985 7.56500 7.84122 8.58836 9.05245 9.62379 11.12863 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.032231 B = 0.002775 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.527479 B =10088.693599 C =10364.915767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.067 3.933 3 C -0.272 4.272 4 S 0.119 5.881 5 C 0.070 3.930 6 C -0.018 4.018 7 H 0.113 0.887 8 C -0.149 4.149 9 C 0.066 3.934 10 N -0.686 5.686 11 C 0.062 3.938 12 C -0.076 4.076 13 H 0.073 0.927 14 C -0.136 4.136 15 C -0.009 4.009 16 C -0.512 4.512 17 H 0.074 0.926 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.878 3.122 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.266 1.266 24 N -0.472 5.472 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.175 0.825 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.341 0.659 35 H 0.068 0.932 36 H 0.025 0.975 37 H 0.040 0.960 38 H 0.034 0.966 39 H 0.068 0.932 40 H 0.015 0.985 41 H 0.009 0.991 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.524 18.046 12.955 28.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.411 4.411 4 S 0.374 5.626 5 C -0.209 4.209 6 C -0.041 4.041 7 H 0.131 0.869 8 C -0.208 4.208 9 C -0.065 4.065 10 N -0.319 5.319 11 C -0.067 4.067 12 C -0.095 4.095 13 H 0.091 0.909 14 C -0.194 4.194 15 C -0.047 4.047 16 C -0.550 4.550 17 H 0.092 0.908 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.706 3.294 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.191 1.191 24 N -0.186 5.186 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.192 0.808 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.161 0.839 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.087 0.913 40 H 0.033 0.967 41 H 0.028 0.972 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.148 17.590 12.548 27.585 hybrid contribution -0.125 1.426 -0.634 1.566 sum -17.272 19.016 11.915 28.318 Atomic orbital electron populations 1.20361 0.87129 1.03293 1.03023 1.20343 0.98313 0.86561 1.01267 1.26812 0.95362 1.03909 1.15019 1.84020 1.07212 1.03347 1.68019 1.27092 0.93898 0.98003 1.01863 1.19894 0.93050 0.94818 0.96291 0.86911 1.21950 0.99650 1.02740 0.96433 1.21990 0.95305 0.92302 0.96884 1.60535 1.25578 1.39230 1.06533 1.22182 0.94075 0.98265 0.92153 1.21034 0.95442 0.96022 0.96954 0.90898 1.21759 0.99041 1.02374 0.96183 1.19604 0.95002 0.97495 0.92568 1.21131 1.24885 1.02559 1.06462 0.90791 1.25032 0.95305 0.95213 0.98073 1.69912 1.29349 1.24634 1.30548 0.86806 0.78838 0.81932 0.81854 1.20456 1.21491 1.19069 1.66160 1.04520 1.31539 1.16429 0.90583 0.90512 0.90812 0.80777 0.92427 0.91863 0.90470 0.90654 0.95107 0.83930 0.91392 0.95688 0.94064 0.94731 0.91259 0.96661 0.97250 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.31 36.01 0.37 -0.19 16 2 C 0.07 0.69 6.74 -84.22 -0.57 0.12 16 3 C -0.27 -2.41 11.13 29.12 0.32 -2.08 16 4 S 0.12 1.11 22.67 -107.50 -2.44 -1.33 16 5 C 0.07 0.79 6.03 -13.46 -0.08 0.70 16 6 C -0.02 -0.19 3.02 -91.77 -0.28 -0.47 16 7 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 8 C -0.15 -1.32 8.86 37.16 0.33 -0.99 16 9 C 0.07 0.78 5.00 -3.83 -0.02 0.76 16 10 N -0.69 -9.34 6.50 -113.78 -0.74 -10.08 16 11 C 0.06 1.00 5.14 -3.82 -0.02 0.98 16 12 C -0.08 -1.47 2.55 -90.62 -0.23 -1.70 16 13 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 14 C -0.14 -2.43 8.77 37.15 0.33 -2.11 16 15 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 16 C -0.51 -14.43 8.96 -34.44 -0.31 -14.74 16 17 H 0.07 2.23 7.30 -52.49 -0.38 1.85 16 18 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 19 N -0.91 -27.99 13.96 55.43 0.77 -27.21 16 20 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 24 N -0.47 -5.82 10.53 -8.05 -0.08 -5.91 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 28 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.06 0.47 7.93 -51.93 -0.41 0.06 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.66 6.68 -51.93 -0.35 0.31 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.03 0.34 8.10 -51.93 -0.42 -0.08 16 34 H 0.34 4.26 5.24 -39.30 -0.21 4.05 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 39 H 0.07 1.40 6.95 -51.93 -0.36 1.04 16 40 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 41 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -31.35 348.80 -9.31 -40.65 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -7.06 Total: -0.31 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -0.35 Total: -18.25 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.05 Total: -43.20 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.44 Total: -1.33 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.35 -9.31 -40.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602610537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.082 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds