Wall clock time and date at job start Tue Mar 31 2020 06:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33641 * 122.75051 * 2 1 4 4 S 1.76193 * 107.92600 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28262 * 0.02562 * 4 3 2 6 6 C 1.50697 * 124.91409 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46613 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.47239 * 300.02044 * 6 5 4 9 9 C 1.52997 * 109.47466 * 60.02332 * 6 5 4 10 10 N 1.46898 * 109.47386 * 175.00095 * 9 6 5 11 11 C 1.46901 * 111.00283 * 179.97438 * 10 9 6 12 12 C 1.52995 * 109.47024 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47185 * 55.00612 * 12 11 10 14 14 C 1.52999 * 109.47560 * 295.00033 * 12 11 10 15 15 C 1.53003 * 109.46827 * 175.00140 * 12 11 10 16 16 C 1.50699 * 109.47195 * 185.00572 * 15 12 11 17 17 H 1.08000 * 119.99820 * 359.97438 * 16 15 12 18 18 C 1.37874 * 120.00094 * 180.02562 * 16 15 12 19 19 N 1.31512 * 120.00125 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00152 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47185 * 59.99610 * 20 18 16 22 22 H 1.48496 * 109.47569 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47134 * 300.00266 * 20 18 16 24 24 N 1.29025 * 110.16827 * 0.24077 * 5 4 3 25 25 H 1.09003 * 109.46688 * 89.97153 * 1 2 3 26 26 H 1.08996 * 109.47292 * 209.97499 * 1 2 3 27 27 H 1.08994 * 109.47224 * 329.97833 * 1 2 3 28 28 H 1.08007 * 126.03569 * 0.04364 * 3 2 1 29 29 H 1.09001 * 109.47002 * 60.00070 * 8 6 5 30 30 H 1.08993 * 109.46955 * 180.02562 * 8 6 5 31 31 H 1.09000 * 109.47050 * 300.00336 * 8 6 5 32 32 H 1.09002 * 109.47196 * 294.99972 * 9 6 5 33 33 H 1.09004 * 109.46881 * 54.99487 * 9 6 5 34 34 H 1.00907 * 111.00007 * 303.95590 * 10 9 6 35 35 H 1.08993 * 109.46846 * 299.99851 * 11 10 9 36 36 H 1.09002 * 109.46761 * 59.99969 * 11 10 9 37 37 H 1.09000 * 109.47327 * 299.99925 * 14 12 11 38 38 H 1.09001 * 109.46738 * 60.00228 * 14 12 11 39 39 H 1.09003 * 109.47047 * 180.02562 * 14 12 11 40 40 H 1.09002 * 109.47052 * 305.00279 * 15 12 11 41 41 H 1.08993 * 109.47414 * 65.00208 * 15 12 11 42 42 H 0.96999 * 120.00369 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6732 0.0007 5 6 3.5040 -0.9818 0.0002 6 6 4.4835 -2.1270 -0.0001 7 1 3.9387 -3.0711 -0.0008 8 6 5.3636 -2.0451 -1.2490 9 6 5.3627 -2.0465 1.2495 10 7 6.2356 -3.2264 1.3110 11 6 7.0966 -3.1830 2.5004 12 6 7.9886 -4.4257 2.5300 13 1 8.5432 -4.4971 1.5944 14 6 7.1199 -5.6730 2.7044 15 6 8.9708 -4.3207 3.6984 16 6 9.9290 -5.4830 3.6551 17 1 9.8455 -6.2228 2.8727 18 6 10.9116 -5.6025 4.6148 19 7 11.0130 -4.7019 5.5678 20 14 12.0990 -7.0436 4.5616 21 1 12.8497 -7.0194 3.2806 22 1 13.0524 -6.9417 5.6955 23 1 11.3391 -8.3152 4.6658 24 7 2.2200 -1.1083 -0.0055 25 1 -0.3633 0.0005 -1.0277 26 1 -0.3634 -0.8902 0.5134 27 1 -0.3633 0.8897 0.5141 28 1 1.8392 2.1309 0.0007 29 1 5.9084 -1.1010 -1.2483 30 1 6.0718 -2.8736 -1.2494 31 1 4.7373 -2.1024 -2.1392 32 1 5.9734 -1.1447 1.2066 33 1 4.7307 -2.0154 2.1370 34 1 5.6948 -4.0780 1.2866 35 1 7.7193 -2.2891 2.4657 36 1 6.4769 -3.1596 3.3968 37 1 6.5653 -5.6016 3.6401 38 1 6.4202 -5.7478 1.8720 39 1 7.7555 -6.5583 2.7259 40 1 9.5283 -3.3872 3.6216 41 1 8.4201 -4.3387 4.6388 42 1 11.7045 -4.7858 6.2429 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602610538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:32 Heat of formation + Delta-G solvation = 13.050906 kcal Electronic energy + Delta-G solvation = -19278.310072 eV Core-core repulsion = 16383.961663 eV Total energy + Delta-G solvation = -2894.348409 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.13887 -37.54588 -35.49805 -33.14823 -31.86863 -30.83074 -27.88392 -27.06200 -26.34184 -25.35298 -23.87634 -22.09985 -20.99551 -19.87186 -18.95997 -17.71383 -16.45439 -15.88526 -15.64355 -15.10281 -14.70754 -14.60328 -14.23849 -13.85293 -13.46071 -13.13466 -13.09536 -12.85890 -12.66679 -12.32401 -12.17808 -11.97240 -11.74392 -11.58122 -11.47062 -11.18421 -11.03233 -10.86330 -10.71976 -10.33165 -10.20241 -9.83451 -9.70787 -9.60074 -9.15600 -8.98352 -8.86884 -8.31504 -8.19188 -5.96250 -3.97460 0.49336 1.16992 1.57126 2.55092 3.35518 3.39897 3.42352 3.69002 4.41494 4.50818 4.69661 4.79507 4.87778 4.97177 5.02561 5.26835 5.28937 5.39455 5.41112 5.53157 5.55339 5.65672 5.78301 5.79400 5.84967 5.95331 6.03667 6.06688 6.20491 6.26690 6.46730 6.56616 6.92749 7.11786 7.17749 7.31778 7.54986 7.60606 7.71011 7.87130 8.03935 8.47595 9.08729 9.65837 11.15253 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.040438 B = 0.002573 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.258073 B =10878.382468 C =10981.486541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.066 3.934 3 C -0.274 4.274 4 S 0.128 5.872 5 C 0.068 3.932 6 C -0.016 4.016 7 H 0.100 0.900 8 C -0.137 4.137 9 C 0.065 3.935 10 N -0.685 5.685 11 C 0.064 3.936 12 C -0.084 4.084 13 H 0.066 0.934 14 C -0.135 4.135 15 C 0.028 3.972 16 C -0.513 4.513 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.890 3.110 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 N -0.476 5.476 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.175 0.825 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.340 0.660 35 H 0.068 0.932 36 H 0.024 0.976 37 H 0.040 0.960 38 H 0.032 0.968 39 H 0.063 0.937 40 H 0.015 0.985 41 H 0.014 0.986 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.727 11.341 -12.584 25.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.066 4.066 3 C -0.413 4.413 4 S 0.383 5.617 5 C -0.211 4.211 6 C -0.039 4.039 7 H 0.118 0.882 8 C -0.195 4.195 9 C -0.066 4.066 10 N -0.317 5.317 11 C -0.064 4.064 12 C -0.102 4.102 13 H 0.085 0.915 14 C -0.192 4.192 15 C -0.010 4.010 16 C -0.551 4.551 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 N -0.191 5.191 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.192 0.808 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.159 0.841 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.033 0.967 41 H 0.032 0.968 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.419 11.697 -12.838 24.598 hybrid contribution -0.916 -0.808 0.866 1.497 sum -18.335 10.889 -11.972 24.455 Atomic orbital electron populations 1.20351 0.87204 1.03330 1.02871 1.20324 0.98257 0.86606 1.01419 1.26831 0.95570 1.03898 1.15024 1.84058 1.06875 1.03035 1.67709 1.27134 0.93862 0.98325 1.01745 1.19884 0.92552 0.94020 0.97409 0.88230 1.21821 0.99234 1.03667 0.94819 1.22003 0.94103 0.95808 0.94665 1.60552 1.24240 1.03878 1.43023 1.22151 0.94858 1.00499 0.88883 1.21218 0.95883 0.91600 1.01540 0.91545 1.21748 0.98847 0.99684 0.98911 1.19108 0.92874 0.97079 0.91911 1.21197 1.13780 1.09059 1.11098 0.92603 1.25021 0.97701 0.96233 0.95609 1.69952 1.34038 1.34886 1.14824 0.86689 0.80963 0.83057 0.77466 1.20264 1.21402 1.20316 1.66162 1.04554 1.31624 1.16731 0.90704 0.90568 0.90791 0.80791 0.92509 0.89476 0.92902 0.90694 0.95117 0.84150 0.91362 0.95747 0.94053 0.94907 0.91844 0.96656 0.96777 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.31 36.01 0.37 -0.20 16 2 C 0.07 0.70 6.74 -84.22 -0.57 0.13 16 3 C -0.27 -2.53 11.13 29.12 0.32 -2.21 16 4 S 0.13 1.26 22.67 -107.50 -2.44 -1.18 16 5 C 0.07 0.79 6.03 -13.46 -0.08 0.71 16 6 C -0.02 -0.18 2.96 -91.77 -0.27 -0.45 16 7 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 8 C -0.14 -1.39 8.98 37.16 0.33 -1.06 16 9 C 0.07 0.80 4.93 -3.83 -0.02 0.78 16 10 N -0.69 -9.59 5.95 -113.78 -0.68 -10.26 16 11 C 0.06 1.10 5.14 -3.83 -0.02 1.08 16 12 C -0.08 -1.68 2.54 -90.62 -0.23 -1.91 16 13 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 14 C -0.13 -2.48 8.78 37.16 0.33 -2.15 16 15 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 16 C -0.51 -14.32 8.41 -34.44 -0.29 -14.61 16 17 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 20 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 N -0.48 -5.99 10.53 -8.06 -0.08 -6.08 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 28 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 29 H 0.06 0.56 7.93 -51.93 -0.41 0.15 16 30 H 0.09 0.93 7.75 -51.93 -0.40 0.53 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 33 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.34 4.52 6.98 -39.29 -0.27 4.24 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 39 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 354.65 15.07 5.34 5.34 Total: -1.00 -30.60 354.65 -9.70 -40.30 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -7.22 Total: -0.71 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -0.35 Total: -17.82 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -0.03 Total: -42.63 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.44 Total: -1.18 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.60 -9.70 -40.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602610538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.355 kcal (2) G-P(sol) polarization free energy of solvation -30.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds