Wall clock time and date at job start Tue Mar 31 2020 06:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33643 * 122.74824 * 2 1 4 4 S 1.76199 * 107.92569 * 179.97438 * 3 2 1 5 5 C 1.70974 * 90.28083 * 0.02562 * 4 3 2 6 6 C 1.50705 * 124.91485 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.47063 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47137 * 299.97783 * 6 5 4 9 9 C 1.53004 * 109.46979 * 59.97402 * 6 5 4 10 10 N 1.46896 * 109.46981 * 175.00107 * 9 6 5 11 11 C 1.46903 * 111.00092 * 179.97438 * 10 9 6 12 12 C 1.53003 * 109.47309 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.46937 * 305.00417 * 12 11 10 14 14 C 1.52999 * 109.46833 * 65.00148 * 12 11 10 15 15 C 1.52998 * 109.46969 * 185.00166 * 12 11 10 16 16 C 1.50702 * 109.46821 * 174.99939 * 15 12 11 17 17 H 1.08003 * 120.00192 * 0.02562 * 16 15 12 18 18 C 1.37882 * 119.99852 * 179.97438 * 16 15 12 19 19 N 1.31513 * 119.99808 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99933 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47135 * 90.00150 * 20 18 16 22 22 H 1.48501 * 109.47118 * 210.00013 * 20 18 16 23 23 H 1.48504 * 109.47215 * 330.00074 * 20 18 16 24 24 N 1.29023 * 110.17232 * 0.02562 * 5 4 3 25 25 H 1.08997 * 109.47208 * 90.02421 * 1 2 3 26 26 H 1.09005 * 109.46733 * 210.02327 * 1 2 3 27 27 H 1.08999 * 109.47451 * 330.02592 * 1 2 3 28 28 H 1.08007 * 126.03527 * 0.24051 * 3 2 1 29 29 H 1.09001 * 109.47273 * 180.02562 * 8 6 5 30 30 H 1.09006 * 109.46585 * 299.99651 * 8 6 5 31 31 H 1.08994 * 109.47415 * 59.99265 * 8 6 5 32 32 H 1.09000 * 109.46739 * 295.00018 * 9 6 5 33 33 H 1.09000 * 109.47053 * 55.00102 * 9 6 5 34 34 H 1.00906 * 111.00070 * 56.04660 * 10 9 6 35 35 H 1.08993 * 109.47250 * 300.00367 * 11 10 9 36 36 H 1.09001 * 109.46675 * 59.99809 * 11 10 9 37 37 H 1.08998 * 109.47139 * 60.00393 * 14 12 11 38 38 H 1.09006 * 109.46929 * 179.97438 * 14 12 11 39 39 H 1.08998 * 109.47397 * 300.00178 * 14 12 11 40 40 H 1.09003 * 109.47036 * 294.99999 * 15 12 11 41 41 H 1.09003 * 109.47142 * 55.00225 * 15 12 11 42 42 H 0.97003 * 119.99755 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 0.0007 5 6 3.5040 -0.9817 0.0002 6 6 4.4836 -2.1270 0.0010 7 1 3.9388 -3.0710 0.0009 8 6 5.3640 -2.0459 -1.2476 9 6 5.3625 -2.0454 1.2508 10 7 6.2353 -3.2252 1.3134 11 6 7.0960 -3.1808 2.5031 12 6 7.9881 -4.4235 2.5339 13 1 7.3673 -5.3178 2.4797 14 6 8.9451 -4.3939 1.3405 15 6 8.7944 -4.4403 3.8340 16 6 9.5800 -5.7234 3.9213 17 1 9.5115 -6.4536 3.1284 18 6 10.3872 -5.9646 5.0128 19 7 10.4711 -5.0753 5.9779 20 14 11.3616 -7.5547 5.1206 21 1 12.6929 -7.3630 4.4911 22 1 11.5378 -7.9316 6.5461 23 1 10.6288 -8.6334 4.4102 24 7 2.2200 -1.1083 -0.0010 25 1 -0.3633 -0.0004 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5134 28 1 1.8390 2.1309 0.0037 29 1 6.0722 -2.8745 -1.2473 30 1 4.7378 -2.1040 -2.1380 31 1 5.9086 -1.1018 -1.2476 32 1 5.9731 -1.1435 1.2073 33 1 4.7302 -2.0136 2.1382 34 1 6.7858 -3.3129 0.4723 35 1 7.7187 -2.2869 2.4679 36 1 6.4761 -3.1567 3.3993 37 1 9.5659 -3.4997 1.3948 38 1 9.5810 -5.2790 1.3627 39 1 8.3707 -4.3819 0.4143 40 1 9.4798 -3.5929 3.8475 41 1 8.1151 -4.3718 4.6838 42 1 11.0393 -5.2448 6.7456 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602610539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:36 Heat of formation + Delta-G solvation = 13.702477 kcal Electronic energy + Delta-G solvation = -19291.368543 eV Core-core repulsion = 16397.048388 eV Total energy + Delta-G solvation = -2894.320155 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.14449 -37.62977 -35.51072 -33.13185 -31.87658 -30.81374 -27.88602 -27.11845 -26.38269 -25.48395 -23.87404 -22.12816 -20.85197 -19.88952 -18.97260 -17.71071 -16.51132 -16.06081 -15.70090 -15.22263 -14.63174 -14.25264 -14.13504 -14.04317 -13.55984 -13.21331 -13.08979 -12.95950 -12.73042 -12.45067 -12.29136 -11.88364 -11.75896 -11.59170 -11.40831 -11.23270 -11.09822 -10.84918 -10.73936 -10.32257 -10.19826 -9.82680 -9.71048 -9.61169 -9.16003 -8.97312 -8.87775 -8.31770 -8.19526 -5.96390 -3.97443 0.48611 1.15938 1.55759 2.55428 3.33985 3.40425 3.43946 3.68745 4.42605 4.51627 4.63598 4.80631 4.84943 4.88914 4.98221 5.22607 5.28413 5.38930 5.39474 5.46485 5.54342 5.61574 5.71700 5.76770 5.80763 5.92717 6.01119 6.02905 6.05883 6.25632 6.46075 6.55851 6.92484 7.10898 7.17593 7.32293 7.55720 7.61172 7.71386 7.87109 8.03928 8.47639 9.08930 9.65887 11.15169 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.038825 B = 0.002581 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.019048 B =10846.438266 C =10977.493633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.067 3.933 3 C -0.273 4.273 4 S 0.120 5.880 5 C 0.070 3.930 6 C -0.018 4.018 7 H 0.112 0.888 8 C -0.149 4.149 9 C 0.066 3.934 10 N -0.687 5.687 11 C 0.064 3.936 12 C -0.084 4.084 13 H 0.066 0.934 14 C -0.134 4.134 15 C 0.028 3.972 16 C -0.512 4.512 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 N -0.473 5.473 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.175 0.825 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.031 0.969 33 H 0.075 0.925 34 H 0.339 0.661 35 H 0.025 0.975 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.063 0.937 39 H 0.031 0.969 40 H 0.014 0.986 41 H 0.015 0.985 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.955 13.387 -14.828 25.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.411 4.411 4 S 0.375 5.625 5 C -0.208 4.208 6 C -0.040 4.040 7 H 0.130 0.870 8 C -0.207 4.207 9 C -0.065 4.065 10 N -0.320 5.320 11 C -0.064 4.064 12 C -0.103 4.103 13 H 0.085 0.915 14 C -0.192 4.192 15 C -0.010 4.010 16 C -0.551 4.551 17 H 0.075 0.925 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.718 3.282 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 N -0.187 5.187 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.192 0.808 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.159 0.841 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.621 13.060 -14.354 24.912 hybrid contribution 0.285 0.017 -0.012 0.285 sum -15.337 13.077 -14.366 24.751 Atomic orbital electron populations 1.20357 0.87157 1.03396 1.02882 1.20339 0.98295 0.86570 1.01306 1.26818 0.95398 1.03902 1.15033 1.84028 1.07158 1.03320 1.67960 1.27096 0.93894 0.98034 1.01822 1.19900 0.93046 0.94766 0.96336 0.86970 1.21948 0.99630 1.02745 0.96428 1.21990 0.95322 0.92388 0.96792 1.60572 1.25644 1.39164 1.06584 1.22158 0.94014 0.98367 0.91888 1.21226 0.95534 0.95660 0.97896 0.91531 1.21749 0.99040 1.02081 0.96303 1.19114 0.94302 0.97064 0.90521 1.21238 1.25583 1.03459 1.04781 0.92543 1.25026 0.97062 0.96644 0.95868 1.69967 1.39532 1.34826 1.09366 0.86627 0.80421 0.84025 0.77133 1.20773 1.21316 1.19873 1.66159 1.04526 1.31543 1.16472 0.90698 0.90474 0.90783 0.80785 0.90504 0.91921 0.92416 0.95113 0.90644 0.84116 0.95682 0.91369 0.94009 0.91801 0.94995 0.96751 0.96635 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.31 36.00 0.37 -0.21 16 2 C 0.07 0.71 6.74 -84.22 -0.57 0.14 16 3 C -0.27 -2.50 11.13 29.12 0.32 -2.18 16 4 S 0.12 1.17 22.67 -107.50 -2.44 -1.27 16 5 C 0.07 0.81 6.03 -13.46 -0.08 0.73 16 6 C -0.02 -0.20 3.02 -91.77 -0.28 -0.48 16 7 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 8 C -0.15 -1.37 8.86 37.16 0.33 -1.04 16 9 C 0.07 0.82 5.00 -3.82 -0.02 0.80 16 10 N -0.69 -9.83 6.50 -113.78 -0.74 -10.57 16 11 C 0.06 1.10 5.14 -3.82 -0.02 1.08 16 12 C -0.08 -1.71 2.55 -90.62 -0.23 -1.94 16 13 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 14 C -0.13 -2.45 8.77 37.16 0.33 -2.13 16 15 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 16 C -0.51 -14.33 8.41 -34.44 -0.29 -14.62 16 17 H 0.06 1.54 7.06 -52.48 -0.37 1.17 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 20 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 N -0.47 -5.99 10.53 -8.06 -0.08 -6.08 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 28 H 0.17 1.11 8.06 -52.48 -0.42 0.69 16 29 H 0.08 0.68 6.68 -51.93 -0.35 0.33 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.50 7.93 -51.93 -0.41 0.08 16 32 H 0.03 0.37 8.10 -51.93 -0.42 -0.05 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.34 4.44 5.24 -39.29 -0.21 4.23 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 39 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -30.93 352.40 -9.68 -40.61 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -7.09 Total: -0.62 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -0.36 Total: -17.79 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: -0.09 Total: -42.97 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.44 Total: -1.27 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.93 -9.68 -40.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602610539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.317 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds