Wall clock time and date at job start Tue Mar 31 2020 06:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33643 * 122.74824 * 2 1 4 4 S 1.76199 * 107.92569 * 179.97438 * 3 2 1 5 5 C 1.70974 * 90.28083 * 0.02562 * 4 3 2 6 6 C 1.50705 * 124.91485 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.47063 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47137 * 299.97783 * 6 5 4 9 9 C 1.53004 * 109.46979 * 59.97402 * 6 5 4 10 10 N 1.46896 * 109.46981 * 175.00107 * 9 6 5 11 11 C 1.46903 * 111.00092 * 179.97438 * 10 9 6 12 12 C 1.53003 * 109.47309 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.46937 * 305.00417 * 12 11 10 14 14 C 1.52999 * 109.46833 * 65.00148 * 12 11 10 15 15 C 1.52998 * 109.46969 * 185.00166 * 12 11 10 16 16 C 1.50702 * 109.46821 * 174.99939 * 15 12 11 17 17 H 1.08003 * 120.00192 * 0.02562 * 16 15 12 18 18 C 1.37882 * 119.99852 * 179.97438 * 16 15 12 19 19 N 1.31513 * 119.99808 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99933 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47135 * 90.00150 * 20 18 16 22 22 H 1.48501 * 109.47118 * 210.00013 * 20 18 16 23 23 H 1.48504 * 109.47215 * 330.00074 * 20 18 16 24 24 N 1.29023 * 110.17232 * 0.02562 * 5 4 3 25 25 H 1.08997 * 109.47208 * 90.02421 * 1 2 3 26 26 H 1.09005 * 109.46733 * 210.02327 * 1 2 3 27 27 H 1.08999 * 109.47451 * 330.02592 * 1 2 3 28 28 H 1.08007 * 126.03527 * 0.24051 * 3 2 1 29 29 H 1.09001 * 109.47273 * 180.02562 * 8 6 5 30 30 H 1.09006 * 109.46585 * 299.99651 * 8 6 5 31 31 H 1.08994 * 109.47415 * 59.99265 * 8 6 5 32 32 H 1.09000 * 109.46739 * 295.00018 * 9 6 5 33 33 H 1.09000 * 109.47053 * 55.00102 * 9 6 5 34 34 H 1.00906 * 111.00070 * 56.04660 * 10 9 6 35 35 H 1.08993 * 109.47250 * 300.00367 * 11 10 9 36 36 H 1.09001 * 109.46675 * 59.99809 * 11 10 9 37 37 H 1.08998 * 109.47139 * 60.00393 * 14 12 11 38 38 H 1.09006 * 109.46929 * 179.97438 * 14 12 11 39 39 H 1.08998 * 109.47397 * 300.00178 * 14 12 11 40 40 H 1.09003 * 109.47036 * 294.99999 * 15 12 11 41 41 H 1.09003 * 109.47142 * 55.00225 * 15 12 11 42 42 H 0.97003 * 119.99755 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 0.0007 5 6 3.5040 -0.9817 0.0002 6 6 4.4836 -2.1270 0.0010 7 1 3.9388 -3.0710 0.0009 8 6 5.3640 -2.0459 -1.2476 9 6 5.3625 -2.0454 1.2508 10 7 6.2353 -3.2252 1.3134 11 6 7.0960 -3.1808 2.5031 12 6 7.9881 -4.4235 2.5339 13 1 7.3673 -5.3178 2.4797 14 6 8.9451 -4.3939 1.3405 15 6 8.7944 -4.4403 3.8340 16 6 9.5800 -5.7234 3.9213 17 1 9.5115 -6.4536 3.1284 18 6 10.3872 -5.9646 5.0128 19 7 10.4711 -5.0753 5.9779 20 14 11.3616 -7.5547 5.1206 21 1 12.6929 -7.3630 4.4911 22 1 11.5378 -7.9316 6.5461 23 1 10.6288 -8.6334 4.4102 24 7 2.2200 -1.1083 -0.0010 25 1 -0.3633 -0.0004 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5134 28 1 1.8390 2.1309 0.0037 29 1 6.0722 -2.8745 -1.2473 30 1 4.7378 -2.1040 -2.1380 31 1 5.9086 -1.1018 -1.2476 32 1 5.9731 -1.1435 1.2073 33 1 4.7302 -2.0136 2.1382 34 1 6.7858 -3.3129 0.4723 35 1 7.7187 -2.2869 2.4679 36 1 6.4761 -3.1567 3.3993 37 1 9.5659 -3.4997 1.3948 38 1 9.5810 -5.2790 1.3627 39 1 8.3707 -4.3819 0.4143 40 1 9.4798 -3.5929 3.8475 41 1 8.1151 -4.3718 4.6838 42 1 11.0393 -5.2448 6.7456 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602610539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:36 Heat of formation + Delta-G solvation = -5.242255 kcal Electronic energy + Delta-G solvation = -19292.190048 eV Core-core repulsion = 16397.048388 eV Total energy + Delta-G solvation = -2895.141660 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.93315 -38.86011 -36.87974 -34.81433 -33.32197 -31.78874 -28.94162 -28.54053 -27.55238 -26.69629 -25.22442 -23.74145 -21.74912 -20.69350 -20.59745 -18.61548 -18.40798 -17.18759 -16.78981 -16.53481 -16.04674 -15.49690 -15.30736 -15.08406 -14.64814 -14.36283 -14.15417 -14.04252 -13.85855 -13.46472 -13.36495 -13.29376 -13.20944 -12.73982 -12.66694 -12.59893 -12.33244 -12.26606 -12.09557 -12.00015 -11.86801 -11.46790 -11.05457 -10.93450 -10.63681 -10.52155 -10.38964 -9.64404 -9.39107 -8.16329 -6.25182 -0.28502 0.40744 0.79618 1.41124 1.42234 1.53245 1.77006 2.43063 2.83689 3.17254 3.42710 3.79468 3.89958 4.02096 4.23599 4.25509 4.27404 4.33124 4.40931 4.47955 4.62327 4.70759 4.76443 4.77706 4.83411 4.88123 4.90595 4.95075 5.05223 5.10043 5.23748 5.26483 5.35265 5.40531 5.51539 5.56989 5.81240 5.90789 6.02312 6.32228 6.50031 6.78683 6.91015 7.42999 8.95815 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.038825 B = 0.002581 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.019048 B =10846.438266 C =10977.493633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.042 3.958 3 C -0.265 4.265 4 S 0.139 5.861 5 C 0.049 3.951 6 C -0.011 4.011 7 H 0.098 0.902 8 C -0.145 4.145 9 C 0.071 3.929 10 N -0.686 5.686 11 C 0.077 3.923 12 C -0.076 4.076 13 H 0.057 0.943 14 C -0.127 4.127 15 C 0.032 3.968 16 C -0.527 4.527 17 H 0.062 0.938 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.961 3.039 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.264 1.264 24 N -0.502 5.502 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.204 0.796 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.349 0.651 35 H 0.028 0.972 36 H 0.054 0.946 37 H 0.042 0.958 38 H 0.045 0.955 39 H 0.069 0.931 40 H -0.009 1.009 41 H -0.015 1.015 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.210 13.840 -16.516 26.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 C -0.404 4.404 4 S 0.394 5.606 5 C -0.230 4.230 6 C -0.033 4.033 7 H 0.116 0.884 8 C -0.204 4.204 9 C -0.059 4.059 10 N -0.320 5.320 11 C -0.053 4.053 12 C -0.095 4.095 13 H 0.075 0.925 14 C -0.185 4.185 15 C -0.006 4.006 16 C -0.565 4.565 17 H 0.080 0.920 18 C -0.201 4.201 19 N -0.577 5.577 20 Si 0.786 3.214 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.188 1.188 24 N -0.218 5.218 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.221 0.779 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.170 0.830 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.009 0.991 41 H 0.003 0.997 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.885 13.510 -16.068 26.326 hybrid contribution 0.303 -0.042 0.520 0.604 sum -15.582 13.468 -15.548 25.805 Atomic orbital electron populations 1.20437 0.85380 1.04013 1.03724 1.20816 0.99668 0.86478 1.01946 1.27214 0.94902 1.04934 1.13352 1.83894 1.07614 1.01739 1.67308 1.27120 0.93868 0.99106 1.02859 1.19764 0.92896 0.94277 0.96364 0.88399 1.21936 0.99467 1.03390 0.95569 1.21941 0.95005 0.91864 0.97135 1.60448 1.25200 1.40468 1.05851 1.21849 0.93707 0.96844 0.92855 1.21017 0.95644 0.96767 0.96032 0.92496 1.21664 0.98682 1.01263 0.96872 1.19015 0.93704 0.95459 0.92412 1.21648 1.25671 1.04299 1.04916 0.92001 1.25962 0.98304 1.00306 0.95523 1.70104 1.40540 1.37005 1.10069 0.85504 0.79020 0.79662 0.77221 1.19769 1.21062 1.18800 1.66170 1.05271 1.33145 1.17165 0.89697 0.91404 0.88618 0.77937 0.89978 0.91413 0.91589 0.94103 0.92043 0.82964 0.95378 0.92715 0.93896 0.93544 0.91248 0.99052 0.99670 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.31 71.23 0.73 -0.29 16 2 C 0.04 0.84 6.74 41.52 0.28 1.12 16 3 C -0.27 -4.31 11.13 66.78 0.74 -3.57 16 4 S 0.14 2.48 22.67 -56.49 -1.28 1.20 16 5 C 0.05 1.09 6.03 88.52 0.53 1.62 16 6 C -0.01 -0.23 3.02 -11.54 -0.03 -0.26 16 7 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 8 C -0.15 -2.41 8.86 71.98 0.64 -1.77 16 9 C 0.07 1.71 5.00 86.31 0.43 2.14 16 10 N -0.69 -18.86 6.50 -513.88 -3.34 -22.20 16 11 C 0.08 2.62 5.14 86.30 0.44 3.06 16 12 C -0.08 -3.07 2.55 -10.79 -0.03 -3.10 16 13 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 14 C -0.13 -4.49 8.77 71.98 0.63 -3.86 16 15 C 0.03 1.67 4.45 29.85 0.13 1.80 16 16 C -0.53 -29.88 8.41 25.60 0.22 -29.67 16 17 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 18 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 19 N -0.94 -57.61 13.29 21.45 0.28 -57.33 16 20 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 24 N -0.50 -12.48 10.53 -179.40 -1.89 -14.37 16 25 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.10 0.82 8.12 -2.39 -0.02 0.80 16 28 H 0.20 1.94 8.06 -2.91 -0.02 1.91 16 29 H 0.08 1.26 6.68 -2.39 -0.02 1.25 16 30 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.07 0.99 7.93 -2.39 -0.02 0.97 16 32 H 0.04 0.91 8.10 -2.39 -0.02 0.89 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.35 8.37 5.24 -89.69 -0.47 7.90 16 35 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.05 1.78 6.95 -2.38 -0.02 1.77 16 39 H 0.07 1.91 6.68 -2.39 -0.02 1.89 16 40 H -0.01 -0.51 8.14 -2.39 -0.02 -0.52 16 41 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 42 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -67.49 352.40 1.50 -65.98 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.52 Total: 12.53 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: 5.18 Total: -32.53 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -4.94 Total: -93.90 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -1.28 Total: 1.20 kcal Total: -67.49 1.50 -65.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602610539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.742 kcal (2) G-P(sol) polarization free energy of solvation -67.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds