Wall clock time and date at job start Tue Mar 31 2020 06:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33635 * 122.74484 * 2 1 4 4 S 1.76195 * 107.92435 * 180.02562 * 3 2 1 5 5 C 1.70982 * 90.28098 * 359.97438 * 4 3 2 6 6 C 1.50699 * 124.91405 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.46849 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47369 * 59.97733 * 6 5 4 9 9 C 1.53005 * 109.47060 * 299.97346 * 6 5 4 10 10 N 1.46902 * 109.46911 * 185.00497 * 9 6 5 11 11 C 1.46894 * 110.99965 * 180.02562 * 10 9 6 12 12 C 1.53005 * 109.47219 * 179.97438 * 11 10 9 13 13 H 1.08991 * 109.46876 * 304.99642 * 12 11 10 14 14 C 1.52999 * 109.46934 * 64.99785 * 12 11 10 15 15 C 1.53006 * 109.47097 * 184.99816 * 12 11 10 16 16 C 1.50696 * 109.46982 * 175.00124 * 15 12 11 17 17 H 1.08000 * 120.00038 * 359.97438 * 16 15 12 18 18 C 1.37873 * 119.99818 * 180.02562 * 16 15 12 19 19 N 1.31519 * 120.00422 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99941 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47376 * 59.99430 * 20 18 16 22 22 H 1.48501 * 109.47181 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46950 * 299.99308 * 20 18 16 24 24 N 1.29027 * 110.16710 * 359.73559 * 5 4 3 25 25 H 1.08999 * 109.46995 * 90.02697 * 1 2 3 26 26 H 1.08994 * 109.46790 * 210.02384 * 1 2 3 27 27 H 1.08997 * 109.47305 * 330.02825 * 1 2 3 28 28 H 1.08001 * 126.04187 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.46968 * 299.99723 * 8 6 5 30 30 H 1.08997 * 109.47081 * 59.99599 * 8 6 5 31 31 H 1.09002 * 109.47013 * 180.02562 * 8 6 5 32 32 H 1.09002 * 109.47064 * 305.00363 * 9 6 5 33 33 H 1.08995 * 109.47242 * 65.00865 * 9 6 5 34 34 H 1.00903 * 110.99722 * 303.95233 * 10 9 6 35 35 H 1.09007 * 109.47122 * 299.99523 * 11 10 9 36 36 H 1.08996 * 109.47554 * 59.99510 * 11 10 9 37 37 H 1.09000 * 109.46898 * 60.00227 * 14 12 11 38 38 H 1.09001 * 109.46726 * 179.97438 * 14 12 11 39 39 H 1.08997 * 109.47173 * 299.99838 * 14 12 11 40 40 H 1.09001 * 109.46716 * 295.00423 * 15 12 11 41 41 H 1.09004 * 109.47013 * 54.99966 * 15 12 11 42 42 H 0.96994 * 120.00177 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6733 -0.0007 5 6 3.5040 -0.9818 -0.0002 6 6 4.4836 -2.1269 0.0001 7 1 3.9389 -3.0710 0.0008 8 6 5.3637 -2.0449 1.2489 9 6 5.3627 -2.0463 -1.2496 10 7 6.2356 -3.2263 -1.3112 11 6 7.0964 -3.1828 -2.5006 12 6 7.9894 -4.4250 -2.5297 13 1 8.5441 -4.4956 -1.5941 14 6 7.1215 -5.6730 -2.7035 15 6 8.9715 -4.3199 -3.6982 16 6 9.9304 -5.4816 -3.6544 17 1 9.8479 -6.2207 -2.8713 18 6 10.9136 -5.6003 -4.6136 19 7 11.0145 -4.7000 -5.5670 20 14 12.1019 -7.0407 -4.5598 21 1 11.3429 -8.3127 -4.6646 22 1 13.0559 -6.9380 -5.6931 23 1 12.8519 -7.0160 -3.2784 24 7 2.2199 -1.1083 0.0060 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3634 0.8902 0.5134 28 1 1.8391 2.1308 -0.0004 29 1 5.9085 -1.1008 1.2482 30 1 4.7374 -2.1023 2.1391 31 1 6.0725 -2.8730 1.2488 32 1 4.7306 -2.0152 -2.1371 33 1 5.9735 -1.1446 -1.2067 34 1 6.7859 -3.3133 -0.4699 35 1 6.4767 -3.1595 -3.3971 36 1 7.7191 -2.2889 -2.4661 37 1 6.5668 -5.6023 -3.6391 38 1 7.7577 -6.5578 -2.7246 39 1 6.4219 -5.7478 -1.8710 40 1 8.4206 -4.3386 -4.6386 41 1 9.5284 -3.3860 -3.6219 42 1 11.7064 -4.7834 -6.2416 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602610540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:43 Heat of formation + Delta-G solvation = 13.437521 kcal Electronic energy + Delta-G solvation = -19277.759227 eV Core-core repulsion = 16383.427583 eV Total energy + Delta-G solvation = -2894.331644 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.14513 -37.57374 -35.48214 -33.13913 -31.88159 -30.82442 -27.88812 -27.05765 -26.39890 -25.34610 -23.79137 -22.17741 -20.86835 -19.90025 -19.07955 -17.70949 -16.35268 -16.02308 -15.64442 -15.22068 -14.61466 -14.32124 -14.20257 -14.02096 -13.42944 -13.31178 -13.11692 -12.86144 -12.82099 -12.46581 -12.12848 -11.85212 -11.63928 -11.52492 -11.40933 -11.17932 -11.12955 -10.82970 -10.72641 -10.27856 -10.22805 -9.82908 -9.68748 -9.60968 -9.14845 -8.97633 -8.87403 -8.31257 -8.17230 -5.96156 -3.97328 0.48578 1.15974 1.55836 2.55324 3.35524 3.39847 3.42359 3.68620 4.42330 4.51544 4.63753 4.80886 4.84924 4.88843 4.97972 5.22899 5.28866 5.38517 5.39515 5.47192 5.54636 5.60888 5.69790 5.76467 5.85979 5.93065 6.01010 6.05209 6.16556 6.42488 6.55466 6.70133 7.01424 7.18997 7.20927 7.32882 7.55528 7.60979 7.70861 7.86761 8.04021 8.47904 9.08880 9.65933 11.15362 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.040440 B = 0.002573 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.218618 B =10881.114646 C =10978.781225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.067 3.933 3 C -0.273 4.273 4 S 0.120 5.880 5 C 0.070 3.930 6 C -0.018 4.018 7 H 0.112 0.888 8 C -0.149 4.149 9 C 0.066 3.934 10 N -0.684 5.684 11 C 0.064 3.936 12 C -0.082 4.082 13 H 0.054 0.946 14 C -0.123 4.123 15 C 0.027 3.973 16 C -0.513 4.513 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.890 3.110 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 N -0.473 5.473 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.175 0.825 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.338 0.662 35 H 0.067 0.933 36 H 0.026 0.974 37 H 0.039 0.961 38 H 0.053 0.947 39 H 0.042 0.958 40 H 0.016 0.984 41 H 0.012 0.988 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.840 12.151 13.492 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.412 4.412 4 S 0.376 5.624 5 C -0.209 4.209 6 C -0.040 4.040 7 H 0.130 0.870 8 C -0.207 4.207 9 C -0.064 4.064 10 N -0.316 5.316 11 C -0.065 4.065 12 C -0.101 4.101 13 H 0.072 0.928 14 C -0.181 4.181 15 C -0.010 4.010 16 C -0.551 4.551 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 N -0.187 5.187 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.192 0.808 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.157 0.843 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.035 0.965 41 H 0.031 0.969 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.486 11.838 13.031 24.814 hybrid contribution 0.415 0.115 0.084 0.439 sum -17.071 11.953 13.115 24.623 Atomic orbital electron populations 1.20357 0.87165 1.03258 1.03005 1.20335 0.98290 0.86578 1.01320 1.26814 0.95419 1.03902 1.15039 1.84043 1.07127 1.03316 1.67929 1.27106 0.93898 0.98049 1.01808 1.19896 0.93030 0.94723 0.96352 0.87002 1.21948 0.99621 1.02793 0.96383 1.21986 0.95315 0.92404 0.96743 1.60530 1.25639 1.39071 1.06335 1.22172 0.94030 0.98324 0.91948 1.21201 0.95480 0.92604 1.00811 0.92799 1.21593 0.98511 0.98147 0.99808 1.19122 0.92846 0.96898 0.92173 1.21197 1.13646 1.09118 1.11137 0.92602 1.25024 0.97725 0.96223 0.95606 1.69955 1.34023 1.34915 1.14828 0.86687 0.80936 0.83123 0.77422 1.20254 1.21399 1.20325 1.66160 1.04531 1.31537 1.16504 0.90596 0.90547 0.90829 0.80794 0.92430 0.91960 0.90426 0.90708 0.95097 0.84321 0.91455 0.95621 0.94165 0.92766 0.93879 0.96549 0.96936 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.31 36.01 0.37 -0.21 16 2 C 0.07 0.70 6.74 -84.22 -0.57 0.13 16 3 C -0.27 -2.50 11.13 29.12 0.32 -2.18 16 4 S 0.12 1.17 22.67 -107.50 -2.44 -1.27 16 5 C 0.07 0.81 6.03 -13.46 -0.08 0.73 16 6 C -0.02 -0.19 3.02 -91.77 -0.28 -0.47 16 7 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 8 C -0.15 -1.36 8.86 37.16 0.33 -1.03 16 9 C 0.07 0.81 5.00 -3.82 -0.02 0.79 16 10 N -0.68 -9.57 5.95 -113.78 -0.68 -10.25 16 11 C 0.06 1.09 5.07 -3.82 -0.02 1.07 16 12 C -0.08 -1.66 2.48 -90.61 -0.22 -1.88 16 13 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 14 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 15 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 16 C -0.51 -14.36 8.41 -34.44 -0.29 -14.65 16 17 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 18 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 20 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 N -0.47 -5.95 10.53 -8.05 -0.08 -6.04 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.39 8.12 -51.93 -0.42 -0.04 16 28 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.06 0.50 7.93 -51.93 -0.41 0.08 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.68 6.68 -51.93 -0.35 0.33 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.03 0.37 8.10 -51.93 -0.42 -0.05 16 34 H 0.34 4.34 6.98 -39.29 -0.27 4.06 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 39 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 354.65 15.07 5.34 5.34 Total: -1.00 -30.93 354.65 -9.70 -40.63 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -7.22 Total: -1.10 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -0.35 Total: -17.71 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -0.03 Total: -42.63 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.44 Total: -1.27 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.93 -9.70 -40.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602610540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.065 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds