Wall clock time and date at job start Tue Mar 31 2020 06:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50705 * 124.90906 * 179.67999 * 5 4 3 7 7 H 1.09004 * 109.46655 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.47295 * 300.03744 * 6 5 4 9 9 C 1.52992 * 109.47227 * 60.04099 * 6 5 4 10 10 N 1.46903 * 109.47184 * 174.99481 * 9 6 5 11 11 C 1.46894 * 110.99979 * 180.02562 * 10 9 6 12 12 C 1.53007 * 109.47122 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.47136 * 305.00048 * 12 11 10 14 14 C 1.53002 * 109.46797 * 65.00228 * 12 11 10 15 15 C 1.52996 * 109.47189 * 184.99854 * 12 11 10 16 16 C 1.50699 * 109.47078 * 174.99949 * 15 12 11 17 17 H 1.08000 * 119.99781 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00126 * 180.02562 * 16 15 12 19 19 N 1.31513 * 120.00075 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00073 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47417 * 59.99772 * 20 18 16 22 22 H 1.48499 * 109.46809 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46645 * 299.99662 * 20 18 16 24 24 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 25 25 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 28 28 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.47194 * 179.97438 * 8 6 5 30 30 H 1.08997 * 109.47636 * 300.00701 * 8 6 5 31 31 H 1.09004 * 109.47034 * 60.00520 * 8 6 5 32 32 H 1.08996 * 109.47442 * 295.00145 * 9 6 5 33 33 H 1.09004 * 109.46899 * 55.00022 * 9 6 5 34 34 H 1.00896 * 110.99848 * 56.04694 * 10 9 6 35 35 H 1.09000 * 109.47301 * 300.00088 * 11 10 9 36 36 H 1.09005 * 109.47420 * 60.00467 * 11 10 9 37 37 H 1.08997 * 109.47425 * 59.99997 * 14 12 11 38 38 H 1.08995 * 109.46978 * 179.97438 * 14 12 11 39 39 H 1.09011 * 109.46882 * 299.99908 * 14 12 11 40 40 H 1.08996 * 109.47279 * 295.00036 * 15 12 11 41 41 H 1.09004 * 109.47090 * 55.00395 * 15 12 11 42 42 H 0.96995 * 120.00336 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9245 -0.0057 7 1 5.3559 -2.0146 -0.0119 8 6 6.0727 -0.4055 -1.2522 9 6 6.0736 -0.4201 1.2462 10 7 7.4209 -1.0029 1.3042 11 6 8.1437 -0.5402 2.4964 12 6 9.5395 -1.1665 2.5216 13 1 9.4522 -2.2512 2.4599 14 6 10.3510 -0.6516 1.3310 15 6 10.2462 -0.7849 3.8237 16 6 11.5703 -1.4999 3.9048 17 1 11.8772 -2.1601 3.1071 18 6 12.3900 -1.3112 4.9973 19 7 12.0161 -0.5077 5.9689 20 14 14.0316 -2.1970 5.0974 21 1 14.8776 -1.8037 3.9421 22 1 14.7170 -1.8276 6.3620 23 1 13.8048 -3.6643 5.0682 24 16 2.5436 -1.4248 -0.0077 25 1 -0.3633 -0.0055 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5091 28 1 1.9025 2.0874 -0.0004 29 1 7.1014 -0.7658 -1.2544 30 1 5.5595 -0.7648 -2.1441 31 1 6.0700 0.6845 -1.2458 32 1 6.1491 0.6666 1.2089 33 1 5.5117 -0.7151 2.1324 34 1 7.9401 -0.7976 0.4638 35 1 8.2335 0.5457 2.4682 36 1 7.5960 -0.8364 3.3911 37 1 10.4383 0.4331 1.3927 38 1 11.3454 -1.0974 1.3492 39 1 9.8474 -0.9235 0.4032 40 1 10.4130 0.2920 3.8445 41 1 9.6253 -1.0729 4.6721 42 1 12.5925 -0.3752 6.7377 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602611485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:10 Heat of formation + Delta-G solvation = 12.087554 kcal Electronic energy + Delta-G solvation = -19244.202245 eV Core-core repulsion = 16349.812062 eV Total energy + Delta-G solvation = -2894.390183 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.04636 -37.48446 -35.42833 -33.23679 -32.25600 -31.11408 -27.28196 -27.04396 -26.18875 -25.04121 -24.07735 -22.30181 -21.47414 -19.15932 -18.60610 -18.31475 -16.47105 -15.84907 -15.62818 -15.11791 -14.69689 -14.42199 -14.08577 -14.02383 -13.46824 -13.33439 -13.20879 -13.12261 -12.79498 -12.44670 -12.23820 -11.83872 -11.67045 -11.48092 -11.38387 -11.16577 -11.08283 -10.85157 -10.70067 -10.31767 -10.17530 -9.74712 -9.68074 -9.44734 -9.14302 -8.99203 -8.89672 -8.29936 -8.13116 -5.94633 -3.95828 0.47117 1.09015 1.52026 2.62409 3.36517 3.40781 3.43268 3.89446 4.41690 4.52296 4.60306 4.78687 4.83068 4.89736 4.95588 5.09734 5.31727 5.39055 5.40942 5.51344 5.60415 5.67401 5.77333 5.82031 5.88365 5.91774 5.99280 6.09202 6.17748 6.30655 6.49846 6.59181 6.96436 7.13688 7.20299 7.37498 7.55396 7.67096 7.73243 7.89542 8.05738 8.49400 9.10387 9.67306 11.16881 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.041425 B = 0.002522 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.764364 B =11099.457415 C =11312.202916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.233 4.233 3 C 0.034 3.966 4 N -0.468 5.468 5 C 0.062 3.938 6 C -0.013 4.013 7 H 0.098 0.902 8 C -0.141 4.141 9 C 0.072 3.928 10 N -0.690 5.690 11 C 0.065 3.935 12 C -0.084 4.084 13 H 0.066 0.934 14 C -0.134 4.134 15 C 0.028 3.972 16 C -0.513 4.513 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.277 1.277 24 S 0.117 5.883 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.173 0.827 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.339 0.661 35 H 0.025 0.975 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.063 0.937 39 H 0.031 0.969 40 H 0.014 0.986 41 H 0.015 0.985 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.280 0.541 -14.831 26.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.354 4.354 3 C -0.116 4.116 4 N -0.181 5.181 5 C -0.216 4.216 6 C -0.035 4.035 7 H 0.117 0.883 8 C -0.200 4.200 9 C -0.059 4.059 10 N -0.323 5.323 11 C -0.064 4.064 12 C -0.103 4.103 13 H 0.084 0.916 14 C -0.192 4.192 15 C -0.010 4.010 16 C -0.551 4.551 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 S 0.373 5.627 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.190 0.810 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.158 0.842 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.032 0.968 41 H 0.033 0.967 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.195 -0.640 -14.360 26.443 hybrid contribution 0.724 1.433 0.006 1.605 sum -21.471 0.792 -14.355 25.840 Atomic orbital electron populations 1.20210 0.86872 1.03275 1.02925 1.25981 1.01598 0.95247 1.12600 1.21712 0.87003 1.00005 1.02925 1.66212 1.17484 1.18716 1.15733 1.27046 1.00626 0.91202 1.02755 1.19892 0.85520 1.00807 0.97312 0.88343 1.21813 1.00413 1.02076 0.95674 1.21848 0.90835 0.97152 0.96036 1.60607 1.02707 1.62535 1.06475 1.22136 0.95570 0.96806 0.91855 1.21223 0.91406 0.99759 0.97890 0.91602 1.21748 1.00871 1.00221 0.96325 1.19108 0.94699 0.96655 0.90521 1.21201 1.02864 1.26541 1.04499 0.92603 1.25026 0.98223 0.95467 0.95876 1.69954 1.37511 1.37213 1.09017 0.86686 0.84126 0.80168 0.77182 1.20318 1.21409 1.20276 1.84035 0.98823 1.11440 1.68420 0.90575 0.91186 0.90320 0.81045 0.91055 0.92531 0.91689 0.94296 0.91193 0.84166 0.95716 0.91475 0.94003 0.91841 0.94992 0.96752 0.96664 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.42 36.01 0.38 -0.04 16 2 C -0.23 -2.06 6.60 -35.92 -0.24 -2.30 16 3 C 0.03 0.35 11.25 -19.18 -0.22 0.13 16 4 N -0.47 -5.77 10.53 -11.86 -0.12 -5.90 16 5 C 0.06 0.71 5.91 -13.45 -0.08 0.63 16 6 C -0.01 -0.14 3.03 -91.78 -0.28 -0.42 16 7 H 0.10 1.03 8.12 -51.93 -0.42 0.61 16 8 C -0.14 -1.42 8.94 37.16 0.33 -1.09 16 9 C 0.07 0.96 5.12 -3.83 -0.02 0.94 16 10 N -0.69 -10.21 6.50 -113.78 -0.74 -10.95 16 11 C 0.06 1.15 5.14 -3.82 -0.02 1.13 16 12 C -0.08 -1.73 2.55 -90.62 -0.23 -1.96 16 13 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 14 C -0.13 -2.51 8.78 37.16 0.33 -2.19 16 15 C 0.03 0.72 4.45 -27.89 -0.12 0.59 16 16 C -0.51 -14.45 8.41 -34.44 -0.29 -14.74 16 17 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 18 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 20 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 S 0.12 1.10 23.17 -107.50 -2.49 -1.39 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.07 0.69 6.68 -51.93 -0.35 0.34 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.34 4.66 5.23 -39.29 -0.21 4.45 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 39 H 0.03 0.49 6.68 -51.92 -0.35 0.15 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 353.30 15.07 5.32 5.32 Total: -1.00 -30.95 353.30 -9.98 -40.93 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.11 Total: -0.53 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -0.56 Total: -17.82 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -0.13 Total: -43.35 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.49 Total: -1.39 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.95 -9.98 -40.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602611485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.016 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds