Wall clock time and date at job start Tue Mar 31 2020 06:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33645 * 126.03651 * 2 1 4 4 N 1.31787 * 114.49770 * 179.97438 * 3 2 1 5 5 C 1.29025 * 117.12400 * 0.02562 * 4 3 2 6 6 C 1.50699 * 124.91192 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.47293 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47567 * 60.02182 * 6 5 4 9 9 C 1.53002 * 109.47223 * 300.02010 * 6 5 4 10 10 N 1.46897 * 109.47289 * 185.00114 * 9 6 5 11 11 C 1.46910 * 111.00178 * 180.02562 * 10 9 6 12 12 C 1.52992 * 109.47127 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47103 * 304.99844 * 12 11 10 14 14 C 1.52997 * 109.47482 * 65.00091 * 12 11 10 15 15 C 1.52999 * 109.46961 * 185.00452 * 12 11 10 16 16 C 1.50704 * 109.47137 * 175.00116 * 15 12 11 17 17 H 1.07991 * 120.00119 * 359.97438 * 16 15 12 18 18 C 1.37875 * 119.99876 * 179.97438 * 16 15 12 19 19 N 1.31519 * 120.00278 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00180 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46784 * 59.99793 * 20 18 16 22 22 H 1.48494 * 109.47471 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47106 * 300.00138 * 20 18 16 24 24 S 1.70977 * 110.17088 * 0.22438 * 5 4 3 25 25 H 1.08996 * 109.46583 * 90.02191 * 1 2 3 26 26 H 1.08994 * 109.47376 * 210.02388 * 1 2 3 27 27 H 1.08998 * 109.47194 * 330.02534 * 1 2 3 28 28 H 1.08001 * 122.74991 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.47013 * 299.99924 * 8 6 5 30 30 H 1.09004 * 109.46779 * 59.99931 * 8 6 5 31 31 H 1.09000 * 109.47039 * 179.97438 * 8 6 5 32 32 H 1.09005 * 109.47080 * 64.99901 * 9 6 5 33 33 H 1.09006 * 109.47444 * 305.00522 * 9 6 5 34 34 H 1.00899 * 111.00038 * 56.05156 * 10 9 6 35 35 H 1.08996 * 109.46545 * 59.99934 * 11 10 9 36 36 H 1.09001 * 109.46699 * 300.00610 * 11 10 9 37 37 H 1.09002 * 109.47153 * 59.99783 * 14 12 11 38 38 H 1.09001 * 109.46832 * 299.99974 * 14 12 11 39 39 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 40 40 H 1.09006 * 109.47194 * 294.99813 * 15 12 11 41 41 H 1.08997 * 109.47756 * 54.99294 * 15 12 11 42 42 H 0.96996 * 120.00275 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8171 0.0005 5 6 3.9311 -0.4257 0.0005 6 6 5.3532 -0.9245 0.0005 7 1 5.3559 -2.0145 0.0000 8 6 6.0730 -0.4132 1.2500 9 6 6.0733 -0.4122 -1.2485 10 7 7.4205 -0.9945 -1.3104 11 6 8.1436 -0.5234 -2.4993 12 6 9.5388 -1.1504 -2.5294 13 1 10.0543 -0.9349 -1.5935 14 6 9.4136 -2.6651 -2.7056 15 6 10.3358 -0.5653 -3.6970 16 6 11.7480 -1.0898 -3.6541 17 1 12.0472 -1.7718 -2.8722 18 6 12.6579 -0.6988 -4.6133 19 7 12.2935 0.1315 -5.5660 20 14 14.4086 -1.3483 -4.5599 21 1 14.3904 -2.8295 -4.6652 22 1 15.1818 -0.7814 -5.6939 23 1 15.0451 -0.9509 -3.2784 24 16 2.5436 -1.4248 -0.0066 25 1 -0.3632 -0.0004 -1.0277 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3633 0.8902 0.5134 28 1 1.9024 2.0875 0.0004 29 1 6.0703 0.6768 1.2504 30 1 5.5600 -0.7783 2.1398 31 1 7.1015 -0.7744 1.2501 32 1 6.1488 0.6744 -1.2044 33 1 5.5112 -0.7015 -2.1365 34 1 7.3802 -2.0024 -1.2872 35 1 8.2334 0.5622 -2.4634 36 1 7.5959 -0.8132 -3.3961 37 1 8.8982 -2.8806 -3.6415 38 1 8.8458 -3.0819 -1.8737 39 1 10.4077 -3.1117 -2.7275 40 1 9.8686 -0.8562 -4.6379 41 1 10.3494 0.5218 -3.6191 42 1 12.9335 0.4063 -6.2410 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602611486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:14 Heat of formation + Delta-G solvation = 11.939188 kcal Electronic energy + Delta-G solvation = -19230.487742 eV Core-core repulsion = 16336.091125 eV Total energy + Delta-G solvation = -2894.396617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.04078 -37.42438 -35.41967 -33.25258 -32.25507 -31.14268 -27.19628 -27.02157 -26.20012 -24.93658 -24.06548 -22.25038 -21.63527 -19.17335 -18.60679 -18.32391 -16.42107 -15.70800 -15.57282 -15.00425 -14.71397 -14.61102 -14.38325 -13.83906 -13.41505 -13.32378 -13.30068 -13.00830 -12.63813 -12.33747 -12.09589 -11.92741 -11.65579 -11.48613 -11.44077 -11.13477 -11.03400 -10.85203 -10.69847 -10.32268 -10.18012 -9.73937 -9.67881 -9.46165 -9.14511 -8.99532 -8.89758 -8.29951 -8.13165 -5.94689 -3.95897 0.46634 1.07741 1.50235 2.62857 3.36462 3.40789 3.43244 3.88682 4.42116 4.52420 4.59278 4.77507 4.84686 4.86738 5.08799 5.09533 5.29546 5.38411 5.40879 5.52981 5.67869 5.70389 5.83252 5.87896 5.89441 5.98229 6.06723 6.12875 6.29089 6.35542 6.49122 6.59115 6.95814 7.13285 7.20141 7.36735 7.55992 7.66075 7.73254 7.89378 8.05658 8.49274 9.10345 9.67253 11.16805 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.043834 B = 0.002508 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.614101 B =11161.636135 C =11302.155890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.232 4.232 3 C 0.036 3.964 4 N -0.466 5.466 5 C 0.064 3.936 6 C -0.011 4.011 7 H 0.086 0.914 8 C -0.129 4.129 9 C 0.073 3.927 10 N -0.687 5.687 11 C 0.066 3.934 12 C -0.084 4.084 13 H 0.066 0.934 14 C -0.134 4.134 15 C 0.028 3.972 16 C -0.513 4.513 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.277 1.277 24 S 0.108 5.892 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.173 0.827 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.025 0.975 34 H 0.336 0.664 35 H 0.068 0.932 36 H 0.023 0.977 37 H 0.040 0.960 38 H 0.032 0.968 39 H 0.062 0.938 40 H 0.014 0.986 41 H 0.015 0.985 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.643 -2.712 12.602 26.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.353 4.353 3 C -0.115 4.115 4 N -0.179 5.179 5 C -0.215 4.215 6 C -0.034 4.034 7 H 0.104 0.896 8 C -0.188 4.188 9 C -0.058 4.058 10 N -0.318 5.318 11 C -0.063 4.063 12 C -0.103 4.103 13 H 0.084 0.916 14 C -0.191 4.191 15 C -0.010 4.010 16 C -0.551 4.551 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 S 0.364 5.636 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.190 0.810 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.043 0.957 34 H 0.155 0.845 35 H 0.086 0.914 36 H 0.041 0.959 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.081 0.919 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.065 -2.815 12.844 26.550 hybrid contribution 0.100 0.127 -0.876 0.891 sum -22.965 -2.687 11.968 26.036 Atomic orbital electron populations 1.20206 0.86867 1.03297 1.02899 1.25960 1.01555 0.95108 1.12703 1.21737 0.86991 1.00026 1.02770 1.66203 1.17421 1.18645 1.15613 1.27099 1.00548 0.91211 1.02641 1.19875 0.85395 0.99698 0.98399 0.89592 1.21687 1.00930 1.02117 0.94033 1.21891 0.89046 1.00958 0.93927 1.60556 1.15148 1.13042 1.43069 1.22134 0.95146 1.00152 0.88854 1.21218 0.93053 0.94467 1.01519 0.91560 1.21745 1.01643 0.96899 0.98850 1.19110 0.94054 0.95908 0.91919 1.21199 0.95551 1.27228 1.11118 0.92606 1.25028 0.98657 0.95282 0.95635 1.69958 1.35020 1.33874 1.14843 0.86686 0.84880 0.79128 0.77462 1.20336 1.21411 1.20262 1.83998 0.99111 1.11755 1.68754 0.90609 0.91198 0.90277 0.80971 0.91771 0.93508 0.90006 0.89952 0.95701 0.84520 0.91363 0.95858 0.94082 0.94944 0.91867 0.96795 0.96644 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.42 36.00 0.38 -0.03 16 2 C -0.23 -2.05 6.60 -35.92 -0.24 -2.29 16 3 C 0.04 0.36 11.25 -19.18 -0.22 0.15 16 4 N -0.47 -5.81 10.53 -11.86 -0.12 -5.93 16 5 C 0.06 0.73 5.91 -13.46 -0.08 0.65 16 6 C -0.01 -0.12 2.96 -91.77 -0.27 -0.39 16 7 H 0.09 0.83 8.12 -51.93 -0.42 0.41 16 8 C -0.13 -1.42 9.06 37.16 0.34 -1.09 16 9 C 0.07 0.96 5.05 -3.82 -0.02 0.94 16 10 N -0.69 -9.93 5.95 -113.77 -0.68 -10.61 16 11 C 0.07 1.15 5.14 -3.82 -0.02 1.13 16 12 C -0.08 -1.71 2.54 -90.63 -0.23 -1.94 16 13 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 14 C -0.13 -2.48 8.78 37.16 0.33 -2.15 16 15 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 16 C -0.51 -14.42 8.41 -34.44 -0.29 -14.71 16 17 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 18 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 20 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 S 0.11 1.01 23.17 -107.50 -2.49 -1.48 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.94 7.75 -51.93 -0.40 0.53 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.34 4.48 6.98 -39.29 -0.27 4.20 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.03 0.49 6.68 -51.93 -0.35 0.15 16 39 H 0.06 1.27 6.95 -51.93 -0.36 0.90 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 355.57 15.07 5.36 5.36 Total: -1.00 -30.82 355.57 -10.00 -40.82 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -7.23 Total: -0.81 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -0.55 Total: -17.68 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: -0.07 Total: -43.03 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.49 Total: -1.48 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.82 -10.00 -40.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602611486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.758 kcal (2) G-P(sol) polarization free energy of solvation -30.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds