Wall clock time and date at job start Tue Mar 31 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50701 * 120.00215 * 2 1 4 4 N 1.46897 * 109.47052 * 124.99533 * 3 2 1 5 5 C 1.46900 * 111.00278 * 287.65573 * 4 3 2 6 6 C 1.50703 * 109.46782 * 160.13111 * 5 4 3 7 7 H 1.07997 * 119.99959 * 4.12304 * 6 5 4 8 8 C 1.37878 * 119.99388 * 184.11745 * 6 5 4 9 9 N 1.31512 * 120.00275 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99561 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47005 * 90.00151 * 10 8 6 12 12 H 1.48496 * 109.46977 * 210.00291 * 10 8 6 13 13 H 1.48500 * 109.47398 * 330.00194 * 10 8 6 14 14 C 1.46907 * 110.99530 * 163.70377 * 4 3 2 15 15 C 1.50700 * 109.47106 * 292.53668 * 14 4 3 16 16 C 1.36168 * 120.19406 * 103.65346 * 15 14 4 17 17 C 1.39318 * 120.87353 * 179.97438 * 16 15 14 18 18 C 1.36113 * 121.06087 * 0.02562 * 17 16 15 19 19 C 1.40563 * 119.74933 * 0.27405 * 18 17 16 20 20 N 1.33682 * 121.06948 * 180.28238 * 19 18 17 21 21 C 1.31084 * 121.31748 * 179.74338 * 20 19 18 22 22 C 1.39337 * 121.75046 * 359.70131 * 21 20 19 23 23 C 1.36570 * 119.94061 * 0.02562 * 22 21 20 24 24 C 1.40396 * 120.19051 * 283.62606 * 15 14 4 25 25 H 1.08001 * 120.00049 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99403 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.00043 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46850 * 4.99446 * 3 2 1 29 29 H 1.08994 * 109.46776 * 245.00022 * 3 2 1 30 30 H 1.08996 * 109.47406 * 280.13286 * 5 4 3 31 31 H 1.09004 * 109.46687 * 40.13386 * 5 4 3 32 32 H 0.96999 * 119.99710 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.46755 * 172.53536 * 14 4 3 34 34 H 1.08996 * 109.46901 * 52.53620 * 14 4 3 35 35 H 1.08004 * 119.56675 * 359.94785 * 16 15 14 36 36 H 1.07994 * 119.46828 * 179.97438 * 17 16 15 37 37 H 1.08001 * 120.12478 * 180.02562 * 18 17 16 38 38 H 1.08001 * 119.12507 * 179.72223 * 21 20 19 39 39 H 1.08002 * 120.02781 * 179.97438 * 22 21 20 40 40 H 1.08005 * 120.92241 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9963 1.3319 1.1346 5 6 2.2763 1.4975 2.4043 6 6 3.1536 1.0428 3.5421 7 1 4.1695 0.7311 3.3495 8 6 2.6591 1.0248 4.8291 9 7 1.4218 1.4040 5.0635 10 14 3.7467 0.4618 6.2397 11 1 4.4737 1.6290 6.8005 12 1 2.9058 -0.1529 7.2981 13 1 4.7251 -0.5382 5.7418 14 6 4.0063 2.3846 0.9609 15 6 4.9059 2.0318 -0.1955 16 6 4.7580 2.6599 -1.3946 17 6 5.5822 2.3453 -2.4729 18 6 6.5571 1.4022 -2.3599 19 6 6.7366 0.7273 -1.1400 20 7 7.6895 -0.1996 -0.9981 21 6 7.8644 -0.8284 0.1387 22 6 7.0739 -0.5599 1.2543 23 6 6.0857 0.3797 1.1793 24 6 5.9016 1.0540 -0.0426 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5399 0.9353 0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3587 2.1316 0.0895 29 1 2.6214 1.4025 -0.9314 30 1 2.0184 2.5476 2.5415 31 1 1.3655 0.8990 2.3861 32 1 1.0739 1.3909 5.9689 33 1 4.6007 2.4713 1.8704 34 1 3.5104 3.3340 0.7590 35 1 3.9915 3.4118 -1.5114 36 1 5.4447 2.8573 -3.4137 37 1 7.1877 1.1704 -3.2055 38 1 8.6421 -1.5741 0.2127 39 1 7.2421 -1.0950 2.1773 40 1 5.4639 0.6007 2.0344 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602670120.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:41 Heat of formation + Delta-G solvation = 78.524843 kcal Electronic energy + Delta-G solvation = -21760.986644 eV Core-core repulsion = 18734.033446 eV Total energy + Delta-G solvation = -3026.953197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.64674 -37.73915 -36.42379 -33.72674 -33.02026 -32.08872 -30.31046 -30.15601 -27.32651 -26.17549 -24.01415 -23.74561 -23.28437 -21.20809 -20.00863 -19.19481 -17.90279 -16.92624 -16.68667 -16.26258 -15.25958 -14.68333 -14.47929 -14.36357 -14.09828 -13.96836 -13.67766 -13.42986 -13.08989 -12.72746 -12.43224 -12.20299 -11.82724 -11.60862 -11.38545 -11.21760 -11.13772 -10.88860 -10.72608 -10.59019 -10.51134 -10.17606 -9.94240 -9.34317 -9.19431 -8.84424 -8.53961 -8.48043 -7.92491 -7.37475 -6.08415 -4.10652 0.65972 1.06390 2.27897 2.78760 3.14058 3.26408 3.33746 3.35734 4.33017 4.38400 4.48588 4.82043 4.92167 5.02405 5.11700 5.27338 5.28310 5.33642 5.36852 5.53515 5.56736 5.61706 5.66607 5.90537 5.98355 6.11688 6.13466 6.21444 6.25484 6.37369 6.39764 6.41823 6.55118 6.74773 6.88431 7.07252 7.09202 7.18161 7.18494 7.30838 7.75040 8.02891 8.10249 8.12052 8.43851 8.95311 9.53529 11.01926 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.006367 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.523715 B = 4396.469879 C = 5675.624054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C 0.076 3.924 4 N -0.525 5.525 5 C 0.192 3.808 6 C -0.507 4.507 7 H 0.062 0.938 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.893 3.107 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.272 1.272 14 C 0.092 3.908 15 C -0.030 4.030 16 C -0.133 4.133 17 C -0.095 4.095 18 C -0.109 4.109 19 C 0.125 3.875 20 N -0.490 5.490 21 C 0.131 3.869 22 C -0.193 4.193 23 C -0.028 4.028 24 C -0.087 4.087 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.029 0.971 29 H 0.070 0.930 30 H -0.010 1.010 31 H 0.040 0.960 32 H 0.262 0.738 33 H 0.095 0.905 34 H 0.035 0.965 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.153 0.847 39 H 0.134 0.866 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.000 0.101 -11.656 13.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.139 4.139 3 C -0.052 4.052 4 N -0.249 5.249 5 C 0.067 3.933 6 C -0.545 4.545 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.721 3.279 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.197 1.197 14 C -0.036 4.036 15 C -0.031 4.031 16 C -0.152 4.152 17 C -0.115 4.115 18 C -0.128 4.128 19 C 0.004 3.996 20 N -0.198 5.198 21 C -0.041 4.041 22 C -0.213 4.213 23 C -0.053 4.053 24 C -0.089 4.089 25 H 0.110 0.890 26 H 0.108 0.892 27 H 0.125 0.875 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.008 0.992 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.054 0.946 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.170 0.830 39 H 0.152 0.848 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 7.589 -0.439 -12.264 14.429 hybrid contribution -0.554 0.541 1.648 1.821 sum 7.035 0.102 -10.616 12.736 Atomic orbital electron populations 1.23680 0.95960 1.01154 1.03515 1.22814 0.95307 0.98660 0.97084 1.21234 0.94446 0.94300 0.95240 1.62160 1.14656 1.44853 1.03260 1.19811 0.94327 0.95355 0.83815 1.21108 0.98825 1.43731 0.90883 0.92011 1.24962 0.95058 0.95525 0.98840 1.69947 1.14623 1.47922 1.20981 0.86580 0.80419 0.78903 0.82047 1.20712 1.21231 1.19699 1.21055 0.93642 0.92965 0.95942 1.19930 0.94122 0.93550 0.95546 1.20797 1.00357 1.01288 0.92737 1.20794 0.94944 0.97164 0.98630 1.20658 0.99245 0.96807 0.96106 1.18874 0.92567 0.94476 0.93670 1.68005 1.18688 1.07705 1.25441 1.22871 0.96950 0.96107 0.88162 1.21893 0.98109 1.00836 1.00492 1.22041 0.94071 0.91518 0.97681 1.18691 0.97227 0.98251 0.94705 0.88962 0.89159 0.87493 0.95281 0.91169 0.99211 0.94205 0.92870 0.88728 0.94638 0.86015 0.85801 0.85388 0.83001 0.84814 0.82313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.31 14.32 29.01 0.42 -2.89 16 2 C -0.12 -2.11 8.78 -36.03 -0.32 -2.42 16 3 C 0.08 1.34 5.27 -4.98 -0.03 1.32 16 4 N -0.53 -10.54 4.31 -238.96 -1.03 -11.57 16 5 C 0.19 4.69 4.58 -4.97 -0.02 4.67 16 6 C -0.51 -13.29 8.59 -34.44 -0.30 -13.58 16 7 H 0.06 1.56 5.62 -52.49 -0.30 1.26 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -25.75 13.29 55.43 0.74 -25.01 16 10 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 14 C 0.09 1.64 4.10 -4.97 -0.02 1.62 16 15 C -0.03 -0.48 4.59 -104.55 -0.48 -0.96 16 16 C -0.13 -1.82 8.49 -39.92 -0.34 -2.16 16 17 C -0.10 -1.18 9.94 -39.94 -0.40 -1.58 16 18 C -0.11 -1.51 9.98 -39.47 -0.39 -1.90 16 19 C 0.13 2.03 6.60 -84.86 -0.56 1.47 16 20 N -0.49 -7.78 10.34 -10.97 -0.11 -7.90 16 21 C 0.13 1.82 11.15 -17.46 -0.19 1.63 16 22 C -0.19 -2.82 10.03 -39.78 -0.40 -3.22 16 23 C -0.03 -0.47 9.38 -39.23 -0.37 -0.84 16 24 C -0.09 -1.46 5.74 -106.80 -0.61 -2.07 16 25 H 0.09 1.34 8.06 -52.49 -0.42 0.91 16 26 H 0.09 1.40 7.84 -52.49 -0.41 0.99 16 27 H 0.11 1.90 8.06 -52.49 -0.42 1.47 16 28 H 0.03 0.52 7.70 -51.93 -0.40 0.12 16 29 H 0.07 1.15 6.12 -51.93 -0.32 0.83 16 30 H -0.01 -0.26 8.00 -51.93 -0.42 -0.68 16 31 H 0.04 1.07 7.14 -51.93 -0.37 0.70 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.09 1.82 6.43 -51.93 -0.33 1.49 16 34 H 0.04 0.61 7.91 -51.93 -0.41 0.20 16 35 H 0.12 1.45 7.98 -52.48 -0.42 1.03 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 39 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 40 H 0.16 2.96 4.67 -52.48 -0.25 2.72 16 LS Contribution 331.86 15.07 5.00 5.00 Total: -1.00 -29.42 331.86 -9.83 -39.25 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.29 Total: 3.95 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -4.11 Total: -19.45 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: -0.41 Total: -44.48 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.42 -9.83 -39.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602670120.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.773 kcal (2) G-P(sol) polarization free energy of solvation -29.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds