Wall clock time and date at job start Tue Mar 31 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.46969 * 2 1 4 4 C 1.46901 * 110.99623 * 288.00124 * 3 2 1 5 5 C 1.50705 * 109.46963 * 160.36582 * 4 3 2 6 6 H 1.07991 * 120.00085 * 4.90016 * 5 4 3 7 7 C 1.37882 * 119.99803 * 184.89902 * 5 4 3 8 8 N 1.31509 * 119.99760 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 120.00019 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47378 * 90.00105 * 9 7 5 11 11 H 1.48510 * 109.47149 * 209.99739 * 9 7 5 12 12 H 1.48501 * 109.47453 * 329.99678 * 9 7 5 13 13 C 1.46906 * 111.00158 * 164.05325 * 3 2 1 14 14 C 1.53002 * 109.46519 * 293.94755 * 13 3 2 15 15 N 1.46498 * 109.46668 * 179.97438 * 14 13 3 16 16 C 1.35052 * 126.39411 * 90.00316 * 15 14 13 17 17 C 1.50702 * 125.64816 * 0.02562 * 16 15 14 18 18 N 1.30495 * 108.69780 * 179.97438 * 16 15 14 19 19 C 1.34133 * 109.26211 * 0.02562 * 18 16 15 20 20 C 1.34671 * 108.01203 * 359.72846 * 19 18 16 21 21 N 1.48034 * 126.58750 * 180.26136 * 20 19 18 22 22 O 1.21799 * 120.00026 * 180.18826 * 21 20 19 23 23 O 1.21804 * 119.99873 * 0.19465 * 21 20 19 24 24 H 1.09006 * 109.47064 * 179.46704 * 1 2 3 25 25 H 1.08999 * 109.47899 * 299.46926 * 1 2 3 26 26 H 1.09004 * 109.46939 * 59.47350 * 1 2 3 27 27 H 1.08999 * 109.47411 * 239.99385 * 2 1 3 28 28 H 1.09009 * 109.46756 * 119.99126 * 2 1 3 29 29 H 1.08998 * 109.47636 * 280.36375 * 4 3 2 30 30 H 1.08997 * 109.47137 * 40.36775 * 4 3 2 31 31 H 0.97000 * 120.00621 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.46912 * 173.95333 * 13 3 2 33 33 H 1.08999 * 109.46964 * 53.94593 * 13 3 2 34 34 H 1.08999 * 109.47056 * 60.00666 * 14 13 3 35 35 H 1.08995 * 109.47674 * 300.00004 * 14 13 3 36 36 H 1.08996 * 109.47087 * 90.00097 * 17 16 15 37 37 H 1.09004 * 109.46763 * 210.00000 * 17 16 15 38 38 H 1.08992 * 109.46891 * 329.99607 * 17 16 15 39 39 H 1.07994 * 125.99186 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7954 2.0225 -1.3043 5 6 1.8468 3.5204 -1.1468 6 1 2.1059 3.9544 -0.1924 7 6 1.5631 4.3368 -2.2211 8 7 1.6084 5.6439 -2.0837 9 14 1.1143 3.5861 -3.8716 10 1 -0.3566 3.3958 -3.9454 11 1 1.5514 4.4931 -4.9633 12 1 1.7913 2.2726 -4.0186 13 6 3.4384 1.4418 0.3768 14 6 3.5973 0.9997 1.8329 15 7 5.0122 1.0558 2.2085 16 6 5.6587 2.1155 2.7404 17 6 5.0417 3.4546 3.0523 18 7 6.9058 1.7875 2.9405 19 6 7.0984 0.5197 2.5471 20 6 5.9246 0.0422 2.0912 21 7 5.6707 -1.3167 1.5617 22 8 4.5564 -1.6216 1.1760 23 8 6.5762 -2.1298 1.5118 24 1 -0.3633 -1.0277 -0.0096 25 1 -0.3635 0.5055 0.8946 26 1 -0.3633 0.5220 -0.8853 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8902 29 1 2.5696 1.7039 -2.0024 30 1 0.8178 1.7309 -1.6881 31 1 1.4085 6.2183 -2.8394 32 1 3.8033 2.4629 0.2653 33 1 4.0128 0.7780 -0.2693 34 1 3.2325 -0.0214 1.9444 35 1 3.0229 1.6634 2.4790 36 1 4.6558 3.4483 4.0716 37 1 5.7972 4.2343 2.9547 38 1 4.2261 3.6498 2.3562 39 1 8.0304 -0.0241 2.5921 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602779193.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:07 Heat of formation + Delta-G solvation = 49.058133 kcal Electronic energy + Delta-G solvation = -22870.158610 eV Core-core repulsion = 19431.078377 eV Total energy + Delta-G solvation = -3439.080233 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.20523 -42.87569 -39.20012 -37.86538 -35.82805 -34.69657 -33.48727 -32.02303 -31.00498 -29.77605 -28.07853 -26.52183 -24.56706 -24.21264 -23.07469 -21.77035 -21.40561 -20.00927 -19.68660 -19.06381 -18.92321 -17.72687 -17.18438 -16.72376 -16.31540 -16.11590 -15.34724 -15.17251 -14.93085 -14.69853 -14.48305 -14.14009 -13.78330 -13.48435 -13.33841 -13.13173 -12.98967 -12.85756 -12.69706 -12.59525 -12.48165 -12.37029 -12.15234 -11.95944 -11.76863 -11.63672 -11.48069 -11.19650 -10.78577 -10.26078 -9.24078 -8.30602 -6.32298 -1.15000 -0.18964 0.55586 1.22675 1.30978 1.33463 1.41753 1.43946 2.30835 2.93746 3.00974 3.07881 3.33576 3.34135 3.67303 3.82161 4.06073 4.07676 4.20449 4.37594 4.46664 4.51229 4.57986 4.66543 4.68884 4.72596 4.82271 4.89060 4.95507 5.02466 5.14207 5.14930 5.33715 5.50848 5.54924 5.90049 6.19042 6.20070 6.43097 6.52919 6.72550 7.30759 8.85088 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.016959 B = 0.005269 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.634735 B = 5312.892234 C = 6133.535968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.041 3.959 3 N -0.525 5.525 4 C 0.171 3.829 5 C -0.510 4.510 6 H 0.050 0.950 7 C 0.016 3.984 8 N -0.941 5.941 9 Si 0.933 3.067 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.261 1.261 13 C 0.065 3.935 14 C 0.101 3.899 15 N -0.434 5.434 16 C 0.294 3.706 17 C -0.084 4.084 18 N -0.499 5.499 19 C 0.118 3.882 20 C -0.030 4.030 21 N 0.072 4.928 22 O -0.200 6.200 23 O -0.138 6.138 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.040 0.960 27 H 0.022 0.978 28 H 0.087 0.913 29 H -0.023 1.023 30 H 0.037 0.963 31 H 0.266 0.734 32 H 0.069 0.931 33 H 0.011 0.989 34 H 0.113 0.887 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.817 -10.439 10.634 15.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 N -0.250 5.250 4 C 0.044 3.956 5 C -0.548 4.548 6 H 0.068 0.932 7 C -0.182 4.182 8 N -0.581 5.581 9 Si 0.757 3.243 10 H -0.187 1.187 11 H -0.209 1.209 12 H -0.185 1.185 13 C -0.064 4.064 14 C -0.020 4.020 15 N -0.118 5.118 16 C 0.032 3.968 17 C -0.142 4.142 18 N -0.219 5.219 19 C -0.040 4.040 20 C -0.226 4.226 21 N 0.586 4.414 22 O -0.404 6.404 23 O -0.356 6.356 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.040 0.960 28 H 0.106 0.894 29 H -0.005 1.005 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.030 0.970 34 H 0.131 0.869 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.133 0.867 38 H 0.104 0.896 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.932 -8.926 11.370 15.625 hybrid contribution -0.401 -1.300 -2.251 2.631 sum 5.531 -10.226 9.119 14.776 Atomic orbital electron populations 1.21747 0.93834 1.02104 1.02125 1.22290 0.97240 0.88267 1.00812 1.61895 1.14982 1.16763 1.31320 1.19990 0.95464 0.93888 0.86236 1.21187 1.46047 0.90132 0.97442 0.93224 1.25672 0.95230 0.95031 1.02316 1.70001 1.51073 1.04277 1.32787 0.85930 0.79669 0.78888 0.79786 1.18693 1.20873 1.18514 1.22024 0.90268 1.00582 0.93570 1.22377 0.75686 1.06546 0.97400 1.45350 1.11070 1.09452 1.45954 1.24491 0.87935 0.91497 0.92922 1.20741 1.02067 0.86281 1.05078 1.70823 1.14761 1.12221 1.24144 1.23089 0.96438 0.91152 0.93287 1.21836 0.94431 0.84073 1.22307 1.42377 1.00403 1.00827 0.97814 1.94561 1.09998 1.83967 1.51844 1.94540 1.38129 1.43716 1.59195 0.90231 0.91785 0.94103 0.96012 0.89433 1.00544 0.94459 0.92452 0.91274 0.97044 0.86885 0.85001 0.85917 0.86712 0.89586 0.75604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.99 71.98 0.72 -3.21 16 2 C 0.04 1.29 5.55 86.30 0.48 1.77 16 3 N -0.52 -19.78 4.38 -900.77 -3.95 -23.73 16 4 C 0.17 7.84 3.65 85.56 0.31 8.15 16 5 C -0.51 -27.67 9.17 25.60 0.23 -27.44 16 6 H 0.05 2.92 7.89 -2.92 -0.02 2.90 16 7 C 0.02 0.87 5.47 84.66 0.46 1.34 16 8 N -0.94 -56.23 13.96 21.45 0.30 -55.93 16 9 Si 0.93 42.95 27.37 68.60 1.88 44.83 16 10 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.26 -11.56 6.69 99.48 0.67 -10.90 16 13 C 0.06 2.25 5.11 86.30 0.44 2.69 16 14 C 0.10 2.67 5.21 86.38 0.45 3.12 16 15 N -0.43 -11.30 2.75 -502.98 -1.38 -12.69 16 16 C 0.29 6.95 7.90 138.13 1.09 8.04 16 17 C -0.08 -1.49 9.98 71.24 0.71 -0.78 16 18 N -0.50 -12.25 11.25 -188.12 -2.12 -14.37 16 19 C 0.12 2.71 11.58 83.52 0.97 3.67 16 20 C -0.03 -0.81 7.96 127.31 1.01 0.20 16 21 N 0.07 2.11 4.46 -49.19 -0.22 1.89 16 22 O -0.20 -6.28 16.96 18.89 0.32 -5.96 16 23 O -0.14 -3.90 19.04 18.88 0.36 -3.54 16 24 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 25 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 26 H 0.04 1.28 6.52 -2.38 -0.02 1.26 16 27 H 0.02 0.71 8.05 -2.39 -0.02 0.69 16 28 H 0.09 2.38 5.94 -2.38 -0.01 2.36 16 29 H -0.02 -1.11 7.40 -2.39 -0.02 -1.13 16 30 H 0.04 1.68 5.40 -2.39 -0.01 1.67 16 31 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 32 H 0.07 2.71 7.32 -2.39 -0.02 2.69 16 33 H 0.01 0.43 8.12 -2.39 -0.02 0.41 16 34 H 0.11 2.95 4.56 -2.39 -0.01 2.94 16 35 H 0.13 3.01 7.66 -2.39 -0.02 2.99 16 36 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.09 1.78 7.70 -2.39 -0.02 1.76 16 39 H 0.23 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -65.82 328.13 3.09 -62.73 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.02 Total: 9.19 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 6.88 Total: -2.43 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -7.37 Total: -104.82 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.68 Total: -9.50 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.88 Total: 44.83 kcal Total: -65.82 3.09 -62.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602779193.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.789 kcal (2) G-P(sol) polarization free energy of solvation -65.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds