Wall clock time and date at job start Tue Mar 31 2020 05:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47204 * 2 1 4 4 H 1.08996 * 109.47584 * 183.89905 * 3 2 1 5 5 C 1.50699 * 109.47292 * 303.90212 * 3 2 1 6 6 H 1.08005 * 120.00253 * 115.35197 * 5 3 2 7 7 C 1.37881 * 119.99737 * 295.36099 * 5 3 2 8 8 N 1.31508 * 119.99862 * 354.18806 * 7 5 3 9 9 Si 1.86808 * 119.99918 * 174.19282 * 7 5 3 10 10 H 1.48505 * 109.46657 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47167 * 299.99498 * 9 7 5 12 12 H 1.48498 * 109.47105 * 59.99991 * 9 7 5 13 13 N 1.46907 * 109.46932 * 63.89672 * 3 2 1 14 14 C 1.46899 * 110.99635 * 80.80685 * 13 3 2 15 15 C 1.52998 * 109.47076 * 184.83213 * 14 13 3 16 16 N 1.46495 * 109.47375 * 180.02562 * 15 14 13 17 17 C 1.35042 * 126.40025 * 89.99900 * 16 15 14 18 18 C 1.50705 * 125.64436 * 0.02562 * 17 16 15 19 19 N 1.30499 * 108.70518 * 180.02562 * 17 16 15 20 20 C 1.34122 * 109.25362 * 359.97438 * 19 17 16 21 21 C 1.34673 * 108.02142 * 359.73564 * 20 19 17 22 22 N 1.48036 * 126.59238 * 180.26035 * 21 20 19 23 23 O 1.21801 * 119.99921 * 180.18560 * 22 21 20 24 24 O 1.21799 * 120.00198 * 0.19302 * 22 21 20 25 25 H 1.09004 * 109.47067 * 184.87057 * 1 2 3 26 26 H 1.09001 * 109.46827 * 304.86641 * 1 2 3 27 27 H 1.08997 * 109.47332 * 64.86946 * 1 2 3 28 28 H 1.09003 * 109.46813 * 240.00146 * 2 1 3 29 29 H 1.08996 * 109.47207 * 120.00071 * 2 1 3 30 30 H 0.97002 * 120.00483 * 354.16863 * 8 7 5 31 31 H 1.00896 * 110.99874 * 316.85662 * 13 3 2 32 32 H 1.08999 * 109.47415 * 304.83556 * 14 13 3 33 33 H 1.09001 * 109.47149 * 64.83676 * 14 13 3 34 34 H 1.08999 * 109.47279 * 300.00426 * 15 14 13 35 35 H 1.09002 * 109.47259 * 60.00077 * 15 14 13 36 36 H 1.09003 * 109.46951 * 90.00430 * 18 17 16 37 37 H 1.08998 * 109.47011 * 209.99394 * 18 17 16 38 38 H 1.08995 * 109.47507 * 329.99443 * 18 17 16 39 39 H 1.08001 * 125.99077 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1278 1.4433 -0.0699 5 6 1.4604 2.1803 -1.1792 6 1 0.7873 3.0097 -1.0196 7 6 1.7892 1.7963 -2.4620 8 7 2.6949 0.8630 -2.6573 9 14 0.9482 2.6019 -3.9227 10 1 1.4753 2.0170 -5.1818 11 1 -0.5159 2.3672 -3.8422 12 1 1.2172 4.0622 -3.9052 13 7 1.6287 2.1073 1.2438 14 6 2.5284 1.7561 2.3507 15 6 2.0011 2.3678 3.6501 16 7 2.8986 2.0182 4.7539 17 6 3.9705 2.7262 5.1702 18 6 4.4519 4.0235 4.5731 19 7 4.5205 2.1011 6.1750 20 6 3.8261 0.9832 6.4340 21 6 2.8036 0.9160 5.5601 22 7 1.7770 -0.1477 5.4831 23 8 0.9023 -0.0899 4.6374 24 8 1.8068 -1.0807 6.2655 25 1 -0.3633 -1.0240 0.0873 26 1 -0.3633 0.5875 0.8432 27 1 -0.3634 0.4364 -0.9303 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.1921 0.5048 -1.9054 31 1 0.6711 1.8864 1.4722 32 1 2.5741 0.6718 2.4518 33 1 3.5260 2.1442 2.1451 34 1 1.9554 3.4521 3.5490 35 1 1.0034 1.9798 3.8558 36 1 3.9698 4.8585 5.0815 37 1 5.5325 4.1000 4.6935 38 1 4.2017 4.0504 3.5126 39 1 4.0454 0.2654 7.2106 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602840348.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:12 Heat of formation + Delta-G solvation = 36.829326 kcal Electronic energy + Delta-G solvation = -22719.901627 eV Core-core repulsion = 19280.291113 eV Total energy + Delta-G solvation = -3439.610514 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.24212 -42.90504 -39.01727 -37.92491 -36.38565 -34.38321 -33.51838 -32.59398 -30.09296 -29.46488 -27.28954 -26.56074 -25.53751 -24.14318 -23.11544 -21.76134 -21.52117 -20.10215 -19.72210 -19.00426 -18.75081 -17.73320 -17.20467 -16.70608 -16.15447 -15.78018 -15.49503 -15.22067 -14.78638 -14.74049 -14.53035 -13.89727 -13.67892 -13.45861 -13.32356 -13.25152 -13.07356 -12.88623 -12.61065 -12.52911 -12.42259 -12.14747 -11.96280 -11.92402 -11.77722 -11.74821 -11.35749 -10.67372 -10.43222 -10.30311 -9.29420 -8.52309 -6.23440 -1.20734 -0.21599 0.50923 1.18248 1.39768 1.57946 1.64135 1.82814 2.60459 2.95665 3.13821 3.24243 3.29816 3.42882 3.72041 3.77834 4.04305 4.07193 4.26257 4.28925 4.39525 4.43943 4.49570 4.57276 4.64310 4.71413 4.86821 4.91091 5.02218 5.10283 5.14710 5.32233 5.45733 5.48868 5.84806 6.13216 6.14905 6.37062 6.45651 6.55537 6.69757 7.52628 8.83392 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022623 B = 0.004374 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.407530 B = 6399.256090 C = 7213.986478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.145 4.145 3 C 0.212 3.788 4 H -0.006 1.006 5 C -0.574 4.574 6 H 0.053 0.947 7 C -0.027 4.027 8 N -0.940 5.940 9 Si 1.108 2.892 10 H -0.292 1.292 11 H -0.272 1.272 12 H -0.272 1.272 13 N -0.665 5.665 14 C 0.059 3.941 15 C 0.100 3.900 16 N -0.434 5.434 17 C 0.294 3.706 18 C -0.083 4.083 19 N -0.499 5.499 20 C 0.119 3.881 21 C -0.031 4.031 22 N 0.071 4.929 23 O -0.207 6.207 24 O -0.137 6.137 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.040 0.960 29 H 0.025 0.975 30 H 0.255 0.745 31 H 0.339 0.661 32 H 0.005 0.995 33 H 0.068 0.932 34 H 0.141 0.859 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.046 5.555 17.053 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.185 4.185 3 C 0.103 3.897 4 H 0.012 0.988 5 C -0.612 4.612 6 H 0.072 0.928 7 C -0.225 4.225 8 N -0.579 5.579 9 Si 0.931 3.069 10 H -0.218 1.218 11 H -0.197 1.197 12 H -0.198 1.198 13 N -0.297 5.297 14 C -0.072 4.072 15 C -0.021 4.021 16 N -0.119 5.119 17 C 0.032 3.968 18 C -0.141 4.141 19 N -0.219 5.219 20 C -0.039 4.039 21 C -0.228 4.228 22 N 0.584 4.416 23 O -0.409 6.409 24 O -0.355 6.355 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.159 0.841 32 H 0.023 0.977 33 H 0.087 0.913 34 H 0.159 0.841 35 H 0.123 0.877 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.112 0.888 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.200 6.915 15.498 17.113 hybrid contribution -0.949 -2.108 1.203 2.606 sum 1.251 4.808 16.700 17.423 Atomic orbital electron populations 1.21445 0.94687 0.99966 1.01579 1.22082 0.97917 1.00160 0.98323 1.19073 0.93353 0.89226 0.88064 0.98834 1.22028 1.29927 1.17484 0.91774 0.92835 1.26985 0.96541 0.95726 1.03227 1.70915 1.23825 1.28262 1.34851 0.83031 0.75653 0.75519 0.72653 1.21756 1.19704 1.19753 1.60730 1.05813 1.61466 1.01644 1.22052 0.98093 0.96508 0.90551 1.22298 0.92832 1.04625 0.82340 1.45333 1.24665 1.16401 1.25456 1.24655 0.83298 0.96936 0.91926 1.20799 1.04765 0.87085 1.01477 1.70835 1.28262 1.06806 1.15977 1.23083 0.87495 0.96192 0.97083 1.21851 1.01143 0.92843 1.06919 1.42462 0.99874 1.00161 0.99146 1.94595 1.30652 1.84007 1.31691 1.94535 1.80144 1.23587 1.37280 0.93470 0.92620 0.93229 0.94175 0.95642 0.93463 0.84075 0.97705 0.91316 0.84066 0.87687 0.85986 0.86444 0.88827 0.75765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.87 9.38 71.98 0.68 -4.19 16 2 C -0.14 -6.66 5.46 30.60 0.17 -6.50 16 3 C 0.21 10.07 1.95 44.17 0.09 10.15 16 4 H -0.01 -0.33 7.31 -2.39 -0.02 -0.35 16 5 C -0.57 -30.02 7.42 25.60 0.19 -29.83 16 6 H 0.05 2.79 7.82 -2.91 -0.02 2.77 16 7 C -0.03 -1.46 5.27 84.66 0.45 -1.01 16 8 N -0.94 -55.36 12.88 21.45 0.28 -55.08 16 9 Si 1.11 48.46 29.91 68.60 2.05 50.51 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 12 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 13 N -0.66 -25.22 6.25 -495.45 -3.10 -28.32 16 14 C 0.06 1.87 5.83 86.30 0.50 2.37 16 15 C 0.10 2.39 5.46 86.38 0.47 2.86 16 16 N -0.43 -10.18 2.75 -502.98 -1.38 -11.57 16 17 C 0.29 5.83 7.90 138.13 1.09 6.92 16 18 C -0.08 -0.98 9.97 71.24 0.71 -0.26 16 19 N -0.50 -10.84 11.25 -188.13 -2.12 -12.95 16 20 C 0.12 2.55 11.57 83.53 0.97 3.52 16 21 C -0.03 -0.81 7.96 127.31 1.01 0.20 16 22 N 0.07 2.12 4.46 -49.18 -0.22 1.90 16 23 O -0.21 -6.88 16.96 18.88 0.32 -6.56 16 24 O -0.14 -3.97 19.04 18.89 0.36 -3.61 16 25 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.05 2.03 6.24 -2.39 -0.01 2.02 16 27 H 0.05 2.20 7.30 -2.39 -0.02 2.18 16 28 H 0.04 2.08 6.27 -2.39 -0.01 2.06 16 29 H 0.02 1.11 7.04 -2.39 -0.02 1.09 16 30 H 0.25 15.27 6.04 -92.71 -0.56 14.71 16 31 H 0.34 12.27 6.44 -89.70 -0.58 11.69 16 32 H 0.00 0.18 7.00 -2.39 -0.02 0.16 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.14 2.58 7.65 -2.39 -0.02 2.56 16 35 H 0.10 2.67 6.42 -2.39 -0.02 2.66 16 36 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.09 1.15 7.70 -2.39 -0.02 1.13 16 39 H 0.23 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -65.97 326.87 3.22 -62.75 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.71 Total: 18.70 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 6.32 Total: -15.76 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -6.54 Total: -106.02 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.68 Total: -10.17 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.05 Total: 50.51 kcal Total: -65.97 3.22 -62.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602840348.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.579 kcal (2) G-P(sol) polarization free energy of solvation -65.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds