Wall clock time and date at job start Tue Mar 31 2020 05:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46910 * 2 1 4 4 H 1.09001 * 109.46527 * 305.84719 * 3 2 1 5 5 C 1.50702 * 109.46759 * 185.85163 * 3 2 1 6 6 H 1.08001 * 119.99370 * 243.39586 * 5 3 2 7 7 C 1.37877 * 119.99928 * 63.40263 * 5 3 2 8 8 N 1.31520 * 119.99520 * 196.04716 * 7 5 3 9 9 Si 1.86792 * 120.00421 * 16.03912 * 7 5 3 10 10 H 1.48501 * 109.46866 * 92.76784 * 9 7 5 11 11 H 1.48499 * 109.47575 * 212.76581 * 9 7 5 12 12 H 1.48500 * 109.47230 * 332.76999 * 9 7 5 13 13 N 1.46902 * 109.47090 * 65.84739 * 3 2 1 14 14 C 1.46893 * 110.99968 * 258.53482 * 13 3 2 15 15 C 1.52997 * 109.46927 * 175.35149 * 14 13 3 16 16 N 1.46503 * 109.47350 * 179.97438 * 15 14 13 17 17 C 1.35043 * 126.39460 * 89.99905 * 16 15 14 18 18 C 1.50700 * 125.65364 * 359.73870 * 17 16 15 19 19 N 1.30496 * 108.70209 * 179.73977 * 17 16 15 20 20 C 1.34137 * 109.25243 * 359.97438 * 19 17 16 21 21 C 1.34665 * 108.02252 * 359.97438 * 20 19 17 22 22 N 1.48026 * 126.59375 * 179.97438 * 21 20 19 23 23 O 1.21803 * 120.00159 * 179.97438 * 22 21 20 24 24 O 1.21802 * 120.00078 * 0.02562 * 22 21 20 25 25 H 1.08999 * 109.46921 * 175.83710 * 1 2 3 26 26 H 1.09005 * 109.47048 * 295.83618 * 1 2 3 27 27 H 1.08996 * 109.46988 * 55.83631 * 1 2 3 28 28 H 1.09000 * 109.46815 * 239.99703 * 2 1 3 29 29 H 1.08999 * 109.46714 * 119.99552 * 2 1 3 30 30 H 0.96998 * 119.99578 * 179.97438 * 8 7 5 31 31 H 1.00903 * 110.99160 * 134.58567 * 13 3 2 32 32 H 1.08998 * 109.47346 * 55.35145 * 14 13 3 33 33 H 1.08996 * 109.47411 * 295.34967 * 14 13 3 34 34 H 1.09003 * 109.47540 * 59.99662 * 15 14 13 35 35 H 1.09007 * 109.47319 * 299.99842 * 15 14 13 36 36 H 1.08994 * 109.47051 * 89.99842 * 18 17 16 37 37 H 1.09006 * 109.47330 * 210.00309 * 18 17 16 38 38 H 1.09009 * 109.46888 * 330.00322 * 18 17 16 39 39 H 1.08004 * 125.98550 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5937 1.9856 -0.8330 5 6 3.5401 1.4450 -0.1449 6 1 4.1586 1.8361 0.6495 7 6 4.1227 0.9481 -1.2914 8 7 5.4047 0.6548 -1.3035 9 14 3.0914 0.6913 -2.8275 10 1 3.1666 1.9032 -3.6825 11 1 3.6086 -0.4790 -3.5812 12 1 1.6790 0.4458 -2.4401 13 7 1.6689 2.0931 1.2638 14 6 0.5004 2.9649 1.0838 15 6 0.0741 3.5324 2.4391 16 7 -1.0910 4.4024 2.2596 17 6 -2.3871 4.0266 2.3108 18 6 -2.8866 2.6267 2.5591 19 7 -3.1354 5.0766 2.1095 20 6 -2.3517 6.1495 1.9251 21 6 -1.0691 5.7492 2.0161 22 7 0.1332 6.6014 1.8773 23 8 1.2430 6.1107 1.9829 24 8 0.0128 7.7935 1.6585 25 1 -0.3633 -1.0250 -0.0746 26 1 -0.3633 0.4479 0.9250 27 1 -0.3633 0.5771 -0.8503 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.8146 0.3049 -2.1100 31 1 2.4477 2.6069 1.6481 32 1 -0.3204 2.3888 0.6567 33 1 0.7579 3.7836 0.4119 34 1 0.8949 4.1085 2.8664 35 1 -0.1835 2.7137 3.1111 36 1 -3.0205 2.4733 3.6298 37 1 -3.8399 2.4853 2.0497 38 1 -2.1606 1.9088 2.1772 39 1 -2.6901 7.1577 1.7367 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602840350.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:18 Heat of formation + Delta-G solvation = 59.868377 kcal Electronic energy + Delta-G solvation = -22747.290938 eV Core-core repulsion = 19308.679472 eV Total energy + Delta-G solvation = -3438.611465 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.25100 -41.78083 -37.27498 -36.66326 -34.94096 -32.69526 -32.49220 -31.59443 -29.18690 -28.66310 -26.45456 -25.57070 -23.05751 -22.30481 -22.07126 -20.80598 -19.91188 -18.88012 -18.52177 -17.85207 -17.10627 -16.73562 -15.99574 -15.78941 -14.71604 -14.48545 -14.06667 -13.96662 -13.60464 -13.21805 -13.04431 -12.94240 -12.79522 -12.34052 -12.25530 -11.78868 -11.72693 -11.66237 -11.29602 -11.12025 -10.94812 -10.82464 -10.78415 -10.63483 -10.21501 -9.97324 -9.51646 -9.35410 -9.28250 -8.53589 -7.77532 -6.23028 -4.19155 -0.08159 0.82864 1.54067 2.19894 2.31826 3.19243 3.29125 3.31581 3.73491 4.12901 4.28847 4.30965 4.65440 4.72063 4.93360 5.04044 5.05331 5.17728 5.18478 5.31112 5.42383 5.51398 5.81165 5.86435 5.89049 5.92069 6.07949 6.10779 6.42800 6.49558 6.58095 6.84832 6.86181 7.11981 7.29140 7.48036 7.52758 7.73417 8.11028 8.43500 8.84626 9.41981 10.89682 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.004974 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.906805 B = 5628.045711 C = 6479.937320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C 0.195 3.805 4 H 0.004 0.996 5 C -0.538 4.538 6 H 0.078 0.922 7 C 0.081 3.919 8 N -0.885 5.885 9 Si 0.862 3.138 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.252 1.252 13 N -0.673 5.673 14 C 0.048 3.952 15 C 0.086 3.914 16 N -0.424 5.424 17 C 0.280 3.720 18 C -0.081 4.081 19 N -0.485 5.485 20 C 0.101 3.899 21 C -0.003 4.003 22 N 0.067 4.933 23 O -0.158 6.158 24 O -0.145 6.145 25 H 0.038 0.962 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.265 0.735 31 H 0.346 0.654 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.823 4.948 7.808 19.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C 0.087 3.913 4 H 0.021 0.979 5 C -0.576 4.576 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.521 5.521 9 Si 0.688 3.312 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.176 1.176 13 N -0.305 5.305 14 C -0.083 4.083 15 C -0.035 4.035 16 N -0.108 5.108 17 C 0.017 3.983 18 C -0.139 4.139 19 N -0.205 5.205 20 C -0.056 4.056 21 C -0.200 4.200 22 N 0.585 4.415 23 O -0.371 6.371 24 O -0.358 6.358 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.165 0.835 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.110 0.890 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -18.226 3.813 7.991 20.263 hybrid contribution 1.338 0.890 -1.529 2.218 sum -16.888 4.702 6.462 18.683 Atomic orbital electron populations 1.21883 0.98807 0.99682 1.00204 1.21875 0.92529 0.99209 1.01164 1.19458 0.95861 0.90667 0.85359 0.97866 1.21170 0.89145 1.42993 1.04286 0.90381 1.24872 0.94767 0.93949 0.98678 1.69979 1.11638 1.42042 1.28463 0.87225 0.82177 0.77977 0.83773 1.20771 1.21105 1.17625 1.60554 1.07569 1.32079 1.30320 1.22256 0.97062 0.96065 0.92927 1.22517 0.85638 0.94005 1.01315 1.45323 1.09520 1.05357 1.50602 1.23795 0.78106 0.98352 0.98079 1.20529 1.03400 0.85655 1.04355 1.70725 1.31551 0.97199 1.21004 1.22516 0.85449 1.00177 0.97507 1.21713 0.88158 0.84853 1.25244 1.42306 1.00684 1.00653 0.97898 1.94620 1.10836 1.77177 1.54442 1.94572 1.92933 0.96365 1.51980 0.94330 0.93010 0.94481 0.92925 0.91988 0.92490 0.83496 0.90709 0.95236 0.86975 0.86899 0.88640 0.87837 0.89047 0.78411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.74 37.16 0.32 -2.11 16 2 C -0.11 -2.24 4.85 -26.72 -0.13 -2.37 16 3 C 0.20 4.29 1.75 -68.86 -0.12 4.17 16 4 H 0.00 0.09 6.35 -51.93 -0.33 -0.24 16 5 C -0.54 -14.33 9.03 -34.44 -0.31 -14.64 16 6 H 0.08 2.25 7.67 -52.49 -0.40 1.84 16 7 C 0.08 2.26 5.31 -17.82 -0.09 2.16 16 8 N -0.88 -26.18 13.96 55.43 0.77 -25.40 16 9 Si 0.86 20.66 25.76 -169.99 -4.38 16.28 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.25 -5.66 5.49 56.52 0.31 -5.35 16 13 N -0.67 -12.20 6.09 -107.95 -0.66 -12.85 16 14 C 0.05 0.73 5.36 -3.83 -0.02 0.71 16 15 C 0.09 1.04 5.54 -4.04 -0.02 1.02 16 16 N -0.42 -5.15 2.75 -110.33 -0.30 -5.45 16 17 C 0.28 2.98 7.90 -155.42 -1.23 1.75 16 18 C -0.08 -0.55 9.97 36.01 0.36 -0.19 16 19 N -0.48 -5.70 11.25 -10.81 -0.12 -5.82 16 20 C 0.10 1.16 11.57 -17.81 -0.21 0.96 16 21 C 0.00 -0.04 7.96 -143.13 -1.14 -1.18 16 22 N 0.07 1.00 4.45 33.10 0.15 1.15 16 23 O -0.16 -2.61 16.96 -29.46 -0.50 -3.11 16 24 O -0.14 -2.15 19.04 -29.46 -0.56 -2.72 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.75 6.66 -51.93 -0.35 0.40 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 1.16 4.88 -51.93 -0.25 0.90 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.35 6.51 7.96 -39.29 -0.31 6.20 16 32 H 0.07 1.10 6.02 -51.93 -0.31 0.79 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.11 1.45 6.42 -51.93 -0.33 1.12 16 35 H 0.11 1.11 7.67 -51.93 -0.40 0.71 16 36 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.60 7.71 -51.92 -0.40 0.20 16 39 H 0.20 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 324.53 15.07 4.89 4.89 Total: -1.00 -30.64 324.53 -8.57 -39.21 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.27 Total: 3.55 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -2.59 Total: -9.72 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.16 Total: -48.38 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -1.06 Total: -5.83 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.38 Total: 16.28 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.64 -8.57 -39.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602840350.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.077 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds