Wall clock time and date at job start Tue Mar 31 2020 06:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29026 * 124.91512 * 2 1 4 4 C 1.31790 * 117.12253 * 180.02562 * 3 2 1 5 5 C 1.50698 * 122.74901 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47033 * 87.60218 * 5 4 3 7 7 C 1.46894 * 111.00169 * 294.67749 * 6 5 4 8 8 C 1.50705 * 109.47029 * 170.00041 * 7 6 5 9 9 H 1.08001 * 119.99674 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00279 * 179.97438 * 8 7 6 11 11 N 1.31520 * 119.99767 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00296 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46703 * 90.00295 * 12 10 8 14 14 H 1.48498 * 109.47404 * 210.00200 * 12 10 8 15 15 H 1.48494 * 109.47452 * 330.00456 * 12 10 8 16 16 C 1.46900 * 110.99812 * 170.72235 * 6 5 4 17 17 C 1.53001 * 109.47235 * 288.22727 * 16 6 5 18 18 C 1.53000 * 109.47234 * 173.88174 * 17 16 6 19 19 C 1.52996 * 109.47300 * 293.88110 * 17 16 6 20 20 C 1.33639 * 114.49645 * 0.22687 * 4 3 2 21 21 C 1.50708 * 126.03141 * 179.77249 * 20 4 3 22 22 S 1.70976 * 124.91490 * 179.97438 * 2 1 3 23 23 H 1.09006 * 109.47002 * 90.00218 * 1 2 3 24 24 H 1.08990 * 109.47428 * 210.00225 * 1 2 3 25 25 H 1.09000 * 109.47241 * 330.00567 * 1 2 3 26 26 H 1.08999 * 109.47131 * 327.60431 * 5 4 3 27 27 H 1.09000 * 109.46767 * 207.60680 * 5 4 3 28 28 H 1.09001 * 109.47175 * 289.99854 * 7 6 5 29 29 H 1.09000 * 109.47115 * 50.00351 * 7 6 5 30 30 H 0.96996 * 119.99963 * 180.02562 * 11 10 8 31 31 H 1.09000 * 109.47295 * 48.22847 * 16 6 5 32 32 H 1.09000 * 109.47292 * 168.22922 * 16 6 5 33 33 H 1.08999 * 109.47017 * 53.88337 * 17 16 6 34 34 H 1.08999 * 109.46999 * 64.88848 * 18 17 16 35 35 H 1.09003 * 109.47347 * 184.89135 * 18 17 16 36 36 H 1.09004 * 109.46958 * 304.89052 * 18 17 16 37 37 H 1.09001 * 109.46977 * 60.00259 * 19 17 16 38 38 H 1.09000 * 109.47186 * 179.97438 * 19 17 16 39 39 H 1.08999 * 109.47271 * 300.00072 * 19 17 16 40 40 H 1.08996 * 109.46927 * 94.46308 * 21 20 4 41 41 H 1.09003 * 109.46663 * 214.46138 * 21 20 4 42 42 H 1.08994 * 109.47107 * 334.45929 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5513 0.8793 -0.0005 5 6 4.5308 2.0245 -0.0012 6 7 4.8056 2.4346 1.3824 7 6 3.6011 2.9858 2.0173 8 6 3.8486 3.1656 3.4930 9 1 4.8052 2.8976 3.9166 10 6 2.8542 3.6732 4.3020 11 7 1.6894 4.0000 3.7859 12 14 3.1606 3.8953 6.1312 13 1 3.7118 5.2518 6.3795 14 1 1.8822 3.7376 6.8701 15 1 4.1316 2.8734 6.5982 16 6 5.9156 3.3953 1.4361 17 6 7.2304 2.6728 1.1359 18 6 8.3643 3.6957 1.0411 19 6 7.5336 1.6780 2.2580 20 6 3.9354 -0.4007 -0.0058 21 6 5.3575 -0.8994 -0.0125 22 16 2.4856 -1.4020 0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 4.1073 2.8646 -0.5517 27 1 5.4588 1.7086 -0.4777 28 1 3.3629 3.9502 1.5687 29 1 2.7666 2.3003 1.8698 30 1 0.9900 4.3574 4.3550 31 1 5.7542 4.1787 0.6957 32 1 5.9640 3.8394 2.4304 33 1 7.1434 2.1382 0.1900 34 1 8.5087 4.1691 2.0122 35 1 9.2837 3.1923 0.7419 36 1 8.1083 4.4544 0.3015 37 1 6.7258 0.9493 2.3255 38 1 8.4701 1.1630 2.0439 39 1 7.6206 2.2127 3.2039 40 1 5.6776 -1.0982 1.0103 41 1 5.4177 -1.8175 -0.5970 42 1 6.0056 -0.1434 -0.4556 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685995068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:53 Heat of formation + Delta-G solvation = 29.712865 kcal Electronic energy + Delta-G solvation = -20905.773875 eV Core-core repulsion = 18012.147983 eV Total energy + Delta-G solvation = -2893.625892 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.66090 -37.22102 -34.09599 -33.17192 -32.09709 -29.99829 -27.97518 -26.74160 -26.57896 -24.75856 -23.71588 -22.40651 -20.57481 -19.31363 -18.29640 -17.50945 -16.25555 -15.40711 -14.99331 -14.49457 -14.27002 -13.92803 -13.85433 -13.43360 -13.13518 -13.07726 -12.86539 -12.48327 -12.32643 -12.02934 -11.89995 -11.83050 -11.72959 -11.58584 -11.22805 -11.09111 -10.76749 -10.65551 -10.61355 -10.48011 -10.19914 -9.91911 -9.65190 -9.17962 -8.99398 -8.76745 -8.33326 -8.14896 -7.15606 -5.92624 -3.93264 1.13821 1.72712 2.10489 3.26165 3.34764 3.40907 3.45153 4.47575 4.50761 5.04157 5.27640 5.32366 5.35940 5.39026 5.42294 5.45663 5.61289 5.66479 5.70179 5.72187 5.81895 5.95641 6.02434 6.08922 6.12624 6.17537 6.21671 6.29210 6.38818 6.45036 6.54771 6.59753 6.66639 6.91253 6.94288 7.47328 7.52857 7.88164 8.23643 8.25897 8.35865 8.64255 9.14555 9.69113 11.17720 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.011055 B = 0.007596 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.101652 B = 3685.451608 C = 5484.596686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.049 3.951 3 N -0.447 5.447 4 C 0.091 3.909 5 C 0.125 3.875 6 N -0.526 5.526 7 C 0.192 3.808 8 C -0.504 4.504 9 H 0.061 0.939 10 C 0.055 3.945 11 N -0.894 5.894 12 Si 0.892 3.108 13 H -0.282 1.282 14 H -0.288 1.288 15 H -0.274 1.274 16 C 0.066 3.934 17 C -0.093 4.093 18 C -0.145 4.145 19 C -0.133 4.133 20 C -0.210 4.210 21 C -0.066 4.066 22 S 0.071 5.929 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.037 0.963 27 H 0.077 0.923 28 H -0.013 1.013 29 H 0.047 0.953 30 H 0.259 0.741 31 H 0.018 0.982 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.036 0.964 39 H 0.049 0.951 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.603 -9.196 -9.450 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.230 4.230 3 N -0.161 5.161 4 C -0.040 4.040 5 C -0.006 4.006 6 N -0.250 5.250 7 C 0.067 3.933 8 C -0.543 4.543 9 H 0.079 0.921 10 C -0.146 4.146 11 N -0.534 5.534 12 Si 0.720 3.280 13 H -0.208 1.208 14 H -0.214 1.214 15 H -0.199 1.199 16 C -0.062 4.062 17 C -0.112 4.112 18 C -0.203 4.203 19 C -0.191 4.191 20 C -0.331 4.331 21 C -0.125 4.125 22 S 0.325 5.675 23 H 0.098 0.902 24 H 0.094 0.906 25 H 0.110 0.890 26 H 0.055 0.945 27 H 0.095 0.905 28 H 0.004 0.996 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.063 -10.090 -9.125 14.515 hybrid contribution 0.235 1.649 0.701 1.807 sum 5.297 -8.441 -8.424 13.049 Atomic orbital electron populations 1.20388 0.85669 1.04259 1.03130 1.26801 1.01367 0.90369 1.04502 1.66132 1.04717 1.31097 1.14201 1.19992 0.89717 0.93748 1.00560 1.20565 0.94304 0.92848 0.92856 1.62151 1.09188 1.41469 1.12239 1.19809 0.86673 0.93508 0.93340 1.21179 0.99324 1.41175 0.92620 0.92066 1.24965 0.95173 0.95972 0.98469 1.69991 1.03971 1.44104 1.35332 0.86599 0.77480 0.78343 0.85594 1.20841 1.21374 1.19888 1.22084 0.89653 0.92525 1.01924 1.21148 0.94712 0.96433 0.98860 1.21820 0.97921 0.98969 1.01579 1.21674 1.00175 0.99317 0.97888 1.25471 0.99521 0.95259 1.12856 1.20166 0.88944 1.00561 1.02808 1.83558 0.98921 1.13849 1.71140 0.90206 0.90593 0.88983 0.94492 0.90478 0.99561 0.93455 0.93171 0.96400 0.89423 0.92213 0.92729 0.93308 0.93234 0.91268 0.94532 0.93185 0.90448 0.92060 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 10.46 36.01 0.38 -0.62 16 2 C 0.05 0.84 7.39 -13.46 -0.10 0.74 16 3 N -0.45 -9.25 9.22 -8.05 -0.07 -9.32 16 4 C 0.09 1.76 5.50 -84.22 -0.46 1.30 16 5 C 0.12 2.39 5.03 -4.98 -0.03 2.36 16 6 N -0.53 -11.36 3.95 -237.52 -0.94 -12.30 16 7 C 0.19 5.17 4.58 -4.98 -0.02 5.14 16 8 C -0.50 -14.44 8.29 -34.44 -0.29 -14.72 16 9 H 0.06 1.73 7.25 -52.49 -0.38 1.35 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 12 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 16 C 0.07 1.28 4.19 -3.82 -0.02 1.26 16 17 C -0.09 -1.41 2.94 -90.62 -0.27 -1.67 16 18 C -0.14 -1.88 9.19 37.16 0.34 -1.54 16 19 C -0.13 -2.04 9.09 37.16 0.34 -1.70 16 20 C -0.21 -3.47 6.59 -35.92 -0.24 -3.70 16 21 C -0.07 -0.85 10.16 36.01 0.37 -0.48 16 22 S 0.07 1.06 23.18 -107.50 -2.49 -1.43 16 23 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 26 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 27 H 0.08 1.24 4.74 -51.93 -0.25 0.99 16 28 H -0.01 -0.40 8.12 -51.93 -0.42 -0.82 16 29 H 0.05 1.39 6.01 -51.93 -0.31 1.08 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.02 0.34 8.05 -51.93 -0.42 -0.08 16 32 H 0.09 1.89 6.59 -51.93 -0.34 1.55 16 33 H 0.06 0.86 6.41 -51.93 -0.33 0.52 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.18 7.79 -51.93 -0.40 0.78 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.94 6.58 -51.93 -0.34 0.60 16 LS Contribution 348.78 15.07 5.26 5.26 Total: -1.00 -32.14 348.78 -9.61 -41.74 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.98 Total: -2.35 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -0.09 Total: -12.13 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.28 Total: -48.23 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.49 Total: -1.43 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.14 -9.61 -41.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685995068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.457 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds