Wall clock time and date at job start Tue Mar 31 2020 06:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29031 * 124.91071 * 2 1 4 4 C 1.31785 * 117.12150 * 179.97438 * 3 2 1 5 5 C 1.50702 * 122.74845 * 180.02562 * 4 3 2 6 6 C 1.33632 * 114.49954 * 0.02562 * 4 3 2 7 7 C 1.50706 * 126.03659 * 179.97438 * 6 4 3 8 8 N 1.46899 * 109.47041 * 87.91753 * 7 6 4 9 9 C 1.46902 * 111.00237 * 75.59590 * 8 7 6 10 10 C 1.50701 * 109.47550 * 190.00112 * 9 8 7 11 11 H 1.08003 * 119.99602 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00042 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00332 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99930 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46695 * 60.00276 * 14 12 10 16 16 H 1.48503 * 109.47090 * 179.97438 * 14 12 10 17 17 H 1.48489 * 109.47241 * 300.00174 * 14 12 10 18 18 C 1.46899 * 111.00252 * 199.54774 * 8 7 6 19 19 C 1.53001 * 109.47399 * 74.96232 * 18 8 7 20 20 C 1.53007 * 109.46602 * 65.09142 * 19 18 8 21 21 C 1.52997 * 109.47415 * 185.09491 * 19 18 8 22 22 S 1.70974 * 124.92115 * 180.31845 * 2 1 3 23 23 H 1.08997 * 109.47131 * 89.97632 * 1 2 3 24 24 H 1.09004 * 109.46723 * 209.97169 * 1 2 3 25 25 H 1.08996 * 109.47484 * 329.97013 * 1 2 3 26 26 H 1.09001 * 109.47225 * 273.60403 * 5 4 3 27 27 H 1.08999 * 109.46810 * 33.60020 * 5 4 3 28 28 H 1.08995 * 109.47380 * 153.60238 * 5 4 3 29 29 H 1.09000 * 109.47028 * 327.92290 * 7 6 4 30 30 H 1.08994 * 109.47155 * 207.91971 * 7 6 4 31 31 H 1.09004 * 109.46628 * 309.99848 * 9 8 7 32 32 H 1.08999 * 109.47127 * 69.99357 * 9 8 7 33 33 H 0.96996 * 120.00340 * 180.02562 * 13 12 10 34 34 H 1.08997 * 109.47932 * 194.96442 * 18 8 7 35 35 H 1.09008 * 109.47317 * 314.96630 * 18 8 7 36 36 H 1.09005 * 109.46956 * 305.09792 * 19 18 8 37 37 H 1.09003 * 109.46593 * 180.02562 * 20 19 18 38 38 H 1.08990 * 109.47416 * 300.00436 * 20 19 18 39 39 H 1.08997 * 109.46978 * 60.00960 * 20 19 18 40 40 H 1.08998 * 109.46839 * 60.00149 * 21 19 18 41 41 H 1.09006 * 109.46944 * 180.02562 * 21 19 18 42 42 H 1.08991 * 109.47216 * 300.00170 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8795 0.0005 5 6 4.5306 2.0248 0.0012 6 6 3.9354 -0.4004 0.0004 7 6 5.3575 -0.8991 0.0004 8 7 5.8362 -1.0138 1.3845 9 6 5.2663 -2.1972 2.0424 10 6 5.5769 -2.1510 3.5163 11 1 6.1415 -1.3253 3.9236 12 6 5.1401 -3.1627 4.3449 13 7 4.4521 -4.1679 3.8491 14 14 5.5257 -3.1058 6.1718 15 1 4.9367 -1.8778 6.7639 16 1 4.9484 -4.3014 6.8370 17 1 6.9976 -3.0926 6.3669 18 6 7.3042 -1.0401 1.4334 19 6 7.8482 0.3682 1.1851 20 6 7.4234 1.2883 2.3314 21 6 9.3755 0.3191 1.1096 22 16 2.4858 -1.4019 -0.0078 23 1 -0.3633 0.0004 -1.0276 24 1 -0.3633 -0.8903 0.5134 25 1 -0.3634 0.8897 0.5143 26 1 4.7181 2.3431 -1.0243 27 1 4.1160 2.8571 0.5698 28 1 5.4661 1.7026 0.4584 29 1 5.9885 -0.1976 -0.5453 30 1 5.3999 -1.8762 -0.4808 31 1 4.1858 -2.2075 1.8989 32 1 5.6992 -3.0982 1.6079 33 1 4.1446 -4.8795 4.4321 34 1 7.6290 -1.3873 2.4142 35 1 7.6813 -1.7158 0.6656 36 1 7.4500 0.7510 0.2453 37 1 7.8105 2.2918 2.1542 38 1 6.3353 1.3233 2.3851 39 1 7.8215 0.9056 3.2711 40 1 9.6780 -0.3365 0.2930 41 1 9.7630 1.3225 0.9332 42 1 9.7735 -0.0637 2.0493 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685995764.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:10 Heat of formation + Delta-G solvation = 25.228133 kcal Electronic energy + Delta-G solvation = -20825.642233 eV Core-core repulsion = 17931.821869 eV Total energy + Delta-G solvation = -2893.820365 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.53616 -37.54576 -34.28024 -33.04518 -32.12887 -29.29125 -28.56543 -27.03649 -26.66936 -24.92842 -23.46157 -22.33025 -20.87525 -19.40954 -18.20941 -17.45587 -16.33031 -15.47021 -15.02719 -14.58312 -14.25643 -14.08502 -13.95818 -13.44488 -13.07914 -13.06461 -12.92406 -12.45191 -12.24773 -12.15711 -11.92466 -11.82908 -11.67850 -11.64455 -11.15055 -11.12909 -10.85644 -10.73473 -10.56547 -10.49402 -10.28030 -9.98336 -9.76579 -9.22250 -9.19897 -8.71450 -8.42236 -8.07789 -7.28666 -6.02508 -4.03119 1.15672 1.81683 2.24832 3.19331 3.32672 3.36912 3.39976 4.42336 4.44070 4.90635 5.26031 5.28848 5.33206 5.37888 5.44017 5.50472 5.54131 5.55425 5.67625 5.84255 5.88420 5.91255 5.94099 5.96472 6.08185 6.15246 6.20661 6.27998 6.37997 6.41192 6.49586 6.55857 6.71383 6.86560 6.96651 7.27896 7.30629 7.78891 8.07362 8.17163 8.18362 8.51540 9.03545 9.60341 11.08221 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.011536 B = 0.007392 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.498883 B = 3786.842918 C = 5469.096063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.022 3.978 3 N -0.475 5.475 4 C 0.063 3.937 5 C -0.075 4.075 6 C -0.187 4.187 7 C 0.127 3.873 8 N -0.526 5.526 9 C 0.190 3.810 10 C -0.505 4.505 11 H 0.063 0.937 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.895 3.105 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.066 3.934 19 C -0.093 4.093 20 C -0.135 4.135 21 C -0.145 4.145 22 S 0.135 5.865 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.036 0.964 31 H 0.036 0.964 32 H -0.011 1.011 33 H 0.261 0.739 34 H 0.089 0.911 35 H 0.019 0.981 36 H 0.060 0.940 37 H 0.036 0.964 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.049 0.951 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.116 8.068 -9.399 12.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.255 4.255 3 N -0.191 5.191 4 C -0.069 4.069 5 C -0.135 4.135 6 C -0.309 4.309 7 C -0.004 4.004 8 N -0.251 5.251 9 C 0.065 3.935 10 C -0.543 4.543 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.722 3.278 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.062 4.062 19 C -0.111 4.111 20 C -0.193 4.193 21 C -0.203 4.203 22 S 0.390 5.610 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.006 0.994 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.037 0.963 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.871 7.716 -9.090 11.955 hybrid contribution 0.900 -0.234 0.697 1.162 sum 0.029 7.481 -8.393 11.244 Atomic orbital electron populations 1.20336 0.85851 1.03867 1.03104 1.26781 1.01379 0.91910 1.05453 1.66081 1.04668 1.31896 1.16430 1.19959 0.89829 0.93998 1.03109 1.20368 0.96915 0.94470 1.01734 1.25598 0.99571 0.95304 1.10427 1.20408 0.88361 0.98812 0.92785 1.62080 1.06596 1.44769 1.11638 1.19833 0.95502 0.84279 0.93930 1.21082 1.34519 1.06643 0.92089 0.91855 1.24956 0.95325 0.95452 0.98723 1.69941 1.37412 1.10741 1.35527 0.86616 0.78543 0.77370 0.85224 1.20222 1.21383 1.20299 1.22095 0.87938 0.94215 1.01952 1.21160 0.94298 0.96779 0.98911 1.21708 1.02847 0.96952 0.97763 1.21813 0.96114 1.00820 1.01538 1.84163 0.97702 1.11677 1.67423 0.90280 0.90356 0.89805 0.91847 0.91293 0.89651 0.89989 0.94594 0.94564 0.99370 0.92924 0.89243 0.96305 0.92133 0.94451 0.91048 0.93124 0.93306 0.93200 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.46 36.01 0.38 -0.47 16 2 C 0.02 0.36 7.39 -13.45 -0.10 0.27 16 3 N -0.47 -8.52 10.53 -8.06 -0.08 -8.61 16 4 C 0.06 1.12 6.74 -84.23 -0.57 0.55 16 5 C -0.08 -1.10 9.91 36.01 0.36 -0.75 16 6 C -0.19 -3.43 5.57 -35.92 -0.20 -3.63 16 7 C 0.13 2.27 4.68 -4.97 -0.02 2.24 16 8 N -0.53 -10.79 3.81 -237.51 -0.90 -11.70 16 9 C 0.19 4.80 4.55 -4.97 -0.02 4.78 16 10 C -0.50 -13.89 8.24 -34.44 -0.28 -14.17 16 11 H 0.06 1.73 7.30 -52.48 -0.38 1.34 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 14 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.07 1.21 4.18 -3.82 -0.02 1.20 16 19 C -0.09 -1.37 2.79 -90.62 -0.25 -1.62 16 20 C -0.14 -2.07 8.67 37.16 0.32 -1.75 16 21 C -0.14 -1.83 9.19 37.16 0.34 -1.49 16 22 S 0.13 2.36 21.98 -107.50 -2.36 0.00 16 23 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.08 1.25 5.10 -51.93 -0.27 0.98 16 29 H 0.08 1.27 5.71 -51.93 -0.30 0.97 16 30 H 0.04 0.66 8.00 -51.93 -0.42 0.24 16 31 H 0.04 0.98 6.32 -51.93 -0.33 0.65 16 32 H -0.01 -0.31 8.12 -51.93 -0.42 -0.74 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.09 1.86 6.58 -51.93 -0.34 1.51 16 35 H 0.02 0.34 8.01 -51.92 -0.42 -0.08 16 36 H 0.06 0.85 5.94 -51.93 -0.31 0.54 16 37 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 1.24 6.95 -51.93 -0.36 0.88 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 346.06 15.07 5.21 5.21 Total: -1.00 -30.36 346.06 -9.49 -39.84 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.90 Total: -2.43 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -0.17 Total: -13.34 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.25 Total: -45.91 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.36 Total: 0.00 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.36 -9.49 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685995764.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.072 kcal (2) G-P(sol) polarization free energy of solvation -30.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds