Wall clock time and date at job start Tue Mar 31 2020 06:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29031 * 124.91071 * 2 1 4 4 C 1.31785 * 117.12150 * 179.97438 * 3 2 1 5 5 C 1.50702 * 122.74845 * 180.02562 * 4 3 2 6 6 C 1.33632 * 114.49954 * 0.02562 * 4 3 2 7 7 C 1.50706 * 126.03659 * 179.97438 * 6 4 3 8 8 N 1.46899 * 109.47041 * 87.91753 * 7 6 4 9 9 C 1.46902 * 111.00237 * 75.59590 * 8 7 6 10 10 C 1.50701 * 109.47550 * 190.00112 * 9 8 7 11 11 H 1.08003 * 119.99602 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00042 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00332 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99930 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46695 * 60.00276 * 14 12 10 16 16 H 1.48503 * 109.47090 * 179.97438 * 14 12 10 17 17 H 1.48489 * 109.47241 * 300.00174 * 14 12 10 18 18 C 1.46899 * 111.00252 * 199.54774 * 8 7 6 19 19 C 1.53001 * 109.47399 * 74.96232 * 18 8 7 20 20 C 1.53007 * 109.46602 * 65.09142 * 19 18 8 21 21 C 1.52997 * 109.47415 * 185.09491 * 19 18 8 22 22 S 1.70974 * 124.92115 * 180.31845 * 2 1 3 23 23 H 1.08997 * 109.47131 * 89.97632 * 1 2 3 24 24 H 1.09004 * 109.46723 * 209.97169 * 1 2 3 25 25 H 1.08996 * 109.47484 * 329.97013 * 1 2 3 26 26 H 1.09001 * 109.47225 * 273.60403 * 5 4 3 27 27 H 1.08999 * 109.46810 * 33.60020 * 5 4 3 28 28 H 1.08995 * 109.47380 * 153.60238 * 5 4 3 29 29 H 1.09000 * 109.47028 * 327.92290 * 7 6 4 30 30 H 1.08994 * 109.47155 * 207.91971 * 7 6 4 31 31 H 1.09004 * 109.46628 * 309.99848 * 9 8 7 32 32 H 1.08999 * 109.47127 * 69.99357 * 9 8 7 33 33 H 0.96996 * 120.00340 * 180.02562 * 13 12 10 34 34 H 1.08997 * 109.47932 * 194.96442 * 18 8 7 35 35 H 1.09008 * 109.47317 * 314.96630 * 18 8 7 36 36 H 1.09005 * 109.46956 * 305.09792 * 19 18 8 37 37 H 1.09003 * 109.46593 * 180.02562 * 20 19 18 38 38 H 1.08990 * 109.47416 * 300.00436 * 20 19 18 39 39 H 1.08997 * 109.46978 * 60.00960 * 20 19 18 40 40 H 1.08998 * 109.46839 * 60.00149 * 21 19 18 41 41 H 1.09006 * 109.46944 * 180.02562 * 21 19 18 42 42 H 1.08991 * 109.47216 * 300.00170 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8795 0.0005 5 6 4.5306 2.0248 0.0012 6 6 3.9354 -0.4004 0.0004 7 6 5.3575 -0.8991 0.0004 8 7 5.8362 -1.0138 1.3845 9 6 5.2663 -2.1972 2.0424 10 6 5.5769 -2.1510 3.5163 11 1 6.1415 -1.3253 3.9236 12 6 5.1401 -3.1627 4.3449 13 7 4.4521 -4.1679 3.8491 14 14 5.5257 -3.1058 6.1718 15 1 4.9367 -1.8778 6.7639 16 1 4.9484 -4.3014 6.8370 17 1 6.9976 -3.0926 6.3669 18 6 7.3042 -1.0401 1.4334 19 6 7.8482 0.3682 1.1851 20 6 7.4234 1.2883 2.3314 21 6 9.3755 0.3191 1.1096 22 16 2.4858 -1.4019 -0.0078 23 1 -0.3633 0.0004 -1.0276 24 1 -0.3633 -0.8903 0.5134 25 1 -0.3634 0.8897 0.5143 26 1 4.7181 2.3431 -1.0243 27 1 4.1160 2.8571 0.5698 28 1 5.4661 1.7026 0.4584 29 1 5.9885 -0.1976 -0.5453 30 1 5.3999 -1.8762 -0.4808 31 1 4.1858 -2.2075 1.8989 32 1 5.6992 -3.0982 1.6079 33 1 4.1446 -4.8795 4.4321 34 1 7.6290 -1.3873 2.4142 35 1 7.6813 -1.7158 0.6656 36 1 7.4500 0.7510 0.2453 37 1 7.8105 2.2918 2.1542 38 1 6.3353 1.3233 2.3851 39 1 7.8215 0.9056 3.2711 40 1 9.6780 -0.3365 0.2930 41 1 9.7630 1.3225 0.9332 42 1 9.7735 -0.0637 2.0493 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685995764.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:10 Heat of formation + Delta-G solvation = 7.320052 kcal Electronic energy + Delta-G solvation = -20826.418786 eV Core-core repulsion = 17931.821869 eV Total energy + Delta-G solvation = -2894.596917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.87618 -39.06191 -35.68220 -34.79710 -33.70686 -30.63249 -29.84807 -28.82317 -27.81714 -26.39962 -25.20991 -23.58972 -22.55351 -20.72462 -19.59328 -18.88316 -18.34507 -16.95835 -16.57847 -16.26311 -15.59171 -15.54135 -15.36540 -14.86694 -14.35342 -14.29601 -14.13160 -14.05440 -13.65321 -13.51530 -13.31038 -13.21381 -12.94297 -12.81618 -12.74744 -12.65987 -12.46626 -12.45371 -12.08185 -11.87648 -11.69500 -11.52179 -11.36958 -11.10841 -10.63302 -10.53753 -10.09860 -9.42046 -8.98755 -8.18491 -6.26555 -0.18574 0.48912 0.90915 1.38327 1.40878 1.48317 1.85888 2.39478 3.14037 3.24714 3.36465 3.96554 4.04366 4.10472 4.15052 4.26301 4.43084 4.46609 4.58076 4.62359 4.67022 4.74843 4.81847 4.87829 4.94040 4.96169 4.97992 5.07655 5.13783 5.15974 5.20380 5.26261 5.32544 5.38849 5.48718 5.59232 5.67211 5.73087 6.08427 6.37054 6.62099 6.83588 6.88781 7.41533 8.92049 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.011536 B = 0.007392 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.498883 B = 3786.842918 C = 5469.096063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.038 3.962 3 N -0.495 5.495 4 C 0.062 3.938 5 C -0.073 4.073 6 C -0.214 4.214 7 C 0.133 3.867 8 N -0.527 5.527 9 C 0.206 3.794 10 C -0.516 4.516 11 H 0.061 0.939 12 C 0.005 3.995 13 N -0.931 5.931 14 Si 0.960 3.040 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.267 1.267 18 C 0.066 3.934 19 C -0.083 4.083 20 C -0.131 4.131 21 C -0.140 4.140 22 S 0.094 5.906 23 H 0.106 0.894 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.026 0.974 31 H 0.017 0.983 32 H -0.046 1.046 33 H 0.263 0.737 34 H 0.059 0.941 35 H 0.021 0.979 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.035 0.965 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.339 10.065 -9.688 13.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.240 4.240 3 N -0.212 5.212 4 C -0.070 4.070 5 C -0.132 4.132 6 C -0.335 4.335 7 C 0.003 3.997 8 N -0.251 5.251 9 C 0.080 3.920 10 C -0.555 4.555 11 H 0.079 0.921 12 C -0.194 4.194 13 N -0.571 5.571 14 Si 0.785 3.215 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.192 1.192 18 C -0.062 4.062 19 C -0.102 4.102 20 C -0.188 4.188 21 C -0.198 4.198 22 S 0.350 5.650 23 H 0.124 0.876 24 H 0.108 0.892 25 H 0.112 0.888 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.129 0.871 30 H 0.044 0.956 31 H 0.035 0.965 32 H -0.028 1.028 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.039 0.961 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.392 9.729 -9.389 13.526 hybrid contribution 0.697 -0.824 0.730 1.303 sum 0.305 8.904 -8.659 12.424 Atomic orbital electron populations 1.20569 0.82694 1.04876 1.05142 1.27572 1.03051 0.90607 1.02794 1.66194 1.04921 1.32186 1.17863 1.20477 0.90409 0.94586 1.01547 1.20447 0.95986 0.93386 1.03377 1.25618 0.99474 0.95632 1.12765 1.20420 0.89024 0.99084 0.91208 1.62022 1.07839 1.41843 1.13355 1.19455 0.94298 0.84869 0.93420 1.21385 1.34186 1.06517 0.93367 0.92075 1.25803 0.95161 0.95086 1.03313 1.70070 1.38484 1.11449 1.37115 0.85585 0.78799 0.77442 0.79705 1.19782 1.20899 1.19210 1.22138 0.86658 0.96984 1.00373 1.21109 0.95893 0.93862 0.99364 1.21652 1.01252 0.98604 0.97298 1.21774 0.94022 1.02454 1.01553 1.84277 0.98958 1.13379 1.68356 0.87595 0.89200 0.88806 0.89326 0.90966 0.89690 0.87070 0.95591 0.96531 1.02800 0.92865 0.92234 0.96067 0.90500 0.91564 0.93401 0.94601 0.92497 0.90851 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.59 10.46 71.24 0.75 -0.84 16 2 C 0.04 1.20 7.39 88.52 0.65 1.85 16 3 N -0.50 -17.23 10.53 -179.40 -1.89 -19.12 16 4 C 0.06 2.13 6.74 41.52 0.28 2.41 16 5 C -0.07 -1.97 9.91 71.24 0.71 -1.26 16 6 C -0.21 -7.83 5.57 24.64 0.14 -7.70 16 7 C 0.13 4.75 4.68 85.56 0.40 5.15 16 8 N -0.53 -21.99 3.81 -905.35 -3.45 -25.44 16 9 C 0.21 10.89 4.55 85.56 0.39 11.28 16 10 C -0.52 -29.22 8.24 25.60 0.21 -29.01 16 11 H 0.06 3.41 7.30 -2.91 -0.02 3.39 16 12 C 0.00 0.26 5.46 84.65 0.46 0.72 16 13 N -0.93 -56.16 13.29 21.45 0.28 -55.87 16 14 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 15 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 18 C 0.07 2.44 4.18 86.30 0.36 2.81 16 19 C -0.08 -2.31 2.79 -10.79 -0.03 -2.34 16 20 C -0.13 -3.80 8.67 71.98 0.62 -3.17 16 21 C -0.14 -3.17 9.19 71.98 0.66 -2.51 16 22 S 0.09 3.39 21.98 -56.49 -1.24 2.15 16 23 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 27 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.08 2.29 5.10 -2.39 -0.01 2.28 16 29 H 0.11 3.26 5.71 -2.39 -0.01 3.25 16 30 H 0.03 0.98 8.00 -2.39 -0.02 0.96 16 31 H 0.02 0.94 6.32 -2.38 -0.02 0.93 16 32 H -0.05 -2.66 8.12 -2.39 -0.02 -2.68 16 33 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 34 H 0.06 2.54 6.58 -2.39 -0.02 2.52 16 35 H 0.02 0.76 8.01 -2.38 -0.02 0.74 16 36 H 0.08 1.91 5.94 -2.38 -0.01 1.89 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.05 1.61 6.95 -2.39 -0.02 1.60 16 39 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -67.07 346.06 2.32 -64.74 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.99 Total: 9.29 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 5.60 Total: -22.62 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -5.05 Total: -100.44 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.24 Total: 2.15 kcal Total: -67.07 2.32 -64.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685995764.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.063 kcal (2) G-P(sol) polarization free energy of solvation -67.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds