Wall clock time and date at job start Tue Mar 31 2020 06:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86810 * 119.99715 * 2 1 4 4 H 1.48499 * 109.46996 * 270.00105 * 3 2 1 5 5 H 1.48498 * 109.46929 * 29.99884 * 3 2 1 6 6 H 1.48502 * 109.47126 * 149.99567 * 3 2 1 7 7 C 1.37875 * 120.00515 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00179 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47120 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47160 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.46892 * 180.02562 * 11 10 9 13 13 C 1.34770 * 119.99720 * 179.97438 * 12 11 10 14 14 S 1.71204 * 120.00116 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99929 * 180.02562 * 13 12 11 16 16 C 1.46504 * 119.99891 * 174.88318 * 15 13 12 17 17 C 1.52998 * 109.47042 * 244.03987 * 16 15 13 18 18 C 1.52999 * 117.49799 * 352.15874 * 17 16 15 19 19 C 1.53008 * 117.49699 * 60.81649 * 17 16 15 20 20 C 1.52996 * 109.47082 * 124.04169 * 16 15 13 21 21 C 1.53003 * 117.50280 * 3.13714 * 20 16 15 22 22 C 1.53002 * 117.50050 * 294.47546 * 20 16 15 23 23 H 0.96997 * 120.00130 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47009 * 59.99781 * 9 7 2 25 25 H 1.09001 * 109.47152 * 299.99675 * 9 7 2 26 26 H 1.09001 * 109.46855 * 60.00303 * 10 9 7 27 27 H 1.08993 * 109.47365 * 300.00465 * 10 9 7 28 28 H 1.08994 * 109.47020 * 60.00030 * 11 10 9 29 29 H 1.09001 * 109.47166 * 300.00324 * 11 10 9 30 30 H 0.96996 * 120.00009 * 0.02562 * 12 11 10 31 31 H 0.96996 * 120.00283 * 354.87452 * 15 13 12 32 32 H 1.08994 * 109.47279 * 4.03991 * 16 15 13 33 33 H 1.08996 * 115.55277 * 206.49220 * 17 16 15 34 34 H 1.09002 * 117.50510 * 215.00069 * 18 17 16 35 35 H 1.09007 * 117.50289 * 0.02562 * 18 17 16 36 36 H 1.08994 * 117.49891 * 359.97438 * 19 17 16 37 37 H 1.08997 * 117.49601 * 144.97826 * 19 17 16 38 38 H 1.09000 * 115.54939 * 148.80449 * 20 16 15 39 39 H 1.08998 * 117.49396 * 359.97438 * 21 20 16 40 40 H 1.08988 * 117.49999 * 145.02001 * 21 20 16 41 41 H 1.09001 * 117.49940 * 214.97981 * 22 20 16 42 42 H 1.08994 * 117.49601 * 359.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4326 -6.1005 0.0018 13 6 1.9835 -7.3712 0.0030 14 16 0.3003 -7.6841 0.0030 15 7 2.8593 -8.3955 0.0040 16 6 2.3749 -9.7734 0.1185 17 6 2.8884 -10.3880 1.4221 18 6 3.9078 -9.5819 2.2296 19 6 2.4683 -9.7184 2.7322 20 6 2.8855 -10.5937 -1.0678 21 6 3.8172 -9.8957 -2.0607 22 6 2.3746 -10.2164 -2.4598 23 1 -0.4850 0.8400 -0.0004 24 1 0.6249 -2.5570 -0.8897 25 1 0.6242 -2.5567 0.8903 26 1 2.8721 -3.6042 0.8906 27 1 2.8722 -3.6042 -0.8893 28 1 0.8536 -5.0451 -0.8885 29 1 0.8541 -5.0446 0.8914 30 1 3.3863 -5.9232 0.0021 31 1 3.8104 -8.2206 -0.0710 32 1 1.2849 -9.7764 0.1200 33 1 2.9913 -11.4730 1.4218 34 1 4.6813 -10.1367 2.7606 35 1 4.2123 -8.6136 1.8323 36 1 1.8266 -8.8400 2.6653 37 1 2.2946 -10.3632 3.5937 38 1 3.0646 -11.6499 -0.8667 39 1 4.0660 -8.8520 -1.8689 40 1 4.6089 -10.4928 -2.5129 41 1 2.2180 -11.0243 -3.1745 42 1 1.6744 -9.3841 -2.5303 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734760787.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:23 Heat of formation + Delta-G solvation = 54.480807 kcal Electronic energy + Delta-G solvation = -19680.379312 eV Core-core repulsion = 16787.827439 eV Total energy + Delta-G solvation = -2892.551874 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.21144 -37.84057 -36.63424 -34.88595 -33.29706 -31.32692 -28.38186 -26.58532 -24.08652 -23.16105 -22.54295 -22.52228 -21.44085 -20.71121 -20.41688 -18.26656 -16.93372 -16.80116 -16.20085 -15.61364 -15.34007 -15.15528 -14.61529 -14.34689 -14.13909 -13.79623 -13.25982 -12.37672 -12.21763 -12.14770 -11.89069 -11.84349 -11.73340 -11.41328 -10.98550 -10.92277 -10.89981 -10.86013 -10.68633 -10.62384 -10.26117 -10.15041 -9.93728 -9.57101 -9.18852 -9.06058 -8.40762 -7.70252 -7.19267 -6.04957 -4.08855 1.49233 2.06041 2.62471 3.28310 3.34961 3.37045 3.45384 3.58272 3.60212 4.12037 4.41050 4.53493 4.65129 4.72190 4.72469 4.82907 5.01044 5.17650 5.30730 5.35337 5.38232 5.39553 5.53290 5.65834 5.68650 5.69828 5.80758 5.82350 5.90878 5.97791 5.99924 6.08770 6.39670 6.46090 6.67341 6.82865 6.93845 7.34053 7.58793 7.70151 7.92739 8.32549 8.97404 9.55599 11.06113 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.025503 B = 0.003095 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.651073 B = 9045.575492 C = 9211.273532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.026 3.974 10 C -0.122 4.122 11 C 0.119 3.881 12 N -0.674 5.674 13 C 0.562 3.438 14 S -0.647 6.647 15 N -0.687 5.687 16 C 0.188 3.812 17 C -0.158 4.158 18 C -0.181 4.181 19 C -0.169 4.169 20 C -0.158 4.158 21 C -0.182 4.182 22 C -0.169 4.169 23 H 0.262 0.738 24 H 0.021 0.979 25 H 0.022 0.978 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.394 0.606 31 H 0.395 0.605 32 H 0.147 0.853 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.476 -22.785 0.249 25.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.161 4.161 11 C -0.003 4.003 12 N -0.300 5.300 13 C 0.201 3.799 14 S -0.521 6.521 15 N -0.320 5.320 16 C 0.082 3.918 17 C -0.178 4.178 18 C -0.218 4.218 19 C -0.206 4.206 20 C -0.177 4.177 21 C -0.219 4.219 22 C -0.206 4.206 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.230 0.770 31 H 0.233 0.767 32 H 0.164 0.836 33 H 0.133 0.867 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.133 0.867 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.062 -22.811 0.268 24.547 hybrid contribution 2.365 1.278 -0.049 2.689 sum 11.427 -21.533 0.219 24.378 Atomic orbital electron populations 1.69961 1.06026 1.26787 1.50182 1.25020 0.94854 0.99281 0.95190 0.86589 0.79782 0.83469 0.78115 1.20635 1.21134 1.19937 1.21161 0.92904 0.90911 1.51403 0.92746 1.19005 0.93692 0.90437 0.97990 1.21963 0.99991 0.93305 1.00807 1.22145 0.91033 0.82647 1.04445 1.45503 1.11146 1.04091 1.69216 1.22387 0.95436 0.82148 0.79955 1.93449 0.92991 1.90777 1.74902 1.45110 1.08294 1.05891 1.72670 1.20671 1.03618 0.76451 0.91015 1.22673 1.04427 0.98860 0.91818 1.22929 0.93129 1.01574 1.04194 1.22986 0.97329 1.03479 0.96820 1.22631 1.04847 0.99716 0.90506 1.22938 0.94055 1.01120 1.03803 1.23004 0.96747 1.03910 0.96911 0.92827 0.96018 0.95991 0.92774 0.92783 0.89682 0.89653 0.76984 0.76687 0.83580 0.86656 0.88861 0.89400 0.88222 0.88669 0.86679 0.89329 0.88826 0.88687 0.88023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.42 9.11 -34.44 -0.31 -14.73 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.03 0.65 4.97 -27.88 -0.14 0.52 16 10 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 11 C 0.12 1.96 5.13 -4.04 -0.02 1.94 16 12 N -0.67 -8.50 5.56 -62.03 -0.34 -8.85 16 13 C 0.56 7.28 7.97 -86.92 -0.69 6.59 16 14 S -0.65 -11.32 26.92 -107.50 -2.89 -14.22 16 15 N -0.69 -6.34 2.61 -55.52 -0.14 -6.49 16 16 C 0.19 1.71 2.93 -67.93 -0.20 1.51 16 17 C -0.16 -1.25 5.71 -90.62 -0.52 -1.76 16 18 C -0.18 -1.39 9.82 -26.69 -0.26 -1.65 16 19 C -0.17 -1.55 10.19 -26.69 -0.27 -1.82 16 20 C -0.16 -1.21 5.74 -90.62 -0.52 -1.73 16 21 C -0.18 -1.36 9.76 -26.69 -0.26 -1.62 16 22 C -0.17 -1.49 10.23 -26.69 -0.27 -1.76 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.53 7.99 -51.93 -0.42 1.12 16 29 H 0.09 1.53 7.99 -51.93 -0.41 1.12 16 30 H 0.39 3.86 8.49 -40.82 -0.35 3.52 16 31 H 0.40 2.80 6.68 -40.82 -0.27 2.53 16 32 H 0.15 1.78 5.81 -47.06 -0.27 1.51 16 33 H 0.12 0.75 7.96 -51.93 -0.41 0.33 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.68 6.44 -51.92 -0.33 0.35 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.12 0.72 7.94 -51.93 -0.41 0.31 16 39 H 0.09 0.68 6.33 -51.93 -0.33 0.35 16 40 H 0.09 0.60 8.14 -51.94 -0.42 0.18 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -31.56 354.62 -13.01 -44.57 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.98 Total: 4.54 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -3.71 Total: -15.37 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.25 Total: -41.10 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -11.32 SS G_CDS: -2.89 Total: -14.22 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.56 -13.01 -44.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734760787.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.053 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds