Wall clock time and date at job start Tue Mar 31 2020 06:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31780 * 122.74811 * 2 1 4 4 C 1.29021 * 117.12758 * 179.72544 * 3 2 1 5 5 S 1.70980 * 110.16700 * 359.97438 * 4 3 2 6 6 C 1.33638 * 122.75189 * 179.70068 * 2 1 3 7 7 C 1.50701 * 126.03771 * 0.25061 * 6 2 1 8 8 C 1.53000 * 109.46766 * 90.00340 * 7 6 2 9 9 N 1.46906 * 109.46906 * 183.21603 * 8 7 6 10 10 C 1.46900 * 110.99864 * 214.92776 * 9 8 7 11 11 C 1.50693 * 109.46782 * 164.16857 * 10 9 8 12 12 H 1.07999 * 120.00449 * 4.85098 * 11 10 9 13 13 C 1.37882 * 119.99783 * 184.85135 * 11 10 9 14 14 N 1.31514 * 120.00230 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99900 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47227 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47619 * 119.99969 * 15 13 11 18 18 H 1.48502 * 109.47142 * 240.00045 * 15 13 11 19 19 C 1.46897 * 110.99557 * 90.97898 * 9 8 7 20 20 C 1.53002 * 109.46987 * 282.77195 * 19 9 8 21 21 C 1.53006 * 109.47115 * 182.03055 * 20 19 9 22 22 C 1.53004 * 109.47049 * 302.02437 * 20 19 9 23 23 H 1.09004 * 109.46700 * 90.03118 * 1 2 3 24 24 H 1.09000 * 109.46994 * 210.02452 * 1 2 3 25 25 H 1.08990 * 109.47560 * 330.02976 * 1 2 3 26 26 H 1.08010 * 124.92360 * 179.97438 * 4 3 2 27 27 H 1.08998 * 109.47141 * 210.00211 * 7 6 2 28 28 H 1.09001 * 109.47089 * 330.00211 * 7 6 2 29 29 H 1.09002 * 109.47099 * 303.21218 * 8 7 6 30 30 H 1.08999 * 109.47666 * 63.21523 * 8 7 6 31 31 H 1.09000 * 109.47196 * 284.17345 * 10 9 8 32 32 H 1.09002 * 109.47025 * 44.17373 * 10 9 8 33 33 H 0.96999 * 119.99899 * 180.02562 * 14 13 11 34 34 H 1.08999 * 109.47796 * 42.76972 * 19 9 8 35 35 H 1.08999 * 109.47179 * 162.77761 * 19 9 8 36 36 H 1.09001 * 109.47090 * 62.02957 * 20 19 9 37 37 H 1.08999 * 109.47512 * 59.99262 * 21 20 19 38 38 H 1.08998 * 109.46811 * 180.02562 * 21 20 19 39 39 H 1.09003 * 109.46615 * 299.99859 * 21 20 19 40 40 H 1.08997 * 109.46924 * 64.87961 * 22 20 19 41 41 H 1.09001 * 109.46655 * 184.87607 * 22 20 19 42 42 H 1.08996 * 109.47511 * 304.87727 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2198 1.1083 0.0000 4 6 3.5038 0.9820 0.0055 5 16 3.9332 -0.6730 0.0122 6 6 2.2299 -1.1239 0.0059 7 6 1.6847 -2.5288 0.0079 8 6 1.5056 -3.0084 -1.4340 9 7 0.9025 -4.3479 -1.4331 10 6 1.4257 -5.1615 -2.5386 11 6 1.1016 -6.6123 -2.2917 12 1 0.4941 -6.8933 -1.4441 13 6 1.5806 -7.5811 -3.1479 14 7 2.3208 -7.2391 -4.1797 15 14 1.1783 -9.3795 -2.8421 16 1 0.3364 -9.4983 -1.6246 17 1 0.4416 -9.9274 -4.0093 18 1 2.4375 -10.1426 -2.6490 19 6 -0.5631 -4.2652 -1.4882 20 6 -1.1053 -3.8941 -0.1064 21 6 -2.6342 -3.8575 -0.1513 22 6 -0.6500 -4.9365 0.9169 23 1 -0.3633 -0.0006 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8901 0.5133 26 1 4.2059 1.8028 0.0058 27 1 2.3810 -3.1880 0.5262 28 1 0.7217 -2.5441 0.5182 29 1 0.8543 -2.3169 -1.9685 30 1 2.4768 -3.0475 -1.9272 31 1 0.9675 -4.8409 -3.4742 32 1 2.5067 -5.0364 -2.6019 33 1 2.6575 -7.9207 -4.7822 34 1 -0.8573 -3.5036 -2.2103 35 1 -0.9704 -5.2298 -1.7911 36 1 -0.7266 -2.9132 0.1811 37 1 -3.0129 -4.8383 -0.4388 38 1 -3.0203 -3.5927 0.8330 39 1 -2.9585 -3.1148 -0.8803 40 1 0.4352 -4.9023 1.0121 41 1 -1.1065 -4.7208 1.8829 42 1 -0.9545 -5.9290 0.5847 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739913895.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:18 Heat of formation + Delta-G solvation = 29.696401 kcal Electronic energy + Delta-G solvation = -20575.760376 eV Core-core repulsion = 17682.133770 eV Total energy + Delta-G solvation = -2893.626606 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.88684 -37.81939 -34.20686 -33.51238 -32.18660 -30.18655 -27.36766 -26.69581 -26.42924 -25.03694 -24.15803 -22.15098 -20.56918 -19.48305 -18.69010 -18.02623 -16.30413 -15.93774 -15.15734 -14.90033 -14.69432 -14.24510 -13.75400 -13.57558 -13.35869 -13.14886 -12.73791 -12.59193 -12.50294 -12.14906 -12.08535 -11.96347 -11.74697 -11.37548 -11.16176 -11.05718 -10.85746 -10.75023 -10.58114 -10.45871 -10.18632 -9.73772 -9.69876 -9.58878 -9.30454 -9.09635 -8.62210 -8.44430 -7.27225 -6.02884 -4.03689 0.76619 1.42412 1.81590 2.81405 3.30251 3.38082 3.42434 4.23523 4.41088 4.73059 5.08253 5.13386 5.22188 5.26117 5.33909 5.41906 5.53366 5.57853 5.63918 5.75924 5.81303 5.87379 5.89404 5.98788 6.07963 6.16792 6.23393 6.30007 6.37291 6.40521 6.50979 6.53608 6.57668 6.88617 6.96448 7.26728 7.31870 7.73872 7.81729 8.09476 8.21175 8.53342 9.04495 9.60453 11.07915 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.017937 B = 0.004756 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.685736 B = 5885.881044 C = 6970.695597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.046 3.954 3 N -0.468 5.468 4 C 0.003 3.997 5 S 0.116 5.884 6 C -0.196 4.196 7 C -0.047 4.047 8 C 0.062 3.938 9 N -0.531 5.531 10 C 0.194 3.806 11 C -0.501 4.501 12 H 0.065 0.935 13 C 0.055 3.945 14 N -0.900 5.900 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.285 1.285 19 C 0.066 3.934 20 C -0.097 4.097 21 C -0.146 4.146 22 C -0.133 4.133 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.195 0.805 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.031 0.969 30 H 0.063 0.937 31 H -0.013 1.013 32 H 0.032 0.968 33 H 0.260 0.740 34 H 0.019 0.981 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.034 0.966 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.972 13.142 9.338 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 N -0.181 5.181 4 C -0.294 4.294 5 S 0.370 5.630 6 C -0.317 4.317 7 C -0.087 4.087 8 C -0.067 4.067 9 N -0.255 5.255 10 C 0.069 3.931 11 C -0.540 4.540 12 H 0.083 0.917 13 C -0.146 4.146 14 N -0.540 5.540 15 Si 0.723 3.277 16 H -0.196 1.196 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.062 4.062 20 C -0.116 4.116 21 C -0.204 4.204 22 C -0.190 4.190 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.212 0.788 27 H 0.099 0.901 28 H 0.114 0.886 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.005 0.995 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.037 0.963 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.053 0.947 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.977 12.863 9.615 16.089 hybrid contribution -0.985 -0.448 -0.836 1.368 sum -1.962 12.415 8.778 15.331 Atomic orbital electron populations 1.20357 0.87252 1.03030 1.02897 1.20181 0.98163 0.86194 1.03970 1.66143 1.05096 1.31815 1.15081 1.28161 0.95244 1.00155 1.05884 1.84145 1.07893 1.03155 1.67844 1.25973 0.94551 1.01386 1.09800 1.20480 1.01765 0.87004 0.99451 1.22082 0.99640 0.91220 0.93801 1.61942 1.04497 1.10340 1.48704 1.19789 0.95278 0.92098 0.85927 1.21195 1.31605 0.90654 1.10565 0.91714 1.24983 0.95301 0.99149 0.95204 1.69965 1.35448 1.33456 1.15084 0.86485 0.78103 0.85010 0.78080 1.19640 1.21199 1.21083 1.22161 0.88894 1.00982 0.94164 1.21337 0.94264 0.99224 0.96785 1.21830 0.96179 1.01636 1.00749 1.21667 1.02337 0.98733 0.96262 0.90819 0.90527 0.91029 0.78831 0.90082 0.88645 0.95068 0.91894 0.99517 0.95018 0.93031 0.96297 0.89960 0.91668 0.92684 0.93230 0.93314 0.91303 0.94709 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.06 36.00 0.36 -0.51 16 2 C 0.05 0.63 6.74 -84.23 -0.57 0.06 16 3 N -0.47 -6.48 10.53 -11.90 -0.13 -6.61 16 4 C 0.00 0.04 12.23 51.58 0.63 0.67 16 5 S 0.12 1.40 23.22 -107.50 -2.50 -1.10 16 6 C -0.20 -2.69 5.84 -35.92 -0.21 -2.90 16 7 C -0.05 -0.68 5.36 -27.88 -0.15 -0.83 16 8 C 0.06 1.08 5.04 -3.82 -0.02 1.06 16 9 N -0.53 -10.64 3.53 -236.07 -0.83 -11.48 16 10 C 0.19 4.88 4.66 -4.98 -0.02 4.85 16 11 C -0.50 -13.63 8.41 -34.44 -0.29 -13.92 16 12 H 0.06 1.74 7.56 -52.49 -0.40 1.34 16 13 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 14 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 15 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 16 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C 0.07 1.20 4.25 -3.82 -0.02 1.19 16 20 C -0.10 -1.41 2.48 -90.61 -0.22 -1.64 16 21 C -0.15 -1.83 9.19 37.16 0.34 -1.49 16 22 C -0.13 -2.01 8.81 37.16 0.33 -1.68 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.08 0.82 5.80 -51.93 -0.30 0.52 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.19 1.52 8.06 -52.48 -0.42 1.09 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.10 1.31 3.50 -51.93 -0.18 1.13 16 29 H 0.03 0.53 7.43 -51.93 -0.39 0.14 16 30 H 0.06 1.17 7.40 -51.93 -0.38 0.78 16 31 H -0.01 -0.35 8.05 -51.93 -0.42 -0.77 16 32 H 0.03 0.86 7.61 -51.93 -0.40 0.47 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.02 0.34 7.58 -51.93 -0.39 -0.06 16 35 H 0.08 1.68 6.95 -51.93 -0.36 1.32 16 36 H 0.07 0.88 4.28 -51.93 -0.22 0.66 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 1.13 7.55 -51.93 -0.39 0.74 16 41 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 345.16 15.07 5.20 5.20 Total: -1.00 -29.65 345.16 -9.24 -38.90 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -6.77 Total: -1.85 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 0.07 Total: -13.72 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.22 Total: -43.77 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.50 Total: -1.10 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.65 -9.24 -38.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739913895.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.594 kcal (2) G-P(sol) polarization free energy of solvation -29.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds