Wall clock time and date at job start Tue Mar 31 2020 06:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31780 * 122.74811 * 2 1 4 4 C 1.29021 * 117.12758 * 179.72544 * 3 2 1 5 5 S 1.70980 * 110.16700 * 359.97438 * 4 3 2 6 6 C 1.33638 * 122.75189 * 179.70068 * 2 1 3 7 7 C 1.50701 * 126.03771 * 0.25061 * 6 2 1 8 8 C 1.53000 * 109.46766 * 90.00340 * 7 6 2 9 9 N 1.46906 * 109.46906 * 183.21603 * 8 7 6 10 10 C 1.46900 * 110.99864 * 214.92776 * 9 8 7 11 11 C 1.50693 * 109.46782 * 164.16857 * 10 9 8 12 12 H 1.07999 * 120.00449 * 4.85098 * 11 10 9 13 13 C 1.37882 * 119.99783 * 184.85135 * 11 10 9 14 14 N 1.31514 * 120.00230 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99900 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47227 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47619 * 119.99969 * 15 13 11 18 18 H 1.48502 * 109.47142 * 240.00045 * 15 13 11 19 19 C 1.46897 * 110.99557 * 90.97898 * 9 8 7 20 20 C 1.53002 * 109.46987 * 282.77195 * 19 9 8 21 21 C 1.53006 * 109.47115 * 182.03055 * 20 19 9 22 22 C 1.53004 * 109.47049 * 302.02437 * 20 19 9 23 23 H 1.09004 * 109.46700 * 90.03118 * 1 2 3 24 24 H 1.09000 * 109.46994 * 210.02452 * 1 2 3 25 25 H 1.08990 * 109.47560 * 330.02976 * 1 2 3 26 26 H 1.08010 * 124.92360 * 179.97438 * 4 3 2 27 27 H 1.08998 * 109.47141 * 210.00211 * 7 6 2 28 28 H 1.09001 * 109.47089 * 330.00211 * 7 6 2 29 29 H 1.09002 * 109.47099 * 303.21218 * 8 7 6 30 30 H 1.08999 * 109.47666 * 63.21523 * 8 7 6 31 31 H 1.09000 * 109.47196 * 284.17345 * 10 9 8 32 32 H 1.09002 * 109.47025 * 44.17373 * 10 9 8 33 33 H 0.96999 * 119.99899 * 180.02562 * 14 13 11 34 34 H 1.08999 * 109.47796 * 42.76972 * 19 9 8 35 35 H 1.08999 * 109.47179 * 162.77761 * 19 9 8 36 36 H 1.09001 * 109.47090 * 62.02957 * 20 19 9 37 37 H 1.08999 * 109.47512 * 59.99262 * 21 20 19 38 38 H 1.08998 * 109.46811 * 180.02562 * 21 20 19 39 39 H 1.09003 * 109.46615 * 299.99859 * 21 20 19 40 40 H 1.08997 * 109.46924 * 64.87961 * 22 20 19 41 41 H 1.09001 * 109.46655 * 184.87607 * 22 20 19 42 42 H 1.08996 * 109.47511 * 304.87727 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2198 1.1083 0.0000 4 6 3.5038 0.9820 0.0055 5 16 3.9332 -0.6730 0.0122 6 6 2.2299 -1.1239 0.0059 7 6 1.6847 -2.5288 0.0079 8 6 1.5056 -3.0084 -1.4340 9 7 0.9025 -4.3479 -1.4331 10 6 1.4257 -5.1615 -2.5386 11 6 1.1016 -6.6123 -2.2917 12 1 0.4941 -6.8933 -1.4441 13 6 1.5806 -7.5811 -3.1479 14 7 2.3208 -7.2391 -4.1797 15 14 1.1783 -9.3795 -2.8421 16 1 0.3364 -9.4983 -1.6246 17 1 0.4416 -9.9274 -4.0093 18 1 2.4375 -10.1426 -2.6490 19 6 -0.5631 -4.2652 -1.4882 20 6 -1.1053 -3.8941 -0.1064 21 6 -2.6342 -3.8575 -0.1513 22 6 -0.6500 -4.9365 0.9169 23 1 -0.3633 -0.0006 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8901 0.5133 26 1 4.2059 1.8028 0.0058 27 1 2.3810 -3.1880 0.5262 28 1 0.7217 -2.5441 0.5182 29 1 0.8543 -2.3169 -1.9685 30 1 2.4768 -3.0475 -1.9272 31 1 0.9675 -4.8409 -3.4742 32 1 2.5067 -5.0364 -2.6019 33 1 2.6575 -7.9207 -4.7822 34 1 -0.8573 -3.5036 -2.2103 35 1 -0.9704 -5.2298 -1.7911 36 1 -0.7266 -2.9132 0.1811 37 1 -3.0129 -4.8383 -0.4388 38 1 -3.0203 -3.5927 0.8330 39 1 -2.9585 -3.1148 -0.8803 40 1 0.4352 -4.9023 1.0121 41 1 -1.1065 -4.7208 1.8829 42 1 -0.9545 -5.9290 0.5847 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739913895.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:17 Heat of formation + Delta-G solvation = 12.767623 kcal Electronic energy + Delta-G solvation = -20576.494463 eV Core-core repulsion = 17682.133770 eV Total energy + Delta-G solvation = -2894.360693 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.89954 -39.29973 -35.58578 -35.06621 -33.87529 -31.35201 -29.11048 -27.83454 -27.70493 -26.34460 -25.45959 -23.74647 -22.12679 -20.80436 -19.71040 -19.03070 -18.40967 -17.23202 -16.55192 -16.36661 -16.03322 -15.56421 -15.28389 -14.76991 -14.59083 -14.32612 -14.21486 -13.78951 -13.66769 -13.56267 -13.45188 -13.19050 -12.99538 -12.84930 -12.74195 -12.53243 -12.38840 -12.25305 -12.00727 -11.92724 -11.67578 -11.37848 -11.21971 -10.94682 -10.60983 -10.59017 -10.18333 -9.63907 -8.97208 -8.18070 -6.26957 -0.21549 0.46405 0.85176 1.40811 1.41902 1.54958 1.82029 2.41246 3.12801 3.22891 3.39269 3.91024 4.00462 4.14110 4.23987 4.28210 4.34184 4.37019 4.49768 4.57703 4.68034 4.72124 4.77006 4.92020 4.95012 4.95759 4.97829 5.10795 5.16198 5.19837 5.21053 5.26362 5.30474 5.38456 5.43206 5.64290 5.69615 5.74672 6.09361 6.41407 6.65743 6.76538 6.89753 7.42360 8.93030 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.017937 B = 0.004756 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.685736 B = 5885.881044 C = 6970.695597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.045 3.955 3 N -0.495 5.495 4 C 0.020 3.980 5 S 0.122 5.878 6 C -0.224 4.224 7 C -0.029 4.029 8 C 0.067 3.933 9 N -0.531 5.531 10 C 0.209 3.791 11 C -0.511 4.511 12 H 0.065 0.935 13 C 0.001 3.999 14 N -0.937 5.937 15 Si 0.965 3.035 16 H -0.262 1.262 17 H -0.281 1.281 18 H -0.280 1.280 19 C 0.067 3.933 20 C -0.089 4.089 21 C -0.142 4.142 22 C -0.130 4.130 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.231 0.769 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.035 0.965 30 H 0.042 0.958 31 H -0.043 1.043 32 H 0.003 0.997 33 H 0.263 0.737 34 H 0.021 0.979 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.849 14.001 11.059 18.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 N -0.209 5.209 4 C -0.278 4.278 5 S 0.376 5.624 6 C -0.346 4.346 7 C -0.069 4.069 8 C -0.063 4.063 9 N -0.254 5.254 10 C 0.083 3.917 11 C -0.549 4.549 12 H 0.083 0.917 13 C -0.197 4.197 14 N -0.578 5.578 15 Si 0.790 3.210 16 H -0.186 1.186 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.061 4.061 20 C -0.107 4.107 21 C -0.200 4.200 22 C -0.187 4.187 23 H 0.093 0.907 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.247 0.753 27 H 0.091 0.909 28 H 0.125 0.875 29 H 0.054 0.946 30 H 0.061 0.939 31 H -0.026 1.026 32 H 0.021 0.979 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.865 13.732 11.355 17.915 hybrid contribution -0.655 -0.600 -1.394 1.653 sum -2.520 13.132 9.961 16.674 Atomic orbital electron populations 1.20439 0.86051 1.03965 1.03210 1.20530 0.99215 0.86098 1.02754 1.66231 1.06025 1.31910 1.16757 1.28830 0.95182 1.00721 1.03019 1.84143 1.06919 1.03744 1.67595 1.25848 0.95656 1.00840 1.12227 1.20181 1.02278 0.87520 0.96887 1.22075 0.98343 0.89758 0.96091 1.61932 1.05902 1.11579 1.45975 1.19426 0.93340 0.92578 0.86359 1.21475 1.31309 0.91730 1.10416 0.91705 1.25872 0.95080 1.03853 0.94865 1.70094 1.36606 1.35016 1.16119 0.85399 0.78043 0.79275 0.78307 1.18591 1.20649 1.20617 1.22205 0.87394 0.99604 0.96888 1.21281 0.95828 0.99688 0.93906 1.21799 0.94135 1.01584 1.02472 1.21629 1.01427 0.97857 0.97784 0.90716 0.89622 0.90062 0.75295 0.90920 0.87534 0.94630 0.93887 1.02582 0.97932 0.92858 0.96124 0.92781 0.90000 0.93533 0.90823 0.92430 0.92977 0.91848 0.94814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.62 10.06 71.23 0.72 -0.90 16 2 C 0.05 1.17 6.74 41.52 0.28 1.45 16 3 N -0.49 -12.72 10.53 -191.55 -2.02 -14.74 16 4 C 0.02 0.41 12.23 130.66 1.60 2.01 16 5 S 0.12 2.79 23.22 -56.49 -1.31 1.48 16 6 C -0.22 -5.95 5.84 24.64 0.14 -5.81 16 7 C -0.03 -0.82 5.36 29.85 0.16 -0.66 16 8 C 0.07 2.35 5.04 86.30 0.44 2.79 16 9 N -0.53 -21.90 3.53 -900.80 -3.18 -25.07 16 10 C 0.21 11.06 4.66 85.55 0.40 11.46 16 11 C -0.51 -28.59 8.41 25.60 0.22 -28.38 16 12 H 0.06 3.56 7.56 -2.91 -0.02 3.54 16 13 C 0.00 0.04 5.46 84.66 0.46 0.51 16 14 N -0.94 -56.60 13.29 21.45 0.28 -56.32 16 15 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 16 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 19 C 0.07 2.46 4.25 86.30 0.37 2.82 16 20 C -0.09 -2.43 2.48 -10.79 -0.03 -2.46 16 21 C -0.14 -3.21 9.19 71.98 0.66 -2.55 16 22 C -0.13 -3.74 8.81 71.98 0.63 -3.11 16 23 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.09 1.60 5.80 -2.39 -0.01 1.58 16 25 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.23 2.80 8.06 -2.91 -0.02 2.78 16 27 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.11 2.74 3.50 -2.39 -0.01 2.73 16 29 H 0.04 1.22 7.43 -2.39 -0.02 1.20 16 30 H 0.04 1.67 7.40 -2.39 -0.02 1.65 16 31 H -0.04 -2.51 8.05 -2.39 -0.02 -2.53 16 32 H 0.00 0.15 7.61 -2.39 -0.02 0.13 16 33 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 34 H 0.02 0.74 7.58 -2.39 -0.02 0.72 16 35 H 0.05 2.27 6.95 -2.39 -0.02 2.26 16 36 H 0.08 2.00 4.28 -2.39 -0.01 1.99 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 40 H 0.05 1.67 7.55 -2.39 -0.02 1.65 16 41 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.03 1.08 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -65.42 345.16 2.84 -62.58 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 0.99 Total: 8.58 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 6.05 Total: -22.83 kcal Atomic # 7 Polarization: -91.22 SS G_CDS: -4.91 Total: -96.13 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.31 Total: 1.48 kcal Total: -65.42 2.84 -62.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739913895.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.347 kcal (2) G-P(sol) polarization free energy of solvation -65.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds