Wall clock time and date at job start Tue Mar 31 2020 06:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47342 * 2 1 4 4 N 1.29019 * 124.91912 * 94.91604 * 3 2 1 5 5 C 1.31781 * 117.12748 * 179.97438 * 4 3 2 6 6 C 1.50698 * 122.75066 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.47257 * 276.76898 * 6 5 4 8 8 C 1.46898 * 111.00304 * 191.37514 * 7 6 5 9 9 C 1.50704 * 109.47139 * 157.62501 * 8 7 6 10 10 H 1.08001 * 119.99620 * 354.64542 * 9 8 7 11 11 C 1.37874 * 119.99874 * 174.63912 * 9 8 7 12 12 N 1.31517 * 120.00329 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99989 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46820 * 90.00211 * 13 11 9 15 15 H 1.48496 * 109.47148 * 210.00408 * 13 11 9 16 16 H 1.48496 * 109.46903 * 330.00714 * 13 11 9 17 17 C 1.46905 * 110.99795 * 67.42370 * 7 6 5 18 18 C 1.53000 * 109.46996 * 196.44487 * 17 7 6 19 19 C 1.52997 * 109.47451 * 60.03488 * 18 17 7 20 20 C 1.52995 * 109.47181 * 180.02562 * 18 17 7 21 21 C 1.33639 * 114.49853 * 0.24085 * 5 4 3 22 22 S 1.70984 * 124.91562 * 274.92133 * 3 2 1 23 23 H 1.08997 * 109.47249 * 64.96213 * 1 2 3 24 24 H 1.09005 * 109.47343 * 184.96667 * 1 2 3 25 25 H 1.09002 * 109.47247 * 304.96493 * 1 2 3 26 26 H 1.09003 * 109.47159 * 239.99678 * 2 1 3 27 27 H 1.09006 * 109.46918 * 120.00017 * 2 1 3 28 28 H 1.09000 * 109.47269 * 156.77560 * 6 5 4 29 29 H 1.08997 * 109.47312 * 36.76644 * 6 5 4 30 30 H 1.08999 * 109.47270 * 277.62696 * 8 7 6 31 31 H 1.08997 * 109.47131 * 37.62738 * 8 7 6 32 32 H 0.97001 * 120.00067 * 180.02562 * 12 11 9 33 33 H 1.08997 * 109.47072 * 316.43795 * 17 7 6 34 34 H 1.08992 * 109.47460 * 76.44251 * 17 7 6 35 35 H 1.09010 * 109.47133 * 300.03415 * 18 17 7 36 36 H 1.08991 * 109.47289 * 65.33056 * 19 18 17 37 37 H 1.09000 * 109.47208 * 185.32839 * 19 18 17 38 38 H 1.09002 * 109.47212 * 305.32277 * 19 18 17 39 39 H 1.08998 * 109.47359 * 64.91888 * 20 18 17 40 40 H 1.09007 * 109.47462 * 184.91763 * 20 18 17 41 41 H 1.09002 * 109.47290 * 304.91957 * 20 18 17 42 42 H 1.08002 * 126.03650 * 179.77029 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.3641 2.0868 1.0540 5 6 2.7854 3.3227 0.8760 6 6 3.2040 4.2137 2.0170 7 7 2.0153 4.8405 2.6104 8 6 2.3942 5.9134 3.5395 9 6 1.2403 6.8692 3.7006 10 1 0.3499 6.7465 3.1018 11 6 1.3213 7.9002 4.6124 12 7 2.4057 8.0499 5.3413 13 14 -0.1093 9.0847 4.8126 14 1 -1.0367 8.5696 5.8517 15 1 0.4041 10.4161 5.2234 16 1 -0.8327 9.2098 3.5217 17 6 1.1704 3.8407 3.2772 18 6 -0.2216 4.4283 3.5181 19 6 -0.8509 4.8147 2.1781 20 6 -1.1013 3.3873 4.2131 21 6 2.8057 3.7230 -0.3989 22 16 2.2452 2.3835 -1.3969 23 1 -0.3633 0.4349 -0.9311 24 1 -0.3634 -1.0238 0.0890 25 1 -0.3634 0.5889 0.8422 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8758 4.9877 1.6460 29 1 3.7168 3.6191 2.7730 30 1 2.6471 5.4826 4.5083 31 1 3.2570 6.4489 3.1437 32 1 2.4625 8.7750 5.9830 33 1 1.0870 2.9562 2.6458 34 1 1.6184 3.5647 4.2317 35 1 -0.1382 5.3133 4.1490 36 1 -1.0214 3.9168 1.5844 37 1 -1.8009 5.3191 2.3549 38 1 -0.1789 5.4837 1.6406 39 1 -0.7005 3.1764 5.2045 40 1 -2.1165 3.7732 4.3062 41 1 -1.1139 2.4704 3.6238 42 1 3.1128 4.6954 -0.7547 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739913928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:22 Heat of formation + Delta-G solvation = 33.858534 kcal Electronic energy + Delta-G solvation = -20852.935359 eV Core-core repulsion = 17959.489236 eV Total energy + Delta-G solvation = -2893.446122 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.83054 -37.19915 -34.37098 -33.38899 -32.44934 -29.84128 -27.54342 -26.36309 -26.11008 -25.38467 -23.81090 -21.70930 -20.70655 -19.52567 -18.84600 -17.40049 -16.33467 -15.45443 -15.18287 -14.61529 -14.59608 -14.35210 -13.81984 -13.67114 -13.47179 -12.98958 -12.66498 -12.42107 -12.25988 -12.09521 -11.83453 -11.65547 -11.49072 -11.25962 -11.18263 -11.13978 -10.96910 -10.65282 -10.44527 -10.11639 -10.00515 -9.84323 -9.54476 -9.30009 -9.15614 -9.03180 -8.51479 -8.33877 -7.19129 -5.98479 -3.96363 0.92237 1.53745 1.90794 3.02228 3.33442 3.40157 3.44230 4.14341 4.45860 4.86922 5.03932 5.09075 5.18303 5.34610 5.43061 5.53187 5.60102 5.66622 5.77791 5.79750 5.83215 6.02953 6.04744 6.07784 6.21416 6.23808 6.38048 6.44911 6.50160 6.56740 6.64771 6.81343 6.93522 7.22492 7.29511 7.38756 7.53700 7.90761 7.98998 8.15833 8.26753 8.58878 9.10651 9.64662 11.11863 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.004963 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.723795 B = 5640.833379 C = 6193.293473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C 0.047 3.953 4 N -0.460 5.460 5 C 0.091 3.909 6 C 0.125 3.875 7 N -0.528 5.528 8 C 0.192 3.808 9 C -0.499 4.499 10 H 0.077 0.923 11 C 0.053 3.947 12 N -0.900 5.900 13 Si 0.890 3.110 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.273 1.273 17 C 0.074 3.926 18 C -0.106 4.106 19 C -0.126 4.126 20 C -0.142 4.142 21 C -0.238 4.238 22 S 0.084 5.916 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.039 0.961 30 H -0.001 1.001 31 H 0.022 0.978 32 H 0.260 0.740 33 H 0.067 0.933 34 H 0.018 0.982 35 H 0.112 0.888 36 H 0.028 0.972 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.040 0.960 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.766 -14.109 -11.619 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 C -0.232 4.232 4 N -0.175 5.175 5 C -0.040 4.040 6 C -0.006 4.006 7 N -0.253 5.253 8 C 0.067 3.933 9 C -0.538 4.538 10 H 0.095 0.905 11 C -0.147 4.147 12 N -0.540 5.540 13 Si 0.718 3.282 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.197 1.197 17 C -0.055 4.055 18 C -0.124 4.124 19 C -0.183 4.183 20 C -0.200 4.200 21 C -0.378 4.378 22 S 0.338 5.662 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.017 0.983 31 H 0.040 0.960 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.036 0.964 35 H 0.129 0.871 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.131 -14.171 -12.415 18.960 hybrid contribution 0.046 1.005 1.561 1.857 sum -2.085 -13.166 -10.854 17.190 Atomic orbital electron populations 1.21774 0.93646 1.02363 1.02791 1.20167 0.96607 0.87897 1.03863 1.26959 1.03619 1.01598 0.90980 1.66105 1.13265 1.07096 1.31028 1.20351 0.98949 0.90157 0.94535 1.20603 0.93626 0.94301 0.92038 1.62121 1.15419 1.10993 1.36751 1.19814 0.96700 0.87982 0.88832 1.21372 1.02112 1.10123 1.20163 0.90529 1.24992 0.95891 0.97789 0.96067 1.69963 1.27193 1.32131 1.24691 0.86606 0.82618 0.80452 0.78475 1.20752 1.21401 1.19736 1.22032 0.93538 0.93978 0.95910 1.21449 0.93189 0.99955 0.97846 1.21620 0.99397 0.99901 0.97375 1.21823 0.99420 0.98842 0.99913 1.26751 1.11633 1.03686 0.95696 1.83725 1.61807 1.06664 1.14036 0.92429 0.91635 0.91771 0.90012 0.89019 0.89749 0.94263 0.98344 0.95957 0.93073 0.91487 0.96403 0.87061 0.95335 0.94753 0.90783 0.93516 0.93477 0.94091 0.80670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.89 37.16 0.37 -0.98 16 2 C -0.04 -0.43 6.52 -27.88 -0.18 -0.62 16 3 C 0.05 0.63 6.64 -13.46 -0.09 0.54 16 4 N -0.46 -7.51 8.87 -8.06 -0.07 -7.58 16 5 C 0.09 1.53 5.71 -84.23 -0.48 1.05 16 6 C 0.13 2.35 5.39 -4.98 -0.03 2.32 16 7 N -0.53 -11.34 3.58 -237.52 -0.85 -12.19 16 8 C 0.19 4.87 4.77 -4.97 -0.02 4.85 16 9 C -0.50 -13.45 6.83 -34.44 -0.24 -13.69 16 10 H 0.08 2.03 4.80 -52.49 -0.25 1.78 16 11 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 12 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 13 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 C 0.07 1.52 4.27 -3.82 -0.02 1.50 16 18 C -0.11 -2.13 2.39 -90.62 -0.22 -2.35 16 19 C -0.13 -2.41 8.29 37.16 0.31 -2.10 16 20 C -0.14 -2.42 9.19 37.15 0.34 -2.08 16 21 C -0.24 -3.49 11.11 29.12 0.32 -3.17 16 22 S 0.08 1.02 23.18 -107.50 -2.49 -1.47 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.50 7.72 -51.93 -0.40 1.10 16 29 H 0.04 0.75 8.11 -51.93 -0.42 0.33 16 30 H 0.00 -0.04 7.72 -51.93 -0.40 -0.44 16 31 H 0.02 0.60 7.66 -51.93 -0.40 0.20 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.07 1.33 5.72 -51.93 -0.30 1.03 16 34 H 0.02 0.39 7.78 -51.93 -0.40 -0.01 16 35 H 0.11 2.62 5.16 -51.92 -0.27 2.35 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 1.57 6.56 -51.93 -0.34 1.23 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.18 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 345.28 15.07 5.20 5.20 Total: -1.00 -29.42 345.28 -9.49 -38.91 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.97 Total: -0.31 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -0.03 Total: -13.34 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.18 Total: -45.44 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.42 -9.49 -38.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739913928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.769 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds