Wall clock time and date at job start Tue Mar 31 2020 06:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00207 * 2 1 4 4 H 1.48499 * 109.47355 * 273.36532 * 3 2 1 5 5 H 1.48506 * 109.46971 * 33.36501 * 3 2 1 6 6 H 1.48502 * 109.47600 * 153.36432 * 3 2 1 7 7 C 1.37879 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00148 * 353.93448 * 7 2 1 9 9 C 1.50702 * 119.99870 * 174.21630 * 7 2 1 10 10 C 1.53005 * 115.54932 * 294.56620 * 9 7 2 11 11 O 1.45196 * 109.47073 * 294.97291 * 10 9 7 12 12 C 1.34232 * 117.00079 * 183.73532 * 11 10 9 13 13 O 1.20825 * 119.99417 * 5.17067 * 12 11 10 14 14 C 1.50702 * 119.99959 * 185.16419 * 12 11 10 15 15 C 1.53001 * 109.46659 * 185.59248 * 14 12 11 16 16 C 1.53004 * 109.46858 * 180.02562 * 15 14 12 17 17 C 1.53178 * 109.54393 * 294.55734 * 16 15 14 18 18 C 1.53091 * 109.16284 * 183.15398 * 17 16 15 19 19 O 1.42904 * 109.41605 * 57.60623 * 18 17 16 20 20 C 1.42905 * 114.09769 * 298.84046 * 19 18 17 21 21 C 1.53095 * 109.41303 * 61.15692 * 20 19 18 22 22 C 1.53006 * 117.49739 * 148.89927 * 9 7 2 23 23 C 1.52999 * 117.50065 * 80.23673 * 9 7 2 24 24 H 0.96993 * 120.00026 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46796 * 54.97540 * 10 9 7 26 26 H 1.08995 * 109.46847 * 174.97624 * 10 9 7 27 27 H 1.08996 * 109.47074 * 305.59405 * 14 12 11 28 28 H 1.09000 * 109.46581 * 65.59136 * 14 12 11 29 29 H 1.08998 * 109.46990 * 299.99865 * 15 14 12 30 30 H 1.08994 * 109.47342 * 60.00350 * 15 14 12 31 31 H 1.09007 * 109.53883 * 54.82263 * 16 15 14 32 32 H 1.08998 * 109.51826 * 303.05846 * 17 16 15 33 33 H 1.08998 * 109.52344 * 63.24294 * 17 16 15 34 34 H 1.08999 * 109.47502 * 297.62277 * 18 17 16 35 35 H 1.09003 * 109.47668 * 177.58635 * 18 17 16 36 36 H 1.08997 * 109.47945 * 301.18236 * 20 19 18 37 37 H 1.08995 * 109.49224 * 181.14412 * 20 19 18 38 38 H 1.09000 * 109.52174 * 182.48101 * 21 20 19 39 39 H 1.08998 * 109.52050 * 62.29996 * 21 20 19 40 40 H 1.09002 * 117.49972 * 359.97438 * 22 9 7 41 41 H 1.09004 * 117.49442 * 145.02024 * 22 9 7 42 42 H 1.08997 * 117.50233 * 214.97736 * 23 9 7 43 43 H 1.08998 * 117.49960 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4255 2.0875 -1.3976 5 1 1.4840 2.6310 0.7700 6 1 3.5805 1.4207 0.6277 7 6 2.0045 -1.1941 0.0005 8 1 1.4690 -2.1268 0.0998 9 6 3.5058 -1.1974 -0.1310 10 6 4.0523 -0.6896 -1.4668 11 8 3.6432 -1.5892 -2.5306 12 6 4.1073 -1.3271 -3.7625 13 8 4.9047 -0.4350 -3.9305 14 6 3.6340 -2.1457 -4.9360 15 6 4.4130 -1.7392 -6.1885 16 6 3.9320 -2.5698 -7.3801 17 6 4.2872 -4.0427 -7.1548 18 6 3.8732 -4.8535 -8.3856 19 8 4.5249 -4.3262 -9.5430 20 6 4.1934 -2.9662 -9.8304 21 6 4.6203 -2.0796 -8.6576 22 6 4.2733 -2.3240 0.5639 23 6 4.3258 -0.9012 1.1263 24 1 -0.4850 0.8400 -0.0004 25 1 3.6604 0.3083 -1.6639 26 1 5.1406 -0.6503 -1.4227 27 1 3.8003 -3.2033 -4.7319 28 1 2.5703 -1.9694 -5.0964 29 1 4.2466 -0.6815 -6.3926 30 1 5.4765 -1.9154 -6.0281 31 1 2.8520 -2.4657 -7.4848 32 1 5.3619 -4.1386 -7.0000 33 1 3.7574 -4.4152 -6.2781 34 1 2.7929 -4.7900 -8.5160 35 1 4.1625 -5.8954 -8.2486 36 1 3.1173 -2.8781 -9.9797 37 1 4.7132 -2.6484 -10.7343 38 1 4.3288 -1.0482 -8.8557 39 1 5.7017 -2.1358 -8.5333 40 1 3.6924 -3.0625 1.1165 41 1 5.1678 -2.7030 0.0696 42 1 5.2548 -0.3449 1.0018 43 1 3.7794 -0.7034 2.0485 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:31 Heat of formation + Delta-G solvation = -129.881021 kcal Electronic energy + Delta-G solvation = -22333.098171 eV Core-core repulsion = 18957.506147 eV Total energy + Delta-G solvation = -3375.592024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.11813 -39.51848 -37.21384 -35.80902 -35.22681 -32.16905 -31.59644 -31.13095 -27.66113 -26.15923 -25.08663 -23.81036 -22.50728 -21.63099 -20.29952 -20.03422 -19.17255 -17.26779 -16.79301 -16.35191 -16.21501 -16.13802 -15.39827 -15.25215 -14.89337 -14.71204 -14.16568 -13.85727 -13.54932 -13.04736 -12.71565 -12.61455 -12.35729 -12.32371 -12.18514 -11.90199 -11.57929 -11.36410 -11.09754 -10.99117 -10.91877 -10.65262 -10.54065 -10.49095 -10.37619 -10.04752 -9.96577 -9.74054 -9.53341 -9.09332 -8.70786 -8.52336 -6.15562 -4.15964 2.63376 3.16877 3.23708 3.34102 3.38703 3.63890 4.36290 4.41675 4.47616 4.58154 4.75362 4.81676 4.92398 5.02332 5.09920 5.14022 5.18393 5.25609 5.34155 5.43775 5.49434 5.54591 5.60530 5.64402 5.68240 5.78212 5.85469 5.86632 5.91891 5.97691 6.10934 6.11803 6.22015 6.32762 6.43612 6.63319 6.85190 6.94284 7.05372 7.15939 7.66732 8.27106 8.46208 8.88144 9.46931 10.96327 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025862 B = 0.003406 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.398093 B = 8219.280517 C = 8409.318183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.079 3.921 3 Si 0.860 3.140 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.249 1.249 7 C -0.478 4.478 8 H 0.080 0.920 9 C -0.008 4.008 10 C 0.106 3.894 11 O -0.329 6.329 12 C 0.453 3.547 13 O -0.527 6.527 14 C -0.116 4.116 15 C -0.101 4.101 16 C -0.090 4.090 17 C -0.156 4.156 18 C 0.060 3.940 19 O -0.386 6.386 20 C 0.061 3.939 21 C -0.151 4.151 22 C -0.175 4.175 23 C -0.182 4.182 24 H 0.265 0.735 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.124 -6.210 -15.646 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.124 4.124 3 Si 0.687 3.313 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.172 1.172 7 C -0.515 4.515 8 H 0.098 0.902 9 C -0.009 4.009 10 C 0.033 3.967 11 O -0.244 6.244 12 C 0.296 3.704 13 O -0.418 6.418 14 C -0.153 4.153 15 C -0.139 4.139 16 C -0.109 4.109 17 C -0.194 4.194 18 C -0.017 4.017 19 O -0.305 6.305 20 C -0.016 4.016 21 C -0.189 4.189 22 C -0.212 4.212 23 C -0.220 4.220 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.314 -5.939 -15.740 18.765 hybrid contribution 0.213 1.363 0.290 1.409 sum 8.526 -4.576 -15.451 18.231 Atomic orbital electron populations 1.69885 1.06243 1.27094 1.49879 1.24917 0.94568 0.98846 0.94022 0.87131 0.81709 0.84002 0.78443 1.20579 1.21382 1.17243 1.20235 0.86436 0.94710 1.50111 0.90201 1.19336 0.95176 0.99692 0.86723 1.22932 0.96816 0.91621 0.85348 1.86582 1.67630 1.53612 1.16538 1.23734 0.78572 0.82831 0.85225 1.90603 1.33134 1.32023 1.86002 1.21421 1.02706 1.00727 0.90495 1.21443 1.00176 1.00431 0.91807 1.21225 1.00465 0.94694 0.94481 1.22347 1.02835 0.95331 0.98861 1.22601 0.96465 0.97738 0.84876 1.87922 1.69810 1.26843 1.45921 1.22578 0.99664 0.81852 0.97525 1.22238 1.01711 0.99927 0.95001 1.22789 1.01489 0.91807 1.05160 1.23084 1.00973 0.98406 0.99524 0.92497 0.92232 0.93224 0.87912 0.87574 0.90750 0.91057 0.90623 0.90831 0.90234 0.93126 0.88902 0.93206 0.89023 0.90691 0.90881 0.89309 0.90855 0.91090 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 2 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 3 Si 0.86 21.26 24.98 -169.99 -4.25 17.01 16 4 H -0.28 -6.96 7.02 56.52 0.40 -6.57 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.25 -5.74 5.72 56.52 0.32 -5.41 16 7 C -0.48 -13.24 9.33 -34.44 -0.32 -13.56 16 8 H 0.08 2.41 8.06 -52.48 -0.42 1.98 16 9 C -0.01 -0.19 1.06 -155.65 -0.17 -0.36 16 10 C 0.11 2.40 5.00 37.16 0.19 2.58 16 11 O -0.33 -7.06 10.15 -39.26 -0.40 -7.46 16 12 C 0.45 8.33 7.94 36.01 0.29 8.62 16 13 O -0.53 -10.80 15.66 -18.75 -0.29 -11.10 16 14 C -0.12 -1.50 5.58 -27.88 -0.16 -1.65 16 15 C -0.10 -1.14 4.00 -26.73 -0.11 -1.25 16 16 C -0.09 -0.81 2.27 -90.44 -0.21 -1.02 16 17 C -0.16 -1.33 5.10 -26.59 -0.14 -1.47 16 18 C 0.06 0.50 6.84 37.20 0.25 0.75 16 19 O -0.39 -3.92 10.77 -35.23 -0.38 -4.30 16 20 C 0.06 0.49 6.84 37.21 0.25 0.75 16 21 C -0.15 -1.27 5.42 -26.59 -0.14 -1.41 16 22 C -0.18 -3.53 9.96 -26.69 -0.27 -3.80 16 23 C -0.18 -3.79 8.02 -26.69 -0.21 -4.00 16 24 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.06 1.43 5.07 -51.93 -0.26 1.17 16 26 H 0.05 1.03 7.95 -51.93 -0.41 0.62 16 27 H 0.10 1.13 6.66 -51.93 -0.35 0.78 16 28 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.63 6.75 -51.93 -0.35 0.27 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 LS Contribution 343.03 15.07 5.17 5.17 Total: -1.00 -31.87 343.03 -7.56 -39.43 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.35 Total: 0.99 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -0.83 Total: -13.66 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.77 Total: -26.09 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -1.07 Total: -22.86 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.25 Total: 17.01 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.87 -7.56 -39.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.453 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds