Wall clock time and date at job start Tue Mar 31 2020 06:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00006 * 2 1 4 4 H 1.48506 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47206 * 299.99798 * 3 2 1 6 6 H 1.48507 * 109.47024 * 59.99946 * 3 2 1 7 7 C 1.37880 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99617 * 186.71673 * 7 2 1 9 9 C 1.50697 * 120.00432 * 6.72855 * 7 2 1 10 10 C 1.52996 * 115.54925 * 278.99508 * 9 7 2 11 11 O 1.45204 * 109.46728 * 320.79418 * 10 9 7 12 12 C 1.34236 * 116.99706 * 180.02562 * 11 10 9 13 13 O 1.20827 * 120.00188 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.99732 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.46905 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47184 * 180.02562 * 15 14 12 17 17 H 1.09001 * 109.47752 * 54.99960 * 16 15 14 18 18 C 1.53087 * 109.48275 * 175.02344 * 16 15 14 19 19 C 1.53173 * 109.16552 * 177.59165 * 18 16 15 20 20 C 1.53179 * 109.03652 * 303.02249 * 19 18 16 21 21 C 1.53091 * 109.16509 * 56.98048 * 20 19 18 22 22 O 1.42904 * 109.48017 * 294.98133 * 16 15 14 23 23 C 1.53002 * 117.49876 * 64.66069 * 9 7 2 24 24 C 1.52999 * 60.02975 * 107.48127 * 23 9 7 25 25 H 0.96996 * 119.99839 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47394 * 80.79172 * 10 9 7 27 27 H 1.08999 * 109.47385 * 200.80050 * 10 9 7 28 28 H 1.08994 * 109.47071 * 300.00370 * 14 12 11 29 29 H 1.08998 * 109.46736 * 60.00347 * 14 12 11 30 30 H 1.09000 * 109.47774 * 300.00486 * 15 14 12 31 31 H 1.09004 * 109.47332 * 60.00209 * 15 14 12 32 32 H 1.08999 * 109.52079 * 297.50042 * 18 16 15 33 33 H 1.09005 * 109.52080 * 57.62204 * 18 16 15 34 34 H 1.09002 * 109.54252 * 62.88412 * 19 18 16 35 35 H 1.08993 * 109.54820 * 183.15224 * 19 18 16 36 36 H 1.09005 * 109.52305 * 176.88128 * 20 19 18 37 37 H 1.08997 * 109.51989 * 297.00896 * 20 19 18 38 38 H 1.08996 * 109.48322 * 62.37036 * 21 20 19 39 39 H 1.08989 * 109.48366 * 182.39996 * 21 20 19 40 40 H 1.09000 * 117.49631 * 214.98745 * 23 9 7 41 41 H 1.09000 * 117.49855 * 359.97438 * 23 9 7 42 42 H 1.08997 * 117.49722 * 107.50483 * 24 23 9 43 43 H 1.09000 * 117.49224 * 252.51547 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0790 -1.1972 0.1099 9 6 1.2589 -2.4948 -0.1518 10 6 0.6078 -3.0353 1.1228 11 8 1.4918 -2.8072 2.2520 12 6 1.0657 -3.2266 3.4539 13 8 -0.0100 -3.7667 3.5589 14 6 1.9296 -3.0247 4.6721 15 6 1.2156 -3.5877 5.9026 16 6 2.0924 -3.3821 7.1395 17 1 2.3497 -2.3269 7.2313 18 6 1.3281 -3.8317 8.3875 19 6 2.2334 -3.6794 9.6136 20 6 3.5143 -4.4900 9.3928 21 6 4.1941 -4.0150 8.1060 22 8 3.2876 -4.1547 7.0101 23 6 0.5325 -2.7418 -1.4755 24 6 1.8126 -3.5141 -1.1505 25 1 -0.4850 0.8400 -0.0004 26 1 -0.3388 -2.5223 1.2931 27 1 0.4270 -4.1046 1.0132 28 1 2.8790 -3.5419 4.5340 29 1 2.1134 -1.9598 4.8147 30 1 0.2663 -3.0701 6.0405 31 1 1.0314 -4.6526 5.7603 32 1 0.4389 -3.2139 8.5122 33 1 1.0340 -4.8756 8.2781 34 1 2.4866 -2.6282 9.7516 35 1 1.7152 -4.0501 10.4979 36 1 4.1885 -4.3429 10.2366 37 1 3.2654 -5.5476 9.3054 38 1 4.4791 -2.9681 8.2106 39 1 5.0836 -4.6171 7.9212 40 1 -0.4091 -3.2897 -1.4383 41 1 0.5936 -1.9634 -2.2361 42 1 1.7133 -4.5701 -0.8995 43 1 2.7160 -3.2435 -1.6970 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744278634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:06 Heat of formation + Delta-G solvation = -133.126012 kcal Electronic energy + Delta-G solvation = -22304.042395 eV Core-core repulsion = 18928.309658 eV Total energy + Delta-G solvation = -3375.732738 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.86928 -39.34013 -36.77269 -35.19686 -33.98119 -33.77419 -31.93343 -30.34517 -27.13337 -25.77052 -25.10299 -24.01662 -21.90958 -21.16260 -20.51508 -19.75558 -19.21587 -17.00148 -16.68051 -16.43186 -15.92800 -15.65462 -15.17598 -14.80827 -14.63800 -14.54605 -13.92563 -13.76999 -13.56573 -12.95160 -12.86336 -12.40015 -12.08238 -12.00640 -11.80263 -11.51834 -11.36609 -11.26898 -10.98973 -10.92910 -10.86723 -10.81368 -10.48003 -10.42059 -10.30925 -9.91903 -9.68396 -9.59681 -9.46093 -8.84916 -8.44426 -8.11395 -6.02942 -4.06024 2.93404 3.29583 3.37803 3.42277 3.49749 3.64440 4.42495 4.52208 4.55820 4.62734 4.71876 4.98523 5.05995 5.17478 5.20223 5.26462 5.28178 5.35720 5.45644 5.49879 5.55624 5.65918 5.71228 5.77954 5.86040 5.88653 6.01122 6.03904 6.13493 6.24095 6.28098 6.38649 6.53030 6.69512 6.81230 7.01985 7.11875 7.24189 7.38382 7.54750 7.90821 8.38667 8.62277 8.93923 9.58478 11.07393 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020870 B = 0.003571 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.312911 B = 7838.938502 C = 8418.397392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.069 3.931 3 Si 0.891 3.109 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.480 4.480 8 H 0.063 0.937 9 C 0.038 3.962 10 C 0.118 3.882 11 O -0.324 6.324 12 C 0.452 3.548 13 O -0.532 6.532 14 C -0.112 4.112 15 C -0.099 4.099 16 C 0.090 3.910 17 H 0.061 0.939 18 C -0.151 4.151 19 C -0.123 4.123 20 C -0.157 4.157 21 C 0.060 3.940 22 O -0.376 6.376 23 C -0.153 4.153 24 C -0.208 4.208 25 H 0.259 0.741 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.107 -6.531 16.818 18.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.518 4.518 8 H 0.081 0.919 9 C 0.038 3.962 10 C 0.045 3.955 11 O -0.238 6.238 12 C 0.296 3.704 13 O -0.424 6.424 14 C -0.149 4.149 15 C -0.136 4.136 16 C 0.033 3.967 17 H 0.079 0.921 18 C -0.188 4.188 19 C -0.160 4.160 20 C -0.195 4.195 21 C -0.017 4.017 22 O -0.295 6.295 23 C -0.191 4.191 24 C -0.246 4.246 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.126 0.874 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.665 -6.666 16.626 18.510 hybrid contribution 0.131 1.055 0.221 1.086 sum 4.796 -5.611 16.847 18.393 Atomic orbital electron populations 1.70008 1.05919 1.26425 1.49657 1.24974 0.94800 0.98971 0.94618 0.86546 0.80324 0.83708 0.77508 1.19596 1.21033 1.21101 1.20343 0.93078 0.88204 1.50172 0.91869 1.18798 0.98029 0.94331 0.85056 1.22661 0.92389 0.96798 0.83683 1.86586 1.48797 1.72632 1.15824 1.23627 0.85751 0.74986 0.86006 1.90583 1.23386 1.41372 1.87056 1.21278 0.99564 1.04303 0.89800 1.21431 0.97645 1.03304 0.91212 1.22157 0.85315 0.94668 0.94582 0.92097 1.22200 0.98898 1.02983 0.94755 1.21590 0.96070 1.00323 0.98053 1.22199 0.97718 1.01006 0.98558 1.22543 0.92372 1.00510 0.86240 1.87972 1.30051 1.68776 1.42719 1.22583 0.93213 1.01569 1.01743 1.23099 0.97964 0.95627 1.07865 0.93107 0.91077 0.94497 0.87428 0.88132 0.89627 0.90223 0.90695 0.90861 0.91836 0.91570 0.91118 0.91080 0.93240 0.88947 0.91643 0.89610 0.91500 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.14 13.12 55.43 0.73 -24.42 16 2 C 0.07 1.90 5.41 -17.82 -0.10 1.80 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.48 -13.18 8.20 -34.44 -0.28 -13.46 16 8 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 9 C 0.04 0.96 1.72 -155.63 -0.27 0.70 16 10 C 0.12 2.88 5.54 37.16 0.21 3.09 16 11 O -0.32 -7.57 9.59 -39.27 -0.38 -7.95 16 12 C 0.45 9.13 7.96 36.01 0.29 9.42 16 13 O -0.53 -11.75 15.73 -18.75 -0.29 -12.04 16 14 C -0.11 -1.68 5.71 -27.88 -0.16 -1.84 16 15 C -0.10 -1.28 4.21 -26.73 -0.11 -1.39 16 16 C 0.09 0.98 2.64 -26.69 -0.07 0.91 16 17 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 18 C -0.15 -1.38 5.42 -26.60 -0.14 -1.52 16 19 C -0.12 -0.95 6.03 -26.55 -0.16 -1.11 16 20 C -0.16 -1.19 6.14 -26.59 -0.16 -1.35 16 21 C 0.06 0.53 6.84 37.20 0.25 0.78 16 22 O -0.38 -4.44 9.94 -35.23 -0.35 -4.79 16 23 C -0.15 -3.59 9.71 -26.73 -0.26 -3.85 16 24 C -0.21 -4.57 9.89 -26.70 -0.26 -4.84 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.07 1.88 8.13 -51.93 -0.42 1.46 16 27 H 0.04 0.84 7.94 -51.93 -0.41 0.42 16 28 H 0.11 1.53 7.82 -51.93 -0.41 1.12 16 29 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 31 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.71 8.14 -51.94 -0.42 0.28 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 42 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 43 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 LS Contribution 354.80 15.07 5.35 5.35 Total: -1.00 -30.73 354.80 -8.74 -39.48 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.54 Total: 0.89 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -1.23 Total: -12.65 kcal Atomic # 7 Polarization: -25.14 SS G_CDS: 0.73 Total: -24.42 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -1.02 Total: -24.78 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.73 -8.74 -39.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744278634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.648 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds