Wall clock time and date at job start Tue Mar 31 2020 06:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99708 * 2 1 4 4 H 1.48497 * 109.47169 * 269.99427 * 3 2 1 5 5 H 1.48496 * 109.47476 * 29.99976 * 3 2 1 6 6 H 1.48504 * 109.46800 * 150.00020 * 3 2 1 7 7 C 1.37871 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99823 * 185.93278 * 7 2 1 9 9 C 1.50693 * 120.00211 * 5.65566 * 7 2 1 10 10 C 1.53004 * 115.55310 * 279.66504 * 9 7 2 11 11 O 1.45200 * 109.47109 * 294.88990 * 10 9 7 12 12 C 1.34227 * 116.99681 * 179.97438 * 11 10 9 13 13 O 1.20826 * 120.00485 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99690 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.47132 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.47046 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.47731 * 305.02136 * 16 15 14 18 18 C 1.53097 * 109.47744 * 185.00355 * 16 15 14 19 19 C 1.53181 * 109.15893 * 182.40988 * 18 16 15 20 20 C 1.53168 * 109.03920 * 56.97686 * 19 18 16 21 21 C 1.53092 * 109.16620 * 303.02107 * 20 19 18 22 22 O 1.42898 * 109.41326 * 57.60744 * 21 20 19 23 23 C 1.52997 * 117.50267 * 133.95595 * 9 7 2 24 24 C 1.52997 * 60.00145 * 252.51477 * 23 9 7 25 25 H 0.96998 * 120.00219 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47035 * 54.88277 * 10 9 7 27 27 H 1.08999 * 109.47552 * 174.88401 * 10 9 7 28 28 H 1.09003 * 109.47696 * 300.00218 * 14 12 11 29 29 H 1.09003 * 109.47181 * 60.00340 * 14 12 11 30 30 H 1.08998 * 109.47533 * 300.00128 * 15 14 12 31 31 H 1.09000 * 109.47118 * 60.00819 * 15 14 12 32 32 H 1.08999 * 109.52109 * 302.31309 * 18 16 15 33 33 H 1.08994 * 109.52329 * 62.50192 * 18 16 15 34 34 H 1.08999 * 109.54153 * 176.85053 * 19 18 16 35 35 H 1.08998 * 109.54122 * 297.01951 * 19 18 16 36 36 H 1.09003 * 109.52280 * 62.92535 * 20 19 18 37 37 H 1.09008 * 109.52513 * 183.10892 * 20 19 18 38 38 H 1.09006 * 109.48092 * 177.59142 * 21 20 19 39 39 H 1.09003 * 109.47956 * 297.62433 * 21 20 19 40 40 H 1.09006 * 117.49353 * 0.02562 * 23 9 7 41 41 H 1.09002 * 117.50451 * 145.02036 * 23 9 7 42 42 H 1.09008 * 117.49411 * 252.50962 * 24 23 9 43 43 H 1.08996 * 117.50167 * 107.49128 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0802 -1.1964 0.0972 9 6 1.2566 -2.4960 -0.1275 10 6 0.6127 -3.0165 1.1592 11 8 1.6498 -3.3468 2.1201 12 6 1.2491 -3.8202 3.3105 13 8 0.0708 -3.9538 3.5420 14 6 2.2690 -4.1852 4.3582 15 6 1.5534 -4.6940 5.6112 16 6 2.5888 -5.0639 6.6751 17 1 3.2981 -5.7792 6.2588 18 6 1.8814 -5.6890 7.8804 19 6 2.9171 -6.0011 8.9650 20 6 3.6609 -4.7132 9.3311 21 6 4.2995 -4.1258 8.0698 22 8 3.2860 -3.8879 7.0909 23 6 1.8031 -3.5307 -1.1131 24 6 0.5219 -2.7622 -1.4429 25 1 -0.4850 0.8400 -0.0004 26 1 -0.0379 -2.2479 1.5766 27 1 0.0259 -3.9078 0.9371 28 1 2.9242 -4.9658 3.9714 29 1 2.8614 -3.3057 4.6106 30 1 0.8986 -3.9131 5.9980 31 1 0.9608 -5.5734 5.3593 32 1 1.1430 -4.9896 8.2724 33 1 1.3855 -6.6101 7.5743 34 1 2.4132 -6.3948 9.8478 35 1 3.6261 -6.7393 8.5904 36 1 2.9584 -3.9940 9.7524 37 1 4.4376 -4.9364 10.0626 38 1 4.7943 -3.1864 8.3166 39 1 5.0314 -4.8287 7.6718 40 1 2.7039 -3.2699 -1.6686 41 1 1.7042 -4.5826 -0.8449 42 1 -0.4200 -3.3085 -1.3917 43 1 0.5796 -1.9957 -2.2157 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744278635.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:13 Heat of formation + Delta-G solvation = -134.430347 kcal Electronic energy + Delta-G solvation = -22216.740826 eV Core-core repulsion = 18840.951528 eV Total energy + Delta-G solvation = -3375.789298 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.91197 -39.38044 -36.80651 -35.22753 -34.01421 -33.79625 -31.95654 -30.37615 -27.14941 -25.82446 -25.09700 -24.03226 -21.95291 -21.15895 -20.53710 -19.79735 -19.21584 -17.02487 -16.70667 -16.46133 -16.01869 -15.65672 -15.21442 -14.82119 -14.68461 -14.55746 -13.90486 -13.87214 -13.58483 -12.94592 -12.89695 -12.43813 -12.08589 -11.96297 -11.81003 -11.55818 -11.39005 -11.31038 -10.97912 -10.96902 -10.88518 -10.81046 -10.51768 -10.44132 -10.28015 -9.94054 -9.75986 -9.60887 -9.47585 -8.80579 -8.46967 -8.18014 -6.04607 -4.09601 2.87467 3.30993 3.38026 3.41216 3.42952 3.62714 4.41585 4.49234 4.54047 4.60880 4.69744 4.95582 5.01102 5.14408 5.17576 5.24607 5.28747 5.33564 5.43006 5.47968 5.53451 5.64484 5.67214 5.76103 5.81391 5.86174 5.99316 6.02667 6.11073 6.24760 6.27470 6.37014 6.57900 6.69349 6.75949 7.02935 7.10893 7.34138 7.37942 7.50574 7.89082 8.39267 8.54237 8.91661 9.56137 11.05062 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021269 B = 0.003473 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.134460 B = 8060.943492 C = 8821.722481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.068 3.932 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.489 4.489 8 H 0.063 0.937 9 C 0.040 3.960 10 C 0.115 3.885 11 O -0.339 6.339 12 C 0.453 3.547 13 O -0.528 6.528 14 C -0.112 4.112 15 C -0.099 4.099 16 C 0.091 3.909 17 H 0.060 0.940 18 C -0.151 4.151 19 C -0.122 4.122 20 C -0.157 4.157 21 C 0.060 3.940 22 O -0.375 6.375 23 C -0.204 4.204 24 C -0.151 4.151 25 H 0.261 0.739 26 H 0.078 0.922 27 H 0.036 0.964 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.049 0.951 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.500 -11.524 15.417 20.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.527 4.527 8 H 0.081 0.919 9 C 0.039 3.961 10 C 0.042 3.958 11 O -0.254 6.254 12 C 0.296 3.704 13 O -0.419 6.419 14 C -0.150 4.150 15 C -0.137 4.137 16 C 0.033 3.967 17 H 0.078 0.922 18 C -0.189 4.189 19 C -0.160 4.160 20 C -0.195 4.195 21 C -0.017 4.017 22 O -0.294 6.294 23 C -0.242 4.242 24 C -0.189 4.189 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.935 -11.229 15.359 19.930 hybrid contribution 0.246 0.669 0.119 0.723 sum 6.182 -10.560 15.477 19.730 Atomic orbital electron populations 1.69985 1.05921 1.26715 1.49278 1.25012 0.94860 0.99096 0.94502 0.86573 0.80006 0.83231 0.78117 1.20601 1.21239 1.19694 1.20403 0.93030 0.88335 1.50926 0.91851 1.18772 0.98303 0.93970 0.85006 1.22846 0.87552 0.97435 0.87941 1.86515 1.42025 1.73263 1.23567 1.23613 0.89345 0.74057 0.83354 1.90599 1.19654 1.51348 1.80255 1.21292 0.97189 1.04305 0.92164 1.21438 0.96809 1.03019 0.92418 1.22146 0.93550 0.87367 0.93618 0.92200 1.22207 0.98775 1.01683 0.96206 1.21586 0.98196 0.97313 0.98904 1.22203 1.00703 0.98034 0.98584 1.22550 0.89900 1.01183 0.88026 1.87992 1.50977 1.31767 1.58674 1.22962 0.97878 0.95709 1.07612 1.22580 0.93220 1.01669 1.01421 0.92904 0.90324 0.94547 0.88396 0.87187 0.90051 0.89705 0.90797 0.90739 0.91575 0.91882 0.91023 0.91094 0.88890 0.93278 0.90081 0.91525 0.91630 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.27 13.10 55.43 0.73 -24.54 16 2 C 0.07 1.89 5.42 -17.82 -0.10 1.80 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.49 -13.55 8.75 -34.45 -0.30 -13.85 16 8 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 9 C 0.04 1.01 1.53 -155.66 -0.24 0.77 16 10 C 0.12 2.83 5.29 37.16 0.20 3.03 16 11 O -0.34 -7.68 10.16 -39.25 -0.40 -8.08 16 12 C 0.45 8.90 7.96 36.01 0.29 9.19 16 13 O -0.53 -11.55 15.73 -18.75 -0.29 -11.85 16 14 C -0.11 -1.60 5.71 -27.88 -0.16 -1.76 16 15 C -0.10 -1.25 4.21 -26.73 -0.11 -1.36 16 16 C 0.09 0.95 2.64 -26.68 -0.07 0.88 16 17 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 18 C -0.15 -1.33 5.42 -26.59 -0.14 -1.47 16 19 C -0.12 -0.91 6.03 -26.55 -0.16 -1.07 16 20 C -0.16 -1.18 6.14 -26.60 -0.16 -1.34 16 21 C 0.06 0.53 6.84 37.21 0.25 0.78 16 22 O -0.37 -4.44 9.94 -35.23 -0.35 -4.79 16 23 C -0.20 -4.50 9.95 -26.73 -0.27 -4.77 16 24 C -0.15 -3.55 9.68 -26.73 -0.26 -3.81 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.08 2.14 8.12 -51.93 -0.42 1.72 16 27 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 28 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.11 1.58 7.82 -51.93 -0.41 1.18 16 30 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 31 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.07 1.44 8.14 -51.92 -0.42 1.01 16 43 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -30.95 355.71 -8.77 -39.72 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.55 Total: 0.84 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -1.23 Total: -12.98 kcal Atomic # 7 Polarization: -25.27 SS G_CDS: 0.73 Total: -24.54 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -1.04 Total: -24.72 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.95 -8.77 -39.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744278635.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.714 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds