Wall clock time and date at job start Tue Mar 31 2020 05:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.31077 * 126.65626 * 59.68706 * 4 2 1 6 6 N 1.28844 * 107.98428 * 179.89869 * 5 4 2 7 7 N 1.28731 * 109.40046 * 0.37206 * 6 5 4 8 8 N 1.29018 * 108.81375 * 359.77197 * 7 6 5 9 9 C 1.46493 * 126.44250 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47236 * 269.96845 * 9 8 7 11 11 O 1.20832 * 119.99739 * 0.02562 * 10 9 8 12 12 O 1.34224 * 120.00521 * 179.97438 * 10 9 8 13 13 C 1.45198 * 117.00521 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47071 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46830 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.47337 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99735 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00519 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99475 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00201 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47274 * 59.99608 * 20 18 16 22 22 H 1.48500 * 109.46965 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46817 * 299.99332 * 20 18 16 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 1.09002 * 109.47287 * 29.97378 * 9 8 7 32 32 H 1.09006 * 109.47353 * 149.97480 * 9 8 7 33 33 H 1.09002 * 109.46921 * 300.00531 * 13 12 10 34 34 H 1.09007 * 109.46801 * 60.00554 * 13 12 10 35 35 H 1.09002 * 109.47442 * 299.99918 * 14 13 12 36 36 H 1.08995 * 109.47047 * 60.00797 * 14 13 12 37 37 H 1.09000 * 109.47606 * 300.00263 * 15 14 13 38 38 H 1.09007 * 109.46874 * 60.00365 * 15 14 13 39 39 H 0.97007 * 119.99823 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7929 -0.3817 -2.4764 6 7 2.3979 -1.2296 -3.2349 7 7 3.0106 -2.0951 -2.5050 8 7 2.8093 -1.8091 -1.2631 9 6 3.3291 -2.5420 -0.1061 10 6 2.3474 -3.6137 0.2923 11 8 1.3191 -3.7515 -0.3272 12 8 2.6156 -4.4159 1.3345 13 6 1.6251 -5.4262 1.6608 14 6 2.1019 -6.2367 2.8678 15 6 1.0579 -7.3009 3.2120 16 6 1.5277 -8.0997 4.4003 17 1 2.4759 -7.8709 4.8640 18 6 0.7471 -9.1225 4.8957 19 7 -0.4077 -9.4007 4.3314 20 14 1.3292 -10.1122 6.3693 21 1 1.5144 -9.2068 7.5317 22 1 0.3160 -11.1451 6.7033 23 1 2.6198 -10.7710 6.0444 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 4.2830 -3.0012 -0.3655 32 1 3.4721 -1.8528 0.7263 33 1 0.6779 -4.9426 1.8996 34 1 1.4890 -6.0906 0.8074 35 1 3.0493 -6.7203 2.6294 36 1 2.2377 -5.5722 3.7210 37 1 0.1107 -6.8170 3.4505 38 1 0.9217 -7.9656 2.3588 39 1 -0.9571 -10.1201 4.6802 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747028727.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:08 Heat of formation + Delta-G solvation = 10.821442 kcal Electronic energy + Delta-G solvation = -21641.069546 eV Core-core repulsion = 18200.331246 eV Total energy + Delta-G solvation = -3440.738300 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.48116 -40.67580 -37.16342 -36.50517 -35.66605 -34.16056 -31.97244 -31.72283 -29.85736 -27.63363 -27.15928 -24.75625 -24.20956 -23.18902 -21.61341 -20.86423 -20.48344 -18.46849 -18.01905 -17.08106 -16.93674 -16.45832 -16.04658 -15.64764 -15.12310 -14.64854 -14.54919 -13.76848 -13.69556 -13.49644 -13.22598 -12.62071 -12.52272 -12.31808 -12.28630 -12.10759 -12.05100 -11.77597 -11.66334 -11.61818 -11.23840 -11.06182 -10.87173 -10.81532 -10.63476 -10.62398 -10.26487 -9.89404 -9.63228 -9.28223 -8.46862 -6.11535 -4.15476 0.81935 1.39985 1.75722 2.01973 2.46847 3.26655 3.31720 3.33501 3.48204 3.73850 4.04707 4.24644 4.32485 4.39934 4.51502 4.62632 4.76540 5.10785 5.21339 5.24388 5.30982 5.34754 5.36213 5.38767 5.41950 5.46407 5.72931 5.76740 5.79717 5.87090 6.12609 6.36185 6.58210 6.81799 7.38953 7.48923 7.58563 7.85502 8.25417 8.35534 8.90389 9.49436 10.99778 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.032533 B = 0.002755 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.450619 B =10162.245656 C =10429.967529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.014 4.014 3 C -0.143 4.143 4 C 0.206 3.794 5 N -0.298 5.298 6 N -0.069 5.069 7 N -0.083 5.083 8 N -0.302 5.302 9 C 0.121 3.879 10 C 0.444 3.556 11 O -0.490 6.490 12 O -0.348 6.348 13 C 0.069 3.931 14 C -0.109 4.109 15 C 0.025 3.975 16 C -0.525 4.525 17 H 0.058 0.942 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.230 20.476 -5.904 22.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.036 4.036 3 C -0.202 4.202 4 C -0.072 4.072 5 N -0.146 5.146 6 N -0.063 5.063 7 N -0.069 5.069 8 N -0.104 5.104 9 C -0.003 4.003 10 C 0.284 3.716 11 O -0.377 6.377 12 O -0.263 6.263 13 C -0.003 4.003 14 C -0.146 4.146 15 C -0.013 4.013 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.724 3.276 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.174 0.826 32 H 0.170 0.830 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.855 20.085 -7.495 22.507 hybrid contribution 0.123 -0.932 1.695 1.938 sum 6.979 19.153 -5.800 21.194 Atomic orbital electron populations 1.21848 0.91529 1.03398 1.03598 1.19861 0.98059 0.96204 0.89436 1.21853 1.01246 0.93228 1.03828 1.26184 0.94171 0.88753 0.98138 1.74977 1.19557 1.21833 0.98269 1.78621 1.06544 0.98800 1.22323 1.78925 1.20211 1.20668 0.87066 1.47953 1.35319 1.20218 1.06903 1.21472 0.97885 0.94392 0.86541 1.23107 0.86430 0.82507 0.79597 1.90789 1.26154 1.68798 1.51917 1.86469 1.50592 1.44042 1.45202 1.23698 0.89538 0.87042 1.00040 1.21807 1.01726 0.97547 0.93549 1.19051 0.93113 0.92066 0.97023 1.21104 1.05174 1.16075 1.13970 0.92422 1.25030 0.94887 0.97230 0.97244 1.69950 1.11535 1.30703 1.41057 0.86592 0.78463 0.79766 0.82811 1.20139 1.21209 1.20132 0.91858 0.90954 0.90638 0.88943 0.90608 0.92292 0.90898 0.82596 0.82997 0.91087 0.91077 0.91901 0.91918 0.96198 0.96196 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.18 37.16 0.34 -0.78 16 2 C -0.01 -0.10 3.26 -91.77 -0.30 -0.40 16 3 C -0.14 -0.77 9.18 37.16 0.34 -0.43 16 4 C 0.21 2.23 6.64 -155.42 -1.03 1.20 16 5 N -0.30 -4.08 12.36 32.70 0.40 -3.67 16 6 N -0.07 -1.05 13.43 60.35 0.81 -0.24 16 7 N -0.08 -1.17 13.29 60.35 0.80 -0.37 16 8 N -0.30 -3.35 2.83 -59.44 -0.17 -3.51 16 9 C 0.12 0.90 6.68 -5.20 -0.03 0.87 16 10 C 0.44 5.41 8.03 36.01 0.29 5.70 16 11 O -0.49 -7.96 16.18 -18.76 -0.30 -8.27 16 12 O -0.35 -4.64 10.22 -39.24 -0.40 -5.04 16 13 C 0.07 1.13 5.47 37.16 0.20 1.33 16 14 C -0.11 -2.05 5.53 -26.73 -0.15 -2.19 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 16 C -0.53 -14.22 9.11 -34.44 -0.31 -14.54 16 17 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 20 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.47 6.85 -51.93 -0.36 0.11 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.16 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.15 0.46 7.13 -51.93 -0.37 0.09 16 33 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 34 H 0.07 1.20 8.13 -51.92 -0.42 0.78 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 341.81 15.07 5.15 5.15 Total: -1.00 -34.33 341.81 -4.64 -38.97 By element: Atomic # 1 Polarization: -0.48 SS G_CDS: -5.76 Total: -6.24 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -0.89 Total: -7.27 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 2.58 Total: -33.22 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.70 Total: -13.31 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.33 -4.64 -38.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747028727.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.789 kcal (2) G-P(sol) polarization free energy of solvation -34.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds