Wall clock time and date at job start Tue Mar 31 2020 06:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47068 * 2 1 4 4 C 1.33637 * 126.03914 * 90.02234 * 3 2 1 5 5 N 1.31779 * 114.49999 * 180.02562 * 4 3 2 6 6 C 1.29022 * 117.12907 * 0.02562 * 5 4 3 7 7 C 1.50697 * 124.92117 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47039 * 99.40697 * 7 6 5 9 9 C 1.46896 * 111.00349 * 163.64456 * 8 7 6 10 10 C 1.50696 * 109.47790 * 195.80279 * 9 8 7 11 11 H 1.08007 * 119.99680 * 5.01507 * 10 9 8 12 12 C 1.37876 * 120.00271 * 185.01792 * 10 9 8 13 13 N 1.31512 * 120.00211 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99736 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47189 * 60.00225 * 14 12 10 16 16 H 1.48503 * 109.47060 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47646 * 299.99530 * 14 12 10 18 18 C 1.46903 * 111.00344 * 287.60290 * 8 7 6 19 19 C 1.52998 * 109.47355 * 85.56594 * 18 8 7 20 20 C 1.52999 * 109.47178 * 65.85065 * 19 18 8 21 21 C 1.52999 * 109.46997 * 185.85341 * 19 18 8 22 22 S 1.70983 * 110.16306 * 359.72269 * 6 5 4 23 23 H 1.08994 * 109.47054 * 299.99789 * 1 2 3 24 24 H 1.09005 * 109.46884 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47107 * 60.00363 * 1 2 3 26 26 H 1.08994 * 109.47308 * 120.00063 * 2 1 3 27 27 H 1.09004 * 109.46977 * 240.00295 * 2 1 3 28 28 H 1.08003 * 122.74451 * 0.02562 * 4 3 2 29 29 H 1.08996 * 109.47231 * 219.40797 * 7 6 5 30 30 H 1.08998 * 109.47093 * 339.41348 * 7 6 5 31 31 H 1.09000 * 109.47160 * 315.80505 * 9 8 7 32 32 H 1.09004 * 109.46744 * 75.80002 * 9 8 7 33 33 H 0.96992 * 120.00151 * 180.02562 * 13 12 10 34 34 H 1.08999 * 109.47197 * 205.57060 * 18 8 7 35 35 H 1.09005 * 109.46574 * 325.56377 * 18 8 7 36 36 H 1.09004 * 109.46637 * 305.85172 * 19 18 8 37 37 H 1.08998 * 109.46851 * 64.43162 * 20 19 18 38 38 H 1.08997 * 109.46917 * 184.42976 * 20 19 18 39 39 H 1.08996 * 109.47372 * 304.43205 * 20 19 18 40 40 H 1.09002 * 109.47193 * 60.00029 * 21 19 18 41 41 H 1.09002 * 109.46855 * 180.02562 * 21 19 18 42 42 H 1.08996 * 109.47053 * 299.99632 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2948 2.1620 1.0806 5 7 2.7246 3.3795 0.8170 6 6 2.8388 3.7069 -0.4257 7 6 3.3114 5.0481 -0.9246 8 7 4.7284 4.9587 -1.3016 9 6 5.1234 6.0993 -2.1388 10 6 6.4329 5.7937 -2.8190 11 1 6.8823 4.8174 -2.7115 12 6 7.0573 6.7602 -3.5786 13 7 6.5099 7.9487 -3.7099 14 14 8.6809 6.3813 -4.4212 15 1 8.4972 5.2481 -5.3631 16 1 9.1405 7.5780 -5.1710 17 1 9.6955 6.0168 -3.4000 18 6 5.5844 4.8574 -0.1121 19 6 5.6881 3.3929 0.3184 20 6 6.4272 2.5960 -0.7584 21 6 6.4573 3.3025 1.6379 22 16 2.3829 2.3963 -1.4248 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 2.1653 1.7932 2.0874 29 1 2.7220 5.3409 -1.7935 30 1 3.1913 5.7917 -0.1367 31 1 4.3563 6.2802 -2.8918 32 1 5.2363 6.9860 -1.5149 33 1 6.9490 8.6285 -4.2445 34 1 6.5783 5.2387 -0.3461 35 1 5.1515 5.4445 0.6980 36 1 4.6875 2.9818 0.4522 37 1 7.4530 2.9559 -0.8369 38 1 6.4323 1.5397 -0.4894 39 1 5.9227 2.7245 -1.7161 40 1 5.9307 3.8702 2.4051 41 1 6.5316 2.2591 1.9443 42 1 7.4578 3.7136 1.5041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753539747.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:27 Heat of formation + Delta-G solvation = 32.304269 kcal Electronic energy + Delta-G solvation = -20676.745902 eV Core-core repulsion = 17783.232381 eV Total energy + Delta-G solvation = -2893.513520 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.72862 -37.29451 -34.38967 -33.97123 -32.48940 -29.81328 -27.41653 -26.55649 -26.51487 -24.76279 -23.28432 -22.47621 -20.77602 -19.41084 -18.99048 -17.77565 -16.31379 -15.45595 -15.24623 -14.58090 -14.45276 -14.31059 -13.91981 -13.83761 -13.54206 -13.35104 -12.84390 -12.45723 -12.35386 -12.15796 -11.75110 -11.69034 -11.62250 -11.45962 -11.30115 -10.94764 -10.81124 -10.77174 -10.67294 -10.31003 -10.09974 -9.84708 -9.73855 -9.37202 -9.23873 -8.88641 -8.47586 -8.41587 -7.33723 -6.02602 -4.03635 0.95149 1.60609 2.08341 3.05353 3.34040 3.38079 3.41267 4.35908 4.46787 4.76101 4.89225 5.01763 5.12504 5.31654 5.35489 5.47650 5.52312 5.57079 5.59725 5.66771 5.78806 5.84121 5.95940 6.00896 6.03482 6.07911 6.19383 6.38106 6.40574 6.42613 6.53306 6.61779 6.71692 7.02528 7.05905 7.22695 7.33354 7.81887 7.98324 8.06592 8.16580 8.49955 9.04974 9.60637 11.07905 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022927 B = 0.004718 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.964727 B = 5933.026249 C = 6255.407288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C -0.244 4.244 4 C 0.036 3.964 5 N -0.477 5.477 6 C 0.081 3.919 7 C 0.121 3.879 8 N -0.528 5.528 9 C 0.194 3.806 10 C -0.503 4.503 11 H 0.066 0.934 12 C 0.056 3.944 13 N -0.900 5.900 14 Si 0.896 3.104 15 H -0.276 1.276 16 H -0.289 1.289 17 H -0.277 1.277 18 C 0.071 3.929 19 C -0.100 4.100 20 C -0.134 4.134 21 C -0.140 4.140 22 S 0.143 5.857 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.165 0.835 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.027 0.973 32 H -0.002 1.002 33 H 0.261 0.739 34 H 0.081 0.919 35 H 0.025 0.975 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.047 0.953 41 H 0.044 0.956 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.441 -13.480 7.872 18.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 C -0.365 4.365 4 C -0.115 4.115 5 N -0.192 5.192 6 C -0.196 4.196 7 C -0.011 4.011 8 N -0.253 5.253 9 C 0.070 3.930 10 C -0.542 4.542 11 H 0.084 0.916 12 C -0.145 4.145 13 N -0.539 5.539 14 Si 0.724 3.276 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.058 4.058 19 C -0.119 4.119 20 C -0.191 4.191 21 C -0.198 4.198 22 S 0.399 5.601 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.182 0.818 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.016 0.984 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.043 0.957 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.242 -13.427 6.794 17.659 hybrid contribution 0.753 0.364 0.927 1.248 sum -8.489 -13.062 7.721 17.387 Atomic orbital electron populations 1.21794 0.94582 1.01716 1.02398 1.19903 0.95808 0.89350 1.03071 1.25952 1.12029 1.02580 0.95977 1.21551 1.01326 0.89074 0.99591 1.66344 1.16417 1.17497 1.18915 1.27090 1.00383 1.01356 0.90766 1.20727 0.92994 0.87842 0.99546 1.62046 0.98395 1.46787 1.18036 1.19787 0.96606 0.85619 0.91013 1.21109 1.05107 0.98752 1.29211 0.91599 1.24965 0.97831 0.94942 0.96756 1.69941 1.39433 1.03937 1.40608 0.86591 0.83787 0.77578 0.79650 1.20177 1.21437 1.20285 1.22080 0.98522 0.94860 0.90317 1.21341 0.99972 0.96713 0.93923 1.21695 1.00235 0.97093 1.00087 1.21757 1.00102 1.00360 0.97591 1.84057 1.58995 1.06322 1.10753 0.92435 0.92212 0.92503 0.90219 0.90850 0.81774 0.89240 0.92449 0.95483 0.98362 0.92893 0.90104 0.95687 0.90669 0.93447 0.95035 0.91073 0.93351 0.93723 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.89 37.16 0.37 -0.80 16 2 C -0.04 -0.38 6.47 -27.88 -0.18 -0.56 16 3 C -0.24 -3.02 5.85 -35.92 -0.21 -3.23 16 4 C 0.04 0.49 10.95 -19.19 -0.21 0.28 16 5 N -0.48 -7.68 8.98 -11.86 -0.11 -7.78 16 6 C 0.08 1.34 4.87 -13.46 -0.07 1.27 16 7 C 0.12 2.18 5.53 -4.98 -0.03 2.15 16 8 N -0.53 -10.96 3.77 -237.52 -0.89 -11.86 16 9 C 0.19 4.85 4.68 -4.98 -0.02 4.83 16 10 C -0.50 -13.65 8.30 -34.44 -0.29 -13.94 16 11 H 0.07 1.78 7.81 -52.48 -0.41 1.37 16 12 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 14 Si 0.90 21.45 29.54 -169.99 -5.02 16.42 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 C 0.07 1.41 4.20 -3.82 -0.02 1.39 16 19 C -0.10 -1.76 2.86 -90.62 -0.26 -2.02 16 20 C -0.13 -2.38 9.14 37.16 0.34 -2.04 16 21 C -0.14 -2.17 9.19 37.16 0.34 -1.83 16 22 S 0.14 2.05 23.18 -107.50 -2.49 -0.44 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.17 1.82 8.06 -52.48 -0.42 1.40 16 29 H 0.09 1.54 7.72 -51.93 -0.40 1.14 16 30 H 0.06 1.04 7.73 -51.93 -0.40 0.64 16 31 H 0.03 0.71 7.72 -51.93 -0.40 0.31 16 32 H 0.00 -0.04 8.05 -51.93 -0.42 -0.46 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.08 1.79 7.05 -51.93 -0.37 1.43 16 35 H 0.02 0.50 7.59 -51.93 -0.39 0.10 16 36 H 0.08 1.33 3.81 -51.93 -0.20 1.13 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 1.40 7.66 -51.93 -0.40 1.00 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 350.41 15.07 5.28 5.28 Total: -1.00 -28.82 350.41 -10.00 -38.81 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -7.17 Total: -1.92 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -0.33 Total: -13.04 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.26 Total: -45.12 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.49 Total: -0.44 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.82 -10.00 -38.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753539747.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.116 kcal (2) G-P(sol) polarization free energy of solvation -28.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds