Wall clock time and date at job start Tue Mar 31 2020 06:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47068 * 2 1 4 4 C 1.33637 * 126.03914 * 90.02234 * 3 2 1 5 5 N 1.31779 * 114.49999 * 180.02562 * 4 3 2 6 6 C 1.29022 * 117.12907 * 0.02562 * 5 4 3 7 7 C 1.50697 * 124.92117 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47039 * 99.40697 * 7 6 5 9 9 C 1.46896 * 111.00349 * 163.64456 * 8 7 6 10 10 C 1.50696 * 109.47790 * 195.80279 * 9 8 7 11 11 H 1.08007 * 119.99680 * 5.01507 * 10 9 8 12 12 C 1.37876 * 120.00271 * 185.01792 * 10 9 8 13 13 N 1.31512 * 120.00211 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99736 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47189 * 60.00225 * 14 12 10 16 16 H 1.48503 * 109.47060 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47646 * 299.99530 * 14 12 10 18 18 C 1.46903 * 111.00344 * 287.60290 * 8 7 6 19 19 C 1.52998 * 109.47355 * 85.56594 * 18 8 7 20 20 C 1.52999 * 109.47178 * 65.85065 * 19 18 8 21 21 C 1.52999 * 109.46997 * 185.85341 * 19 18 8 22 22 S 1.70983 * 110.16306 * 359.72269 * 6 5 4 23 23 H 1.08994 * 109.47054 * 299.99789 * 1 2 3 24 24 H 1.09005 * 109.46884 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47107 * 60.00363 * 1 2 3 26 26 H 1.08994 * 109.47308 * 120.00063 * 2 1 3 27 27 H 1.09004 * 109.46977 * 240.00295 * 2 1 3 28 28 H 1.08003 * 122.74451 * 0.02562 * 4 3 2 29 29 H 1.08996 * 109.47231 * 219.40797 * 7 6 5 30 30 H 1.08998 * 109.47093 * 339.41348 * 7 6 5 31 31 H 1.09000 * 109.47160 * 315.80505 * 9 8 7 32 32 H 1.09004 * 109.46744 * 75.80002 * 9 8 7 33 33 H 0.96992 * 120.00151 * 180.02562 * 13 12 10 34 34 H 1.08999 * 109.47197 * 205.57060 * 18 8 7 35 35 H 1.09005 * 109.46574 * 325.56377 * 18 8 7 36 36 H 1.09004 * 109.46637 * 305.85172 * 19 18 8 37 37 H 1.08998 * 109.46851 * 64.43162 * 20 19 18 38 38 H 1.08997 * 109.46917 * 184.42976 * 20 19 18 39 39 H 1.08996 * 109.47372 * 304.43205 * 20 19 18 40 40 H 1.09002 * 109.47193 * 60.00029 * 21 19 18 41 41 H 1.09002 * 109.46855 * 180.02562 * 21 19 18 42 42 H 1.08996 * 109.47053 * 299.99632 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2948 2.1620 1.0806 5 7 2.7246 3.3795 0.8170 6 6 2.8388 3.7069 -0.4257 7 6 3.3114 5.0481 -0.9246 8 7 4.7284 4.9587 -1.3016 9 6 5.1234 6.0993 -2.1388 10 6 6.4329 5.7937 -2.8190 11 1 6.8823 4.8174 -2.7115 12 6 7.0573 6.7602 -3.5786 13 7 6.5099 7.9487 -3.7099 14 14 8.6809 6.3813 -4.4212 15 1 8.4972 5.2481 -5.3631 16 1 9.1405 7.5780 -5.1710 17 1 9.6955 6.0168 -3.4000 18 6 5.5844 4.8574 -0.1121 19 6 5.6881 3.3929 0.3184 20 6 6.4272 2.5960 -0.7584 21 6 6.4573 3.3025 1.6379 22 16 2.3829 2.3963 -1.4248 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 2.1653 1.7932 2.0874 29 1 2.7220 5.3409 -1.7935 30 1 3.1913 5.7917 -0.1367 31 1 4.3563 6.2802 -2.8918 32 1 5.2363 6.9860 -1.5149 33 1 6.9490 8.6285 -4.2445 34 1 6.5783 5.2387 -0.3461 35 1 5.1515 5.4445 0.6980 36 1 4.6875 2.9818 0.4522 37 1 7.4530 2.9559 -0.8369 38 1 6.4323 1.5397 -0.4894 39 1 5.9227 2.7245 -1.7161 40 1 5.9307 3.8702 2.4051 41 1 6.5316 2.2591 1.9443 42 1 7.4578 3.7136 1.5041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753539747.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:26 Heat of formation + Delta-G solvation = 16.691152 kcal Electronic energy + Delta-G solvation = -20677.422937 eV Core-core repulsion = 17783.232381 eV Total energy + Delta-G solvation = -2894.190556 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.92109 -38.84637 -35.61899 -35.26733 -34.40436 -31.17320 -28.98302 -27.99338 -27.89981 -26.26114 -24.70983 -23.47030 -22.50597 -20.88942 -20.12820 -18.94362 -18.36254 -17.04292 -16.44887 -16.29001 -15.96898 -15.37966 -15.12675 -15.04102 -14.85362 -14.69827 -14.25324 -13.96114 -13.79474 -13.42595 -13.30614 -13.03300 -12.84793 -12.73096 -12.56276 -12.50294 -12.48458 -12.29693 -11.96958 -11.73759 -11.64238 -11.47187 -11.41512 -11.16873 -10.57784 -10.48788 -10.03790 -9.58537 -9.09073 -8.16742 -6.25386 -0.18328 0.49307 0.96050 1.42362 1.44532 1.52221 1.92029 2.42322 3.09525 3.16054 3.49769 3.94566 4.01631 4.09963 4.20009 4.21286 4.39060 4.43225 4.45827 4.55924 4.64590 4.66788 4.83565 4.85302 4.89912 4.96497 5.06942 5.07608 5.11792 5.18874 5.20588 5.24344 5.32209 5.33744 5.41223 5.56042 5.65196 5.71921 6.07493 6.30288 6.55867 6.87369 6.90749 7.43553 8.93630 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022927 B = 0.004718 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.964727 B = 5933.026249 C = 6255.407288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 C -0.218 4.218 4 C 0.018 3.982 5 N -0.487 5.487 6 C 0.052 3.948 7 C 0.123 3.877 8 N -0.525 5.525 9 C 0.209 3.791 10 C -0.513 4.513 11 H 0.064 0.936 12 C 0.005 3.995 13 N -0.934 5.934 14 Si 0.962 3.038 15 H -0.268 1.268 16 H -0.285 1.285 17 H -0.270 1.270 18 C 0.077 3.923 19 C -0.095 4.095 20 C -0.127 4.127 21 C -0.135 4.135 22 S 0.144 5.856 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.047 0.953 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.192 0.808 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.009 0.991 32 H -0.032 1.032 33 H 0.263 0.737 34 H 0.053 0.947 35 H 0.020 0.980 36 H 0.080 0.920 37 H 0.038 0.962 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.065 0.935 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.503 -16.384 8.696 20.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 C -0.339 4.339 4 C -0.132 4.132 5 N -0.203 5.203 6 C -0.224 4.224 7 C -0.008 4.008 8 N -0.249 5.249 9 C 0.083 3.917 10 C -0.551 4.551 11 H 0.082 0.918 12 C -0.193 4.193 13 N -0.575 5.575 14 Si 0.787 3.213 15 H -0.193 1.193 16 H -0.210 1.210 17 H -0.195 1.195 18 C -0.051 4.051 19 C -0.114 4.114 20 C -0.185 4.185 21 C -0.193 4.193 22 S 0.399 5.601 23 H 0.075 0.925 24 H 0.099 0.901 25 H 0.066 0.934 26 H 0.120 0.880 27 H 0.099 0.901 28 H 0.208 0.792 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.027 0.973 32 H -0.014 1.014 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.038 0.962 36 H 0.098 0.902 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.313 -16.344 7.635 20.302 hybrid contribution 0.660 1.187 0.722 1.539 sum -8.652 -15.157 8.358 19.350 Atomic orbital electron populations 1.21781 0.93516 1.02985 1.01960 1.20113 0.96583 0.87128 1.04488 1.26415 1.09575 1.03550 0.94404 1.21942 1.01867 0.88318 1.01089 1.66301 1.16174 1.18960 1.18859 1.26532 1.03058 1.01271 0.91562 1.20617 0.91205 0.89539 0.99441 1.61990 1.00211 1.44352 1.18393 1.19444 0.95592 0.85986 0.90659 1.21376 1.05849 0.98674 1.29217 0.91751 1.25804 1.01346 0.94702 0.97419 1.70066 1.41067 1.04902 1.41488 0.85551 0.79512 0.77583 0.78688 1.19314 1.21027 1.19541 1.22027 0.96657 0.96812 0.89633 1.21310 1.00679 0.94446 0.94990 1.21615 0.99324 0.98532 0.99006 1.21707 0.99596 1.01767 0.96207 1.84027 1.58620 1.05924 1.11563 0.92452 0.90143 0.93418 0.88024 0.90147 0.79169 0.89198 0.93205 0.97273 1.01445 0.92806 0.92876 0.96178 0.90204 0.94248 0.92648 0.93321 0.93165 0.91630 0.93272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.89 71.98 0.71 -1.12 16 2 C -0.04 -0.63 6.47 29.85 0.19 -0.44 16 3 C -0.22 -4.81 5.85 24.64 0.14 -4.67 16 4 C 0.02 0.45 10.95 83.66 0.92 1.36 16 5 N -0.49 -15.15 8.98 -191.45 -1.72 -16.87 16 6 C 0.05 1.71 4.87 88.52 0.43 2.14 16 7 C 0.12 4.63 5.53 85.56 0.47 5.10 16 8 N -0.52 -22.65 3.77 -905.39 -3.41 -26.06 16 9 C 0.21 10.98 4.68 85.56 0.40 11.38 16 10 C -0.51 -28.64 8.30 25.60 0.21 -28.42 16 11 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 12 C 0.01 0.30 5.46 84.65 0.46 0.76 16 13 N -0.93 -55.88 13.29 21.45 0.28 -55.59 16 14 Si 0.96 44.32 29.54 68.60 2.03 46.34 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 C 0.08 3.15 4.20 86.30 0.36 3.51 16 19 C -0.10 -3.27 2.86 -10.79 -0.03 -3.30 16 20 C -0.13 -4.40 9.14 71.98 0.66 -3.74 16 21 C -0.13 -3.94 9.19 71.98 0.66 -3.28 16 22 S 0.14 3.96 23.18 -56.49 -1.31 2.65 16 23 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 26 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.19 3.55 8.06 -2.91 -0.02 3.53 16 29 H 0.09 3.27 7.72 -2.39 -0.02 3.25 16 30 H 0.05 1.91 7.73 -2.39 -0.02 1.89 16 31 H 0.01 0.51 7.72 -2.39 -0.02 0.49 16 32 H -0.03 -1.86 8.05 -2.38 -0.02 -1.88 16 33 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 34 H 0.05 2.45 7.05 -2.39 -0.02 2.43 16 35 H 0.02 0.83 7.59 -2.38 -0.02 0.81 16 36 H 0.08 2.72 3.81 -2.38 -0.01 2.71 16 37 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.05 1.89 7.66 -2.39 -0.02 1.87 16 40 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -62.95 350.41 2.44 -60.51 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.97 Total: 9.73 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 5.60 Total: -20.71 kcal Atomic # 7 Polarization: -93.68 SS G_CDS: -4.84 Total: -98.52 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.31 Total: 2.65 kcal Total: -62.95 2.44 -60.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753539747.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.202 kcal (2) G-P(sol) polarization free energy of solvation -62.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds