Wall clock time and date at job start Tue Mar 31 2020 06:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29028 * 124.91910 * 2 1 4 4 C 1.31785 * 117.12558 * 179.97438 * 3 2 1 5 5 C 1.50702 * 122.74834 * 179.97438 * 4 3 2 6 6 C 1.53008 * 109.46885 * 305.02971 * 5 4 3 7 7 N 1.46902 * 109.46497 * 179.97438 * 6 5 4 8 8 C 1.46900 * 110.99704 * 189.99617 * 7 6 5 9 9 C 1.50697 * 109.47163 * 155.66964 * 8 7 6 10 10 H 1.08005 * 119.99984 * 2.96415 * 9 8 7 11 11 C 1.37879 * 120.00208 * 182.95700 * 9 8 7 12 12 N 1.31514 * 119.99955 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99713 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47097 * 90.00316 * 13 11 9 15 15 H 1.48502 * 109.46917 * 209.99779 * 13 11 9 16 16 H 1.48493 * 109.47452 * 330.00094 * 13 11 9 17 17 C 1.46905 * 111.00084 * 66.04820 * 7 6 5 18 18 C 1.52999 * 109.46776 * 197.40929 * 17 7 6 19 19 C 1.52997 * 109.47534 * 60.95068 * 18 17 7 20 20 C 1.53005 * 109.46967 * 180.94965 * 18 17 7 21 21 C 1.33633 * 114.49935 * 0.23791 * 4 3 2 22 22 S 1.70980 * 124.91518 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.46929 * 89.99443 * 1 2 3 24 24 H 1.08997 * 109.47062 * 209.99877 * 1 2 3 25 25 H 1.08999 * 109.46895 * 329.99919 * 1 2 3 26 26 H 1.08990 * 109.47118 * 185.02984 * 5 4 3 27 27 H 1.08997 * 109.46921 * 65.02301 * 5 4 3 28 28 H 1.08997 * 109.46794 * 299.99408 * 6 5 4 29 29 H 1.08990 * 109.47231 * 60.00082 * 6 5 4 30 30 H 1.08998 * 109.47167 * 275.67241 * 8 7 6 31 31 H 1.09003 * 109.47043 * 35.67018 * 8 7 6 32 32 H 0.97000 * 119.99783 * 179.97438 * 12 11 9 33 33 H 1.09003 * 109.46646 * 317.40415 * 17 7 6 34 34 H 1.09000 * 109.47387 * 77.40435 * 17 7 6 35 35 H 1.08997 * 109.47331 * 300.94214 * 18 17 7 36 36 H 1.09002 * 109.46845 * 299.99497 * 19 18 17 37 37 H 1.08997 * 109.47509 * 59.99255 * 19 18 17 38 38 H 1.08995 * 109.47333 * 180.02562 * 19 18 17 39 39 H 1.08999 * 109.46995 * 59.99186 * 20 18 17 40 40 H 1.08995 * 109.47002 * 179.97438 * 20 18 17 41 41 H 1.09008 * 109.46905 * 299.99843 * 20 18 17 42 42 H 1.08007 * 126.03635 * 179.76861 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5513 0.8793 0.0005 5 6 4.5308 2.0245 0.0000 6 6 4.2334 2.9495 -1.1820 7 7 5.1880 4.0661 -1.1820 8 6 4.7931 5.0961 -2.1522 9 6 5.3779 6.4230 -1.7421 10 1 6.0216 6.4853 -0.8770 11 6 5.0914 7.5576 -2.4713 12 7 5.6022 8.7155 -2.1136 13 14 3.9777 7.4500 -3.9671 14 1 2.5681 7.6623 -3.5511 15 1 4.3663 8.4936 -4.9496 16 1 4.1134 6.1088 -4.5899 17 6 6.5533 3.5916 -1.4445 18 6 7.5569 4.6646 -1.0176 19 6 7.4105 4.9325 0.4816 20 6 8.9779 4.1802 -1.3127 21 6 3.9354 -0.4006 -0.0041 22 16 2.4856 -1.4020 -0.0006 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 5.5449 1.6352 -0.0895 27 1 4.4369 2.5833 0.9311 28 1 4.3273 2.3907 -2.1131 29 1 3.2194 3.3388 -1.0925 30 1 5.1641 4.8254 -3.1407 31 1 3.7060 5.1712 -2.1802 32 1 5.4009 9.5136 -2.6268 33 1 6.7354 2.6780 -0.8785 34 1 6.6691 3.3886 -2.5091 35 1 7.3640 5.5834 -1.5714 36 1 6.3982 5.2777 0.6919 37 1 7.6034 4.0137 1.0354 38 1 8.1252 5.6972 0.7856 39 1 9.0821 3.9893 -2.3808 40 1 9.6928 4.9448 -1.0090 41 1 9.1708 3.2613 -0.7589 42 1 4.9546 -0.7581 -0.0080 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767405706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:03 Heat of formation + Delta-G solvation = 36.899381 kcal Electronic energy + Delta-G solvation = -20252.949308 eV Core-core repulsion = 17359.635047 eV Total energy + Delta-G solvation = -2893.314261 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.99544 -37.67926 -34.19237 -33.05444 -32.31198 -30.10492 -28.29102 -27.30173 -26.38760 -25.15374 -23.24240 -21.65342 -20.45599 -19.73900 -19.04379 -17.50205 -16.67105 -15.58410 -15.25686 -14.94448 -14.54740 -14.26428 -13.96090 -13.63300 -13.43154 -13.02993 -12.81103 -12.73696 -12.56336 -12.33789 -12.19797 -11.84479 -11.57978 -11.53164 -11.16250 -11.11362 -10.81643 -10.45698 -10.27000 -10.15199 -9.92859 -9.86210 -9.66815 -9.50462 -9.47852 -8.95870 -8.70397 -8.45775 -7.28441 -5.98278 -3.93004 0.64293 1.27802 1.64383 2.77563 3.32277 3.39792 3.42524 3.99152 4.47940 4.69629 4.90497 5.13375 5.20106 5.24307 5.25802 5.33775 5.58320 5.60864 5.66033 5.73148 5.78789 5.86755 6.03829 6.05668 6.16728 6.28733 6.33940 6.42774 6.48343 6.52404 6.60219 6.74679 6.82190 6.94365 7.03177 7.32692 7.49983 7.72592 7.74827 7.98843 8.14207 8.74173 9.14549 9.64269 11.13608 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.016800 B = 0.004470 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.268803 B = 6261.961199 C = 7493.355850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.052 3.948 3 N -0.463 5.463 4 C 0.086 3.914 5 C -0.043 4.043 6 C 0.065 3.935 7 N -0.524 5.524 8 C 0.162 3.838 9 C -0.506 4.506 10 H 0.099 0.901 11 C 0.068 3.932 12 N -0.900 5.900 13 Si 0.868 3.132 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.270 1.270 17 C 0.072 3.928 18 C -0.108 4.108 19 C -0.126 4.126 20 C -0.143 4.143 21 C -0.264 4.264 22 S 0.091 5.909 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.017 0.983 29 H 0.078 0.922 30 H -0.011 1.011 31 H 0.019 0.981 32 H 0.262 0.738 33 H 0.053 0.947 34 H 0.020 0.980 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.030 0.970 38 H 0.036 0.964 39 H 0.044 0.956 40 H 0.049 0.951 41 H 0.040 0.960 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.396 -20.118 4.028 20.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.227 4.227 3 N -0.178 5.178 4 C -0.046 4.046 5 C -0.083 4.083 6 C -0.064 4.064 7 N -0.247 5.247 8 C 0.035 3.965 9 C -0.544 4.544 10 H 0.117 0.883 11 C -0.133 4.133 12 N -0.540 5.540 13 Si 0.696 3.304 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.195 1.195 17 C -0.056 4.056 18 C -0.127 4.127 19 C -0.184 4.184 20 C -0.201 4.201 21 C -0.402 4.402 22 S 0.344 5.656 23 H 0.104 0.896 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.035 0.965 29 H 0.096 0.904 30 H 0.007 0.993 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.038 0.962 35 H 0.134 0.866 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -4.871 -20.279 4.438 21.322 hybrid contribution 0.050 0.272 -1.742 1.764 sum -4.820 -20.007 2.696 20.755 Atomic orbital electron populations 1.20447 0.85266 1.04160 1.03910 1.27088 1.01753 0.90725 1.03132 1.66119 1.04740 1.31264 1.15699 1.20462 0.90111 0.94431 0.99580 1.20313 0.94683 0.91940 1.01366 1.21951 0.97880 0.91973 0.94570 1.61952 1.00523 1.09749 1.52500 1.20248 0.95662 0.91580 0.88980 1.21334 1.29631 0.89240 1.14179 0.88295 1.24898 0.95847 0.95427 0.97134 1.69884 1.45129 0.98870 1.40092 0.86977 0.81763 0.77871 0.83832 1.20303 1.21373 1.19515 1.22066 0.89618 0.96665 0.97227 1.21465 0.91748 1.01378 0.98065 1.21615 1.02795 0.98896 0.95068 1.21832 0.97879 1.00052 1.00299 1.26788 1.02784 0.95601 1.15027 1.83823 0.98659 1.13469 1.69619 0.89599 0.90248 0.89111 0.90378 0.89091 0.96510 0.90396 0.99313 0.96274 0.92815 0.92866 0.96220 0.86551 0.90639 0.95111 0.94439 0.93662 0.93142 0.94113 0.80734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.46 36.01 0.38 -0.25 16 2 C 0.05 0.61 7.39 -13.45 -0.10 0.51 16 3 N -0.46 -6.88 10.34 -8.05 -0.08 -6.96 16 4 C 0.09 1.22 6.08 -84.23 -0.51 0.71 16 5 C -0.04 -0.64 5.68 -27.88 -0.16 -0.80 16 6 C 0.07 1.18 4.82 -3.82 -0.02 1.16 16 7 N -0.52 -10.78 3.71 -236.07 -0.87 -11.65 16 8 C 0.16 3.92 3.85 -4.98 -0.02 3.90 16 9 C -0.51 -13.90 7.79 -34.44 -0.27 -14.16 16 10 H 0.10 2.85 4.82 -52.48 -0.25 2.60 16 11 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 12 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 13 Si 0.87 21.67 27.41 -169.99 -4.66 17.01 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.27 -6.59 6.63 56.52 0.37 -6.21 16 17 C 0.07 1.35 4.27 -3.82 -0.02 1.33 16 18 C -0.11 -2.07 2.40 -90.62 -0.22 -2.29 16 19 C -0.13 -2.35 8.40 37.16 0.31 -2.04 16 20 C -0.14 -2.28 9.19 37.16 0.34 -1.94 16 21 C -0.26 -3.09 11.07 29.12 0.32 -2.77 16 22 S 0.09 0.91 23.18 -107.50 -2.49 -1.58 16 23 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 1.05 6.15 -51.93 -0.32 0.73 16 27 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.02 0.30 8.12 -51.93 -0.42 -0.12 16 29 H 0.08 1.51 7.73 -51.93 -0.40 1.11 16 30 H -0.01 -0.27 6.93 -51.93 -0.36 -0.63 16 31 H 0.02 0.48 6.92 -51.93 -0.36 0.12 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.05 0.86 5.91 -51.93 -0.31 0.55 16 34 H 0.02 0.38 7.74 -51.93 -0.40 -0.02 16 35 H 0.12 2.73 5.14 -51.93 -0.27 2.46 16 36 H 0.07 1.59 6.74 -51.93 -0.35 1.24 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 42 H 0.18 1.65 8.06 -52.48 -0.42 1.22 16 LS Contribution 342.16 15.07 5.16 5.16 Total: -1.00 -30.56 342.16 -9.06 -39.63 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.83 Total: -0.35 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -0.05 Total: -14.80 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: -0.18 Total: -45.06 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.66 Total: 17.01 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.49 Total: -1.58 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.56 -9.06 -39.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767405706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.527 kcal (2) G-P(sol) polarization free energy of solvation -30.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds