Wall clock time and date at job start Tue Mar 31 2020 06:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50709 * 109.46758 * 2 1 4 4 N 1.29025 * 124.91335 * 90.02612 * 3 2 1 5 5 C 1.31783 * 117.12519 * 179.97438 * 4 3 2 6 6 C 1.33645 * 114.49668 * 0.02562 * 5 4 3 7 7 C 1.50697 * 126.03722 * 179.73625 * 6 5 4 8 8 N 1.46906 * 109.47110 * 68.46685 * 7 6 5 9 9 C 1.46897 * 110.99957 * 201.52833 * 8 7 6 10 10 C 1.50706 * 109.46775 * 164.12185 * 9 8 7 11 11 H 1.08001 * 119.99756 * 4.95656 * 10 9 8 12 12 C 1.37879 * 119.99884 * 184.95631 * 10 9 8 13 13 N 1.31509 * 119.99849 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00080 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46798 * 89.99846 * 14 12 10 16 16 H 1.48493 * 109.46956 * 210.00139 * 14 12 10 17 17 H 1.48501 * 109.46954 * 330.00412 * 14 12 10 18 18 C 1.46906 * 110.99479 * 77.58058 * 8 7 6 19 19 C 1.53004 * 109.46885 * 281.26206 * 18 8 7 20 20 C 1.53003 * 109.46925 * 177.57070 * 19 18 8 21 21 C 1.52996 * 109.47271 * 297.57378 * 19 18 8 22 22 S 1.70979 * 124.91661 * 270.02919 * 3 2 1 23 23 H 1.09002 * 109.46624 * 299.99039 * 1 2 3 24 24 H 1.08996 * 109.47601 * 59.99628 * 1 2 3 25 25 H 1.09001 * 109.46600 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46706 * 240.00605 * 2 1 3 27 27 H 1.08993 * 109.47678 * 119.99847 * 2 1 3 28 28 H 1.07997 * 122.75107 * 180.02562 * 5 4 3 29 29 H 1.08991 * 109.47610 * 188.47065 * 7 6 5 30 30 H 1.09011 * 109.46928 * 308.47452 * 7 6 5 31 31 H 1.08995 * 109.47402 * 284.12319 * 9 8 7 32 32 H 1.09002 * 109.47089 * 44.13005 * 9 8 7 33 33 H 0.97006 * 120.00202 * 179.97438 * 13 12 10 34 34 H 1.08998 * 109.47036 * 41.25959 * 18 8 7 35 35 H 1.08998 * 109.46680 * 161.26624 * 18 8 7 36 36 H 1.09004 * 109.47079 * 57.57345 * 19 18 8 37 37 H 1.08995 * 109.46907 * 60.00042 * 20 19 18 38 38 H 1.08995 * 109.46768 * 180.02562 * 20 19 18 39 39 H 1.09003 * 109.47006 * 300.00169 * 20 19 18 40 40 H 1.09007 * 109.47235 * 304.90155 * 21 19 18 41 41 H 1.09001 * 109.47146 * 64.89747 * 21 19 18 42 42 H 1.09003 * 109.47024 * 184.90078 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2789 2.1170 1.0580 5 6 2.7145 3.3479 0.8795 6 6 2.8419 3.7104 -0.4006 7 6 3.3108 5.0529 -0.8994 8 7 4.7347 5.2235 -0.5809 9 6 5.1052 6.6450 -0.5708 10 6 6.4315 6.8134 0.1248 11 1 6.9855 5.9448 0.4487 12 6 6.9375 8.0765 0.3477 13 7 8.0951 8.2235 0.9542 14 14 5.9795 9.5789 -0.2132 15 1 5.0708 10.0211 0.8749 16 1 6.9260 10.6744 -0.5437 17 1 5.1802 9.2353 -1.4166 18 6 5.5777 4.4665 -1.5160 19 6 5.5826 2.9894 -1.1168 20 6 6.4111 2.1913 -2.1256 21 6 6.1943 2.8399 0.2775 22 16 2.3578 2.3439 -1.4020 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8935 -0.5138 0.8899 28 1 2.9492 4.0094 1.7002 29 1 3.1707 5.1087 -1.9788 30 1 2.7335 5.8417 -0.4168 31 1 5.1839 7.0073 -1.5957 32 1 4.3422 7.2156 -0.0412 33 1 8.4513 9.1121 1.1107 34 1 5.1816 4.5685 -2.5263 35 1 6.5956 4.8550 -1.4836 36 1 4.5599 2.6122 -1.1073 37 1 7.4337 2.5685 -2.1351 38 1 6.4142 1.1391 -1.8415 39 1 5.9753 2.2979 -3.1190 40 1 7.1844 3.2955 0.2907 41 1 5.5564 3.3358 1.0092 42 1 6.2778 1.7819 0.5261 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768153354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:27 Heat of formation + Delta-G solvation = 34.519708 kcal Electronic energy + Delta-G solvation = -20708.778058 eV Core-core repulsion = 17815.360607 eV Total energy + Delta-G solvation = -2893.417452 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.67612 -37.63780 -34.26449 -33.96130 -32.48869 -30.47142 -27.69679 -26.65145 -26.36832 -25.00463 -23.41115 -22.42246 -20.66038 -19.50633 -18.99359 -17.88907 -16.78048 -15.58743 -15.18252 -14.75383 -14.49628 -14.27476 -14.19092 -13.73863 -13.65061 -13.40092 -12.94426 -12.54847 -12.50085 -12.28166 -12.06286 -11.80671 -11.73556 -11.45868 -11.30947 -11.18190 -11.03282 -10.81122 -10.56954 -10.40417 -10.34398 -9.98233 -9.91899 -9.47240 -9.32916 -8.62895 -8.58837 -8.51211 -7.47269 -6.06373 -4.03568 0.89149 1.46402 1.89668 3.07080 3.26197 3.34268 3.34800 4.19010 4.39810 4.71451 4.84801 5.03984 5.07666 5.20794 5.26344 5.38100 5.41922 5.51075 5.57554 5.60009 5.71976 5.75781 5.83594 5.94490 5.96077 6.07547 6.12667 6.21191 6.35419 6.43263 6.46571 6.49569 6.62135 6.73985 6.89752 6.94553 7.07542 7.55602 7.84477 7.93839 7.96529 8.62840 9.04344 9.54988 11.06700 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.024478 B = 0.004767 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.601831 B = 5872.460321 C = 6332.378551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.044 4.044 3 C 0.037 3.963 4 N -0.467 5.467 5 C 0.050 3.950 6 C -0.183 4.183 7 C 0.123 3.877 8 N -0.516 5.516 9 C 0.164 3.836 10 C -0.506 4.506 11 H 0.083 0.917 12 C 0.069 3.931 13 N -0.899 5.899 14 Si 0.873 3.127 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.269 1.269 18 C 0.067 3.933 19 C -0.105 4.105 20 C -0.143 4.143 21 C -0.128 4.128 22 S 0.094 5.906 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.178 0.822 29 H 0.038 0.962 30 H 0.089 0.911 31 H -0.011 1.011 32 H 0.025 0.975 33 H 0.263 0.737 34 H 0.019 0.981 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.066 0.934 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.031 -14.404 -5.934 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.241 4.241 4 N -0.181 5.181 5 C -0.100 4.100 6 C -0.304 4.304 7 C -0.008 4.008 8 N -0.239 5.239 9 C 0.038 3.962 10 C -0.544 4.544 11 H 0.101 0.899 12 C -0.132 4.132 13 N -0.538 5.538 14 Si 0.700 3.300 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.194 1.194 18 C -0.061 4.061 19 C -0.125 4.125 20 C -0.201 4.201 21 C -0.185 4.185 22 S 0.348 5.652 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.194 0.806 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.006 0.994 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -12.973 -14.857 -5.935 20.597 hybrid contribution -0.220 1.890 -0.317 1.929 sum -13.192 -12.967 -6.252 19.526 Atomic orbital electron populations 1.21761 0.93847 1.02205 1.02605 1.20153 0.96434 0.88026 1.03934 1.26878 1.04593 1.01615 0.91017 1.66261 1.14193 1.06254 1.31417 1.21631 1.00245 0.91811 0.96308 1.25962 1.07954 1.00619 0.95830 1.20544 0.92246 0.90267 0.97700 1.61879 0.99199 1.12822 1.50038 1.20222 0.97648 0.83036 0.95310 1.21004 1.02197 0.94152 1.37055 0.89908 1.24881 0.94878 0.98609 0.94860 1.69886 1.18529 1.22990 1.42387 0.86906 0.80195 0.83324 0.79553 1.20168 1.21247 1.19394 1.22177 0.99390 0.92933 0.91593 1.21481 1.00102 0.95209 0.95676 1.21794 1.00366 0.99372 0.98595 1.21599 1.01361 0.98903 0.96645 1.83855 1.61016 1.06929 1.13397 0.91992 0.92513 0.91675 0.90017 0.89019 0.80552 0.94385 0.89253 0.99371 0.95731 0.92670 0.96320 0.89404 0.91132 0.92730 0.93327 0.93489 0.92891 0.91524 0.95021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.90 37.16 0.37 -0.79 16 2 C -0.04 -0.42 6.52 -27.88 -0.18 -0.60 16 3 C 0.04 0.48 6.64 -13.45 -0.09 0.39 16 4 N -0.47 -7.12 10.54 -11.86 -0.13 -7.24 16 5 C 0.05 0.78 11.01 -19.18 -0.21 0.57 16 6 C -0.18 -2.77 4.06 -35.92 -0.15 -2.92 16 7 C 0.12 2.03 5.55 -4.97 -0.03 2.00 16 8 N -0.52 -10.18 3.79 -237.51 -0.90 -11.08 16 9 C 0.16 3.79 3.78 -4.97 -0.02 3.77 16 10 C -0.51 -13.90 8.95 -34.44 -0.31 -14.21 16 11 H 0.08 2.49 7.82 -52.49 -0.41 2.08 16 12 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 13 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 14 Si 0.87 21.05 27.37 -169.99 -4.65 16.40 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.27 -6.23 6.69 56.52 0.38 -5.85 16 18 C 0.07 1.25 4.23 -3.82 -0.02 1.24 16 19 C -0.10 -1.72 2.67 -90.62 -0.24 -1.96 16 20 C -0.14 -2.03 9.19 37.16 0.34 -1.69 16 21 C -0.13 -2.28 8.99 37.16 0.33 -1.94 16 22 S 0.09 1.20 21.07 -107.50 -2.27 -1.07 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.18 2.80 8.06 -52.49 -0.42 2.38 16 29 H 0.04 0.59 7.66 -51.93 -0.40 0.20 16 30 H 0.09 1.42 7.61 -51.92 -0.40 1.02 16 31 H -0.01 -0.27 7.45 -51.93 -0.39 -0.65 16 32 H 0.02 0.56 6.82 -51.93 -0.35 0.21 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.02 0.33 7.65 -51.93 -0.40 -0.07 16 35 H 0.09 1.87 6.95 -51.93 -0.36 1.51 16 36 H 0.07 1.11 3.37 -39.68 -0.13 0.98 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.30 7.58 -51.93 -0.39 0.91 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 345.30 15.07 5.20 5.20 Total: -1.00 -29.79 345.30 -9.30 -39.09 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -7.04 Total: -0.63 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -0.29 Total: -14.28 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.25 Total: -44.71 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.65 Total: 16.40 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.27 Total: -1.07 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.79 -9.30 -39.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768153354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.609 kcal (2) G-P(sol) polarization free energy of solvation -29.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds