Wall clock time and date at job start Tue Mar 31 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47378 * 2 1 4 4 C 1.53003 * 109.47112 * 239.99394 * 2 1 3 5 5 N 1.46498 * 109.47057 * 65.00665 * 4 2 1 6 6 C 1.38825 * 120.00418 * 180.02562 * 5 4 2 7 7 C 1.39795 * 119.57897 * 359.72033 * 6 5 4 8 8 C 1.38598 * 119.49072 * 179.97438 * 7 6 5 9 9 C 1.38391 * 118.67940 * 359.97438 * 8 7 6 10 10 C 1.40555 * 119.14850 * 0.02562 * 9 8 7 11 11 C 1.41314 * 119.78538 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99788 * 0.02562 * 11 10 9 13 13 C 1.40032 * 120.00229 * 180.02562 * 11 10 9 14 14 N 1.30742 * 119.99551 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99931 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47117 * 90.00052 * 15 13 11 17 17 H 1.48506 * 109.46681 * 209.99739 * 15 13 11 18 18 H 1.48502 * 109.47122 * 329.99527 * 15 13 11 19 19 N 1.31950 * 119.58628 * 179.45033 * 6 5 4 20 20 C 1.50703 * 109.46736 * 119.99900 * 2 1 3 21 21 C 1.38234 * 120.00097 * 59.72904 * 20 2 1 22 22 C 1.38241 * 119.99849 * 179.81184 * 21 20 2 23 23 C 1.38229 * 119.99832 * 0.39217 * 22 21 20 24 24 C 1.38237 * 120.00159 * 359.85784 * 23 22 21 25 25 C 1.38225 * 119.99879 * 359.95715 * 24 23 22 26 26 H 1.09001 * 109.47711 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47636 * 300.00658 * 1 2 3 28 28 H 1.09004 * 109.47019 * 60.00455 * 1 2 3 29 29 H 1.08993 * 109.47254 * 305.00611 * 4 2 1 30 30 H 1.09001 * 109.47075 * 185.00175 * 4 2 1 31 31 H 0.97005 * 119.99891 * 359.72092 * 5 4 2 32 32 H 1.07997 * 120.25913 * 359.95474 * 7 6 5 33 33 H 1.07998 * 120.66130 * 180.02562 * 8 7 6 34 34 H 1.07994 * 120.42764 * 179.97438 * 9 8 7 35 35 H 0.96999 * 119.99411 * 179.97438 * 14 13 11 36 36 H 1.08003 * 120.00178 * 359.97438 * 21 20 2 37 37 H 1.07997 * 119.99732 * 180.22587 * 22 21 20 38 38 H 1.08006 * 119.99906 * 179.83853 * 23 22 21 39 39 H 1.08000 * 119.99904 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.00113 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 1.6525 0.0352 -2.4424 6 6 2.0059 -0.4273 -3.7027 7 6 2.7366 -1.6130 -3.8228 8 6 3.0880 -2.0733 -5.0820 9 6 2.7009 -1.3392 -6.1895 10 6 1.9673 -0.1548 -6.0034 11 6 1.5656 0.6056 -7.1247 12 1 1.8221 0.2759 -8.1207 13 6 0.8351 1.7866 -6.9445 14 7 0.5243 2.1854 -5.7389 15 14 0.3035 2.7914 -8.4269 16 1 -1.0312 2.3291 -8.8853 17 1 0.2283 4.2261 -8.0511 18 1 1.2908 2.6177 -9.5225 19 7 1.6433 0.2550 -4.7723 20 6 2.0322 -0.7104 1.2305 21 6 1.6936 -2.0322 1.4521 22 6 2.1575 -2.6850 2.5789 23 6 2.9533 -2.0135 3.4881 24 6 3.2877 -0.6902 3.2691 25 6 2.8269 -0.0387 2.1405 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.6053 -1.7198 -1.2951 30 1 3.1263 -0.7996 -1.2055 31 1 1.1452 0.8570 -2.3520 32 1 3.0254 -2.1660 -2.9413 33 1 3.6520 -2.9872 -5.1968 34 1 2.9599 -1.6716 -7.1838 35 1 0.0185 3.0037 -5.6141 36 1 1.0687 -2.5557 0.7436 37 1 1.8960 -3.7187 2.7502 38 1 3.3137 -2.5228 4.3698 39 1 3.9091 -0.1655 3.9797 40 1 3.0885 0.9951 1.9691 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771751037.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:55 Heat of formation + Delta-G solvation = 52.265566 kcal Electronic energy + Delta-G solvation = -20785.565360 eV Core-core repulsion = 17757.473475 eV Total energy + Delta-G solvation = -3028.091885 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.62507 -38.21051 -36.18656 -33.78586 -32.73648 -30.98806 -30.35004 -29.61231 -28.44642 -25.72349 -25.29874 -23.21825 -22.48597 -21.48018 -20.46649 -19.79237 -17.36047 -16.99743 -16.21715 -15.53368 -15.06108 -14.80499 -14.63518 -14.18496 -14.15363 -13.61075 -13.46034 -13.36649 -12.91696 -12.69847 -12.63532 -12.17999 -11.98195 -11.83222 -11.40506 -11.22622 -11.04799 -10.96060 -10.81913 -10.68943 -10.52129 -10.38123 -9.88522 -9.44882 -8.99385 -8.84093 -8.76243 -7.87125 -7.47450 -6.46803 -6.29657 -4.44027 1.28252 1.32875 2.90483 3.12747 3.16158 3.27565 3.33269 3.70188 4.00658 4.19794 4.72157 4.80675 4.87594 4.92363 5.03366 5.10738 5.22680 5.42000 5.44499 5.49071 5.84445 5.88312 5.93563 5.99478 6.04677 6.17744 6.19095 6.20921 6.28675 6.40957 6.43825 6.62275 6.64151 6.89875 6.92753 6.93793 6.98641 7.28456 7.63852 7.85311 7.95988 8.20383 8.40549 8.72724 8.83938 9.16117 10.28147 10.43828 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.027795 B = 0.003440 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.121610 B = 8137.451514 C = 8810.037406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.064 4.064 3 H 0.083 0.917 4 C 0.153 3.847 5 N -0.738 5.738 6 C 0.412 3.588 7 C -0.367 4.367 8 C -0.032 4.032 9 C -0.317 4.317 10 C 0.293 3.707 11 C -0.435 4.435 12 H 0.082 0.918 13 C 0.071 3.929 14 N -0.716 5.716 15 Si 0.905 3.095 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.262 1.262 19 N -0.532 5.532 20 C -0.067 4.067 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.116 4.116 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.395 0.605 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.269 0.731 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.960 -3.427 15.450 15.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 H 0.101 0.899 4 C 0.027 3.973 5 N -0.375 5.375 6 C 0.172 3.828 7 C -0.393 4.393 8 C -0.056 4.056 9 C -0.340 4.340 10 C 0.166 3.834 11 C -0.467 4.467 12 H 0.101 0.899 13 C -0.153 4.153 14 N -0.338 5.338 15 Si 0.729 3.271 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.186 1.186 19 N -0.253 5.253 20 C -0.067 4.067 21 C -0.130 4.130 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.134 4.134 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.230 0.770 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.467 -2.651 15.744 15.973 hybrid contribution 0.147 -0.113 -0.616 0.643 sum 0.613 -2.764 15.128 15.391 Atomic orbital electron populations 1.21835 0.93725 1.02327 1.02053 1.20375 0.96639 0.99605 0.91680 0.89864 1.21050 0.98634 0.94541 0.83110 1.44134 1.63287 1.28322 1.01765 1.18512 0.89196 0.88784 0.86333 1.20614 1.18908 1.03114 0.96631 1.20594 0.95729 0.96573 0.92751 1.21528 1.13749 1.01853 0.96906 1.18196 0.87023 0.88486 0.89740 1.19573 1.29211 1.04762 0.93182 0.89945 1.26045 0.94986 0.97799 0.96513 1.70156 1.23910 1.17971 1.21773 0.86387 0.79750 0.78859 0.82112 1.19536 1.20276 1.18627 1.68214 1.28122 1.32446 0.96563 1.19796 0.97027 0.94235 0.95669 1.21082 1.00029 0.94349 0.97552 1.21139 0.98144 0.99807 0.94671 1.21117 0.99098 0.94937 0.99503 1.21113 1.00148 0.94996 0.97625 1.21105 0.97899 1.00008 0.94390 0.92433 0.92777 0.91480 0.93008 0.93094 0.77009 0.89270 0.89007 0.88758 0.92013 0.85880 0.86203 0.86402 0.86270 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.88 37.16 0.33 -1.41 16 2 C -0.06 -0.82 2.60 -91.77 -0.24 -1.06 16 3 H 0.08 1.05 7.88 -51.93 -0.41 0.65 16 4 C 0.15 2.44 4.02 -4.04 -0.02 2.42 16 5 N -0.74 -14.86 5.45 -60.40 -0.33 -15.19 16 6 C 0.41 10.22 7.65 -155.33 -1.19 9.03 16 7 C -0.37 -8.68 9.34 -38.87 -0.36 -9.04 16 8 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 9 C -0.32 -8.19 9.83 -38.65 -0.38 -8.57 16 10 C 0.29 8.28 6.55 -85.00 -0.56 7.72 16 11 C -0.44 -11.94 9.14 -37.74 -0.34 -12.29 16 12 H 0.08 2.12 7.85 -52.48 -0.41 1.71 16 13 C 0.07 1.85 5.50 -17.34 -0.10 1.75 16 14 N -0.72 -19.16 11.46 55.55 0.64 -18.52 16 15 Si 0.90 18.89 29.56 -169.99 -5.02 13.87 16 16 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 17 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 19 N -0.53 -14.89 7.89 -10.33 -0.08 -14.97 16 20 C -0.07 -0.80 4.78 -104.62 -0.50 -1.30 16 21 C -0.11 -1.28 8.76 -39.58 -0.35 -1.63 16 22 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 23 C -0.13 -1.24 10.05 -39.59 -0.40 -1.63 16 24 C -0.12 -1.20 10.05 -39.59 -0.40 -1.60 16 25 C -0.12 -1.28 9.67 -39.59 -0.38 -1.66 16 26 H 0.06 0.69 7.37 -51.93 -0.38 0.31 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.91 7.18 -51.93 -0.37 0.53 16 29 H 0.05 0.83 7.37 -51.93 -0.38 0.45 16 30 H 0.05 0.85 7.91 -51.93 -0.41 0.44 16 31 H 0.39 7.87 7.77 -40.82 -0.32 7.56 16 32 H 0.09 1.90 6.68 -52.49 -0.35 1.55 16 33 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 35 H 0.27 6.52 8.29 -40.82 -0.34 6.18 16 36 H 0.12 1.34 7.16 -52.48 -0.38 0.96 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.12 1.19 7.95 -52.49 -0.42 0.77 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -30.25 334.51 -10.94 -41.18 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -5.50 Total: 10.64 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -5.68 Total: -22.04 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.23 Total: -48.68 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.25 -10.94 -41.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771751037.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.447 kcal (2) G-P(sol) polarization free energy of solvation -30.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds