Wall clock time and date at job start Tue Mar 31 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 N 1.46499 * 109.46679 * 294.99474 * 4 2 1 6 6 C 1.38830 * 119.99808 * 179.97438 * 5 4 2 7 7 C 1.39798 * 119.58081 * 359.72723 * 6 5 4 8 8 C 1.38599 * 119.48552 * 179.78743 * 7 6 5 9 9 C 1.38389 * 118.68325 * 0.48268 * 8 7 6 10 10 C 1.40559 * 119.14674 * 359.74266 * 9 8 7 11 11 C 1.41318 * 119.78142 * 179.97438 * 10 9 8 12 12 H 1.07993 * 119.99886 * 0.02562 * 11 10 9 13 13 C 1.40026 * 119.99724 * 180.02562 * 11 10 9 14 14 N 1.30749 * 119.99844 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99873 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47457 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47397 * 120.00159 * 15 13 11 18 18 H 1.48500 * 109.47172 * 240.00136 * 15 13 11 19 19 N 1.31953 * 119.58533 * 180.02562 * 6 5 4 20 20 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 21 21 C 1.38238 * 120.00152 * 299.72845 * 20 2 1 22 22 C 1.38237 * 120.00057 * 179.79113 * 21 20 2 23 23 C 1.38230 * 119.99997 * 0.43657 * 22 21 20 24 24 C 1.38237 * 120.00148 * 359.81434 * 23 22 21 25 25 C 1.38236 * 120.00068 * 119.99965 * 20 2 1 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 30 30 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 31 31 H 0.96996 * 120.00184 * 0.02562 * 5 4 2 32 32 H 1.08002 * 120.25865 * 0.02562 * 7 6 5 33 33 H 1.07999 * 120.65505 * 180.22587 * 8 7 6 34 34 H 1.07994 * 120.42690 * 179.76640 * 9 8 7 35 35 H 0.97001 * 119.99243 * 179.97438 * 14 13 11 36 36 H 1.08004 * 119.99897 * 359.97438 * 21 20 2 37 37 H 1.07999 * 119.99735 * 180.28105 * 22 21 20 38 38 H 1.08003 * 120.00266 * 179.84067 * 23 22 21 39 39 H 1.07993 * 120.00255 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.00198 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6525 0.0354 2.4423 6 6 2.0059 -0.4270 3.7027 7 6 2.7267 -1.6188 3.8235 8 6 3.0823 -2.0764 5.0826 9 6 2.7011 -1.3386 6.1896 10 6 1.9732 -0.1507 6.0030 11 6 1.5766 0.6129 7.1241 12 1 1.8332 0.2834 8.1200 13 6 0.8508 1.7967 6.9435 14 7 0.5396 2.1952 5.7377 15 14 0.3271 2.8064 8.4252 16 1 0.7992 2.1438 9.6676 17 1 0.9191 4.1651 8.3327 18 1 -1.1538 2.9126 8.4536 19 7 1.6522 0.2607 4.7719 20 6 2.0323 -0.7104 -1.2304 21 6 1.7030 -2.0355 -1.4463 22 6 2.1602 -2.6860 -2.5772 23 6 2.9542 -2.0140 -3.4876 24 6 3.2878 -0.6904 -3.2691 25 6 2.8270 -0.0387 -2.1404 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6054 -1.7199 1.2952 30 1 3.1263 -0.7995 1.2056 31 1 1.1484 0.8591 2.3517 32 1 3.0075 -2.1766 2.9424 33 1 3.6422 -2.9927 5.1976 34 1 2.9599 -1.6710 7.1839 35 1 0.0365 3.0151 5.6128 36 1 1.0860 -2.5618 -0.7330 37 1 1.8991 -3.7199 -2.7481 38 1 3.3135 -2.5229 -4.3698 39 1 3.9084 -0.1655 -3.9801 40 1 3.0876 0.9954 -1.9698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771751038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:59 Heat of formation + Delta-G solvation = 52.258609 kcal Electronic energy + Delta-G solvation = -20786.021020 eV Core-core repulsion = 17757.928833 eV Total energy + Delta-G solvation = -3028.092187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.62455 -38.21115 -36.18669 -33.78558 -32.73615 -30.98750 -30.35074 -29.61298 -28.44823 -25.72175 -25.29995 -23.21961 -22.48567 -21.48102 -20.46751 -19.79270 -17.36185 -16.99715 -16.21867 -15.53396 -15.06189 -14.80367 -14.63347 -14.18256 -14.15908 -13.60968 -13.45791 -13.36789 -12.92132 -12.69693 -12.63948 -12.17826 -11.98546 -11.83223 -11.40624 -11.23910 -11.05184 -10.94487 -10.81850 -10.68931 -10.51846 -10.37955 -9.86749 -9.46025 -8.99353 -8.84269 -8.76268 -7.87212 -7.47567 -6.46841 -6.29816 -4.44055 1.28235 1.32854 2.89139 3.13211 3.17716 3.27463 3.32713 3.70175 4.00667 4.19717 4.72147 4.80694 4.87465 4.92343 5.03392 5.10678 5.22698 5.42044 5.44474 5.49063 5.84386 5.88333 5.93546 5.99462 6.04647 6.17770 6.18984 6.20820 6.28687 6.40949 6.43821 6.62128 6.64134 6.89836 6.92716 6.93757 6.98627 7.28351 7.63791 7.85243 7.95887 8.20796 8.40514 8.72739 8.83935 9.16076 10.28015 10.43736 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.027788 B = 0.003441 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.402450 B = 8136.090798 C = 8808.926752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.064 4.064 3 H 0.083 0.917 4 C 0.152 3.848 5 N -0.738 5.738 6 C 0.412 3.588 7 C -0.367 4.367 8 C -0.032 4.032 9 C -0.317 4.317 10 C 0.292 3.708 11 C -0.435 4.435 12 H 0.083 0.917 13 C 0.071 3.929 14 N -0.716 5.716 15 Si 0.904 3.096 16 H -0.261 1.261 17 H -0.274 1.274 18 H -0.274 1.274 19 N -0.532 5.532 20 C -0.067 4.067 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.116 4.116 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.395 0.605 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.268 0.732 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.952 -3.456 -15.441 15.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 H 0.101 0.899 4 C 0.027 3.973 5 N -0.375 5.375 6 C 0.172 3.828 7 C -0.393 4.393 8 C -0.057 4.057 9 C -0.340 4.340 10 C 0.165 3.835 11 C -0.467 4.467 12 H 0.101 0.899 13 C -0.154 4.154 14 N -0.338 5.338 15 Si 0.729 3.271 16 H -0.185 1.185 17 H -0.200 1.200 18 H -0.200 1.200 19 N -0.253 5.253 20 C -0.067 4.067 21 C -0.130 4.130 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.134 4.134 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.230 0.770 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.463 -2.681 -15.731 15.965 hybrid contribution 0.151 -0.103 0.606 0.633 sum 0.614 -2.784 -15.125 15.392 Atomic orbital electron populations 1.21834 0.93718 1.02326 1.02049 1.20375 0.96649 0.99605 0.91672 0.89868 1.21054 0.98619 0.94555 0.83114 1.44132 1.63428 1.28180 1.01765 1.18516 0.89218 0.88763 0.86332 1.20616 1.19121 1.02865 0.96654 1.20594 0.95712 0.96593 0.92754 1.21531 1.13843 1.01737 0.96910 1.18205 0.87015 0.88508 0.89741 1.19607 1.29353 1.04526 0.93213 0.89898 1.26048 0.94965 0.97838 0.96515 1.70171 1.24027 1.17860 1.21745 0.86332 0.78799 0.79735 0.82255 1.18470 1.19979 1.19983 1.68210 1.28101 1.32448 0.96579 1.19796 0.97036 0.94204 0.95695 1.21082 1.00088 0.94316 0.97524 1.21138 0.98174 0.99831 0.94619 1.21117 0.99079 0.94935 0.99522 1.21116 1.00161 0.94992 0.97617 1.21108 0.97853 1.00025 0.94416 0.92779 0.91478 0.92435 0.92989 0.93113 0.77008 0.89268 0.89007 0.88754 0.92072 0.85878 0.86203 0.86401 0.86270 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.88 37.16 0.33 -1.41 16 2 C -0.06 -0.82 2.60 -91.77 -0.24 -1.06 16 3 H 0.08 1.05 7.88 -51.93 -0.41 0.64 16 4 C 0.15 2.44 4.01 -4.04 -0.02 2.42 16 5 N -0.74 -14.86 5.45 -60.39 -0.33 -15.18 16 6 C 0.41 10.21 7.65 -155.32 -1.19 9.03 16 7 C -0.37 -8.67 9.34 -38.87 -0.36 -9.03 16 8 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 9 C -0.32 -8.19 9.83 -38.65 -0.38 -8.57 16 10 C 0.29 8.27 6.55 -85.00 -0.56 7.71 16 11 C -0.43 -11.93 9.14 -37.74 -0.34 -12.28 16 12 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 13 C 0.07 1.84 5.50 -17.34 -0.10 1.74 16 14 N -0.72 -19.15 11.46 55.55 0.64 -18.52 16 15 Si 0.90 18.89 29.56 -169.99 -5.02 13.87 16 16 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 19 N -0.53 -14.89 7.89 -10.32 -0.08 -14.97 16 20 C -0.07 -0.80 4.78 -104.62 -0.50 -1.30 16 21 C -0.11 -1.28 8.76 -39.58 -0.35 -1.63 16 22 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 23 C -0.13 -1.24 10.05 -39.58 -0.40 -1.63 16 24 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 25 C -0.12 -1.28 9.67 -39.58 -0.38 -1.66 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.91 7.18 -51.93 -0.37 0.53 16 28 H 0.06 0.69 7.41 -51.93 -0.38 0.30 16 29 H 0.05 0.84 7.32 -51.93 -0.38 0.46 16 30 H 0.05 0.85 7.93 -51.93 -0.41 0.44 16 31 H 0.39 7.87 7.77 -40.82 -0.32 7.56 16 32 H 0.09 1.90 6.68 -52.49 -0.35 1.55 16 33 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 35 H 0.27 6.49 8.29 -40.82 -0.34 6.15 16 36 H 0.12 1.34 7.17 -52.48 -0.38 0.96 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.12 1.19 7.95 -52.49 -0.42 0.77 16 LS Contribution 334.52 15.07 5.04 5.04 Total: -1.00 -30.26 334.52 -10.94 -41.20 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.50 Total: 10.61 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -5.68 Total: -22.04 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.23 Total: -48.67 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.26 -10.94 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771751038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.457 kcal (2) G-P(sol) polarization free energy of solvation -30.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds