Wall clock time and date at job start Tue Mar 31 2020 05:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47338 * 2 1 4 4 C 1.38232 * 119.99913 * 90.00724 * 3 2 1 5 5 C 1.38232 * 120.00339 * 179.97438 * 4 3 2 6 6 C 1.38236 * 119.99824 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00251 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.46769 * 90.00266 * 7 6 5 9 9 C 1.38826 * 119.99929 * 179.72448 * 8 7 6 10 10 C 1.39803 * 119.58329 * 0.27967 * 9 8 7 11 11 C 1.38598 * 119.49027 * 179.97438 * 10 9 8 12 12 C 1.38380 * 118.68061 * 359.97438 * 11 10 9 13 13 C 1.40559 * 119.15236 * 0.02562 * 12 11 10 14 14 C 1.41316 * 119.78778 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99697 * 359.97438 * 14 13 12 16 16 C 1.40026 * 119.99906 * 179.97438 * 14 13 12 17 17 N 1.30740 * 120.00312 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99593 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47091 * 90.00550 * 18 16 14 20 20 H 1.48495 * 109.47055 * 210.00044 * 18 16 14 21 21 H 1.48496 * 109.47404 * 330.00456 * 18 16 14 22 22 N 1.31955 * 119.58557 * 180.02562 * 9 8 7 23 23 C 1.38237 * 119.99834 * 0.26431 * 6 5 4 24 24 C 1.38234 * 120.00010 * 359.48806 * 23 6 5 25 25 H 1.09004 * 109.46552 * 299.99891 * 1 2 3 26 26 H 1.09000 * 109.47098 * 59.99037 * 1 2 3 27 27 H 1.08993 * 109.47229 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47028 * 240.00344 * 2 1 3 29 29 H 1.08994 * 109.47408 * 120.00306 * 2 1 3 30 30 H 1.08001 * 120.00137 * 359.97438 * 4 3 2 31 31 H 1.08002 * 120.00459 * 179.97438 * 5 4 3 32 32 H 1.09004 * 109.47210 * 330.00623 * 7 6 5 33 33 H 1.08994 * 109.47121 * 210.00593 * 7 6 5 34 34 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 35 35 H 1.07998 * 120.25142 * 359.95312 * 10 9 8 36 36 H 1.08002 * 120.65631 * 180.02562 * 11 10 9 37 37 H 1.07998 * 120.42591 * 179.97438 * 12 11 10 38 38 H 0.96995 * 120.00059 * 179.97438 * 17 16 14 39 39 H 1.08000 * 119.99739 * 179.72353 * 23 6 5 40 40 H 1.08000 * 120.00050 * 180.25519 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2629 2.0723 1.1971 5 6 2.7242 3.3754 1.1972 6 6 2.9545 4.0272 0.0001 7 6 3.4569 5.4480 0.0001 8 7 4.9219 5.4478 -0.0001 9 6 5.6161 6.6500 -0.0060 10 6 4.9085 7.8557 -0.0056 11 6 5.6035 9.0548 -0.0109 12 6 6.9869 9.0205 -0.0158 13 6 7.6410 7.7764 -0.0159 14 6 9.0532 7.7258 -0.0203 15 1 9.6264 8.6412 -0.0241 16 6 9.7095 6.4888 -0.0199 17 7 9.0157 5.3807 -0.0158 18 14 11.5763 6.4220 -0.0265 19 1 12.0760 6.4074 1.3718 20 1 12.0250 5.1910 -0.7253 21 1 12.1118 7.6144 -0.7311 22 7 6.9357 6.6403 -0.0066 23 6 2.7183 3.3776 -1.1971 24 6 2.2618 2.0728 -1.1971 25 1 -0.3632 0.5139 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 2.0826 1.5633 2.1325 31 1 2.9040 3.8846 2.1326 32 1 3.0938 5.9618 0.8902 33 1 3.0934 5.9618 -0.8897 34 1 5.4069 4.6077 -0.0006 35 1 3.8285 7.8527 -0.0017 36 1 5.0759 9.9971 -0.0104 37 1 7.5567 9.9380 -0.0204 38 1 9.4702 4.5239 -0.0158 39 1 2.8939 3.8883 -2.1323 40 1 2.0812 1.5639 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771754008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:30 Heat of formation + Delta-G solvation = 49.022773 kcal Electronic energy + Delta-G solvation = -20496.820329 eV Core-core repulsion = 17468.587826 eV Total energy + Delta-G solvation = -3028.232503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.57424 -38.15324 -35.61380 -33.94367 -33.04611 -30.90123 -30.62722 -30.03193 -28.35642 -25.53893 -25.25671 -22.94983 -22.69661 -21.44643 -20.64541 -20.17362 -17.33564 -16.68694 -15.85988 -15.70199 -15.12183 -14.75280 -14.58835 -14.12855 -13.98709 -13.82255 -13.45445 -13.28896 -13.03388 -12.98541 -12.67723 -12.06511 -11.90225 -11.86003 -11.60621 -11.36228 -11.15256 -10.95802 -10.85748 -10.81192 -10.56315 -10.41602 -9.90122 -9.46205 -8.89118 -8.84398 -8.57916 -7.87457 -7.46960 -6.47422 -6.28971 -4.43991 1.29553 1.44713 2.90715 3.13281 3.16586 3.27381 3.33222 3.68556 4.01148 4.49613 4.63097 4.72498 4.87587 4.97807 5.02427 5.03591 5.16534 5.36194 5.44538 5.50233 5.68139 5.75639 5.83537 5.88337 5.96351 6.08589 6.11069 6.16647 6.18996 6.42897 6.59738 6.60870 6.73424 6.89619 6.92752 6.97131 7.03496 7.28785 7.63288 7.84893 7.95399 8.20624 8.40133 8.73031 8.84046 9.15990 10.28513 10.44239 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.020361 B = 0.003531 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.841974 B = 7927.769624 C = 8987.515822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.084 4.084 4 C -0.122 4.122 5 C -0.097 4.097 6 C -0.098 4.098 7 C 0.181 3.819 8 N -0.734 5.734 9 C 0.412 3.588 10 C -0.368 4.368 11 C -0.032 4.032 12 C -0.317 4.317 13 C 0.292 3.708 14 C -0.435 4.435 15 H 0.083 0.917 16 C 0.071 3.929 17 N -0.715 5.715 18 Si 0.905 3.095 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.262 1.262 22 N -0.532 5.532 23 C -0.097 4.097 24 C -0.122 4.122 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.396 0.604 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.269 0.731 39 H 0.123 0.877 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.089 -9.665 0.017 16.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.140 4.140 5 C -0.115 4.115 6 C -0.098 4.098 7 C 0.056 3.944 8 N -0.371 5.371 9 C 0.172 3.828 10 C -0.394 4.394 11 C -0.056 4.056 12 C -0.340 4.340 13 C 0.165 3.835 14 C -0.467 4.467 15 H 0.101 0.899 16 C -0.154 4.154 17 N -0.337 5.337 18 Si 0.729 3.271 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.186 1.186 22 N -0.253 5.253 23 C -0.115 4.115 24 C -0.140 4.140 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.231 0.769 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.141 0.859 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.803 -10.573 0.021 16.604 hybrid contribution 0.522 0.491 -0.002 0.717 sum -12.280 -10.082 0.019 15.889 Atomic orbital electron populations 1.21744 0.94834 1.01513 1.02235 1.20537 0.96068 0.92858 1.02771 1.19883 0.99149 0.96060 0.93303 1.20981 1.00689 0.94920 0.97412 1.21107 0.97990 0.94607 0.97835 1.20014 1.00036 0.96483 0.93300 1.19934 0.81954 0.91346 1.01153 1.44149 1.02881 1.06158 1.83941 1.18525 0.90060 0.84403 0.89833 1.20605 0.97555 0.92522 1.28721 1.20591 0.94091 0.95707 0.95244 1.21529 0.93855 0.98015 1.20619 1.18206 0.93122 0.85630 0.86522 1.19575 0.90267 0.93252 1.43586 0.89916 1.26051 1.00177 0.95562 0.93611 1.70153 1.36407 0.98005 1.29131 0.86384 0.82887 0.78719 0.79108 1.19530 1.20273 1.18618 1.68212 1.02372 1.29644 1.25080 1.21108 0.98009 0.94602 0.97828 1.20983 1.00716 0.94886 0.97413 0.92571 0.92564 0.92549 0.91122 0.91124 0.86277 0.85878 0.92352 0.92357 0.76895 0.89222 0.88959 0.88737 0.91973 0.85882 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.72 16 2 C -0.08 -0.73 6.06 -27.88 -0.17 -0.90 16 3 C -0.08 -0.93 5.13 -104.63 -0.54 -1.47 16 4 C -0.12 -1.42 9.70 -39.59 -0.38 -1.81 16 5 C -0.10 -1.28 9.70 -39.58 -0.38 -1.66 16 6 C -0.10 -1.39 5.25 -104.62 -0.55 -1.94 16 7 C 0.18 2.96 5.01 -5.19 -0.03 2.94 16 8 N -0.73 -15.22 5.71 -61.57 -0.35 -15.58 16 9 C 0.41 10.28 7.65 -155.32 -1.19 9.09 16 10 C -0.37 -8.65 9.34 -38.86 -0.36 -9.02 16 11 C -0.03 -0.76 10.15 -39.40 -0.40 -1.15 16 12 C -0.32 -8.18 9.83 -38.65 -0.38 -8.56 16 13 C 0.29 8.30 6.55 -85.00 -0.56 7.74 16 14 C -0.43 -11.98 9.14 -37.74 -0.34 -12.33 16 15 H 0.08 2.14 7.85 -52.49 -0.41 1.72 16 16 C 0.07 1.85 5.50 -17.35 -0.10 1.76 16 17 N -0.72 -19.38 11.46 55.55 0.64 -18.75 16 18 Si 0.90 19.03 29.56 -169.99 -5.02 14.00 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 22 N -0.53 -15.01 7.89 -10.32 -0.08 -15.09 16 23 C -0.10 -1.28 9.70 -39.58 -0.38 -1.66 16 24 C -0.12 -1.42 9.70 -39.58 -0.38 -1.81 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 29 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.06 0.94 7.87 -51.93 -0.41 0.53 16 33 H 0.06 0.94 7.86 -51.93 -0.41 0.53 16 34 H 0.40 8.43 8.58 -40.82 -0.35 8.08 16 35 H 0.09 1.87 6.68 -52.49 -0.35 1.52 16 36 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 37 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 38 H 0.27 6.64 8.29 -40.82 -0.34 6.30 16 39 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 340.31 15.07 5.13 5.13 Total: -1.00 -30.26 340.31 -11.18 -41.44 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -5.71 Total: 10.34 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -5.78 Total: -21.50 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.20 Total: -49.41 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.26 -11.18 -41.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771754008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.461 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds