Wall clock time and date at job start Tue Mar 31 2020 06:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29028 * 124.91855 * 2 1 4 4 C 1.31771 * 117.12878 * 180.02562 * 3 2 1 5 5 C 1.33644 * 114.50041 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.03938 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.46928 * 89.99963 * 6 5 4 8 8 N 1.46905 * 109.47048 * 179.97438 * 7 6 5 9 9 C 1.46897 * 110.99906 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.46967 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47128 * 299.99836 * 10 9 8 12 12 C 1.52999 * 109.47519 * 60.00031 * 10 9 8 13 13 C 1.53004 * 109.47069 * 179.97438 * 10 9 8 14 14 C 1.50701 * 109.47013 * 179.97438 * 13 10 9 15 15 H 1.07999 * 120.00043 * 0.02562 * 14 13 10 16 16 C 1.37881 * 119.99900 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99926 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00007 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46977 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47225 * 119.99736 * 18 16 14 21 21 H 1.48492 * 109.47044 * 239.99742 * 18 16 14 22 22 S 1.70979 * 124.91569 * 180.02562 * 2 1 3 23 23 H 1.08997 * 109.47106 * 269.99927 * 1 2 3 24 24 H 1.08995 * 109.46993 * 30.00161 * 1 2 3 25 25 H 1.08999 * 109.46860 * 149.99764 * 1 2 3 26 26 H 1.08002 * 122.75353 * 180.27327 * 4 3 2 27 27 H 1.08996 * 109.47247 * 210.00530 * 6 5 4 28 28 H 1.09005 * 109.47214 * 330.00706 * 6 5 4 29 29 H 1.08996 * 109.47620 * 300.00339 * 7 6 5 30 30 H 1.08997 * 109.46860 * 60.00543 * 7 6 5 31 31 H 1.00901 * 110.99539 * 56.04648 * 8 7 6 32 32 H 1.08997 * 109.47013 * 300.00091 * 9 8 7 33 33 H 1.09003 * 109.47209 * 60.00114 * 9 8 7 34 34 H 1.08998 * 109.47118 * 60.00226 * 11 10 9 35 35 H 1.08999 * 109.47194 * 180.02562 * 11 10 9 36 36 H 1.09003 * 109.46922 * 300.00275 * 11 10 9 37 37 H 1.08997 * 109.47308 * 59.99855 * 12 10 9 38 38 H 1.08999 * 109.47394 * 180.02562 * 12 10 9 39 39 H 1.09007 * 109.47051 * 299.99740 * 12 10 9 40 40 H 1.08997 * 109.47056 * 299.99714 * 13 10 9 41 41 H 1.08998 * 109.46635 * 59.99847 * 13 10 9 42 42 H 0.97000 * 119.99830 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 3.9354 -0.4006 -0.0004 6 6 5.3575 -0.8994 -0.0004 7 6 5.8387 -1.0681 1.4421 8 7 7.2247 -1.5549 1.4422 9 6 7.7212 -1.7297 2.8136 10 6 9.1645 -2.2359 2.7729 11 6 9.2140 -3.5768 2.0378 12 6 10.0411 -1.2192 2.0388 13 6 9.6818 -2.4173 4.2013 14 6 11.1032 -2.9165 4.1611 15 1 11.5891 -3.0869 3.2118 16 6 11.7833 -3.1557 5.3364 17 7 11.1915 -2.9486 6.4925 18 14 13.5454 -3.7738 5.2867 19 1 13.9771 -3.9252 3.8739 20 1 14.4312 -2.7999 5.9738 21 1 13.6284 -5.0881 5.9727 22 16 2.4856 -1.4020 -0.0006 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 4.2532 1.7001 0.0038 27 1 5.4058 -1.8594 -0.5143 28 1 5.9950 -0.1798 -0.5142 29 1 5.7904 -0.1081 1.9560 30 1 5.2013 -1.7877 1.9559 31 1 7.8248 -0.9376 0.9159 32 1 7.6863 -0.7743 3.3371 33 1 7.0965 -2.4537 3.3368 34 1 8.8456 -3.4472 1.0202 35 1 10.2421 -3.9377 2.0092 36 1 8.5895 -4.3011 2.5608 37 1 10.0058 -0.2639 2.5624 38 1 11.0692 -1.5801 2.0094 39 1 9.6727 -1.0896 1.0211 40 1 9.6466 -1.4618 4.7245 41 1 9.0574 -3.1414 4.7246 42 1 11.6701 -3.1165 7.3193 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771981747.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:52 Heat of formation + Delta-G solvation = -2.737636 kcal Electronic energy + Delta-G solvation = -19321.033598 eV Core-core repulsion = 16426.000546 eV Total energy + Delta-G solvation = -2895.033051 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.69289 -39.25719 -36.63371 -34.63778 -33.51858 -31.44040 -29.06074 -27.94977 -27.86793 -26.33738 -24.95267 -24.05729 -22.96132 -20.32057 -19.47527 -18.97446 -18.33204 -16.91594 -16.66774 -16.31848 -15.90628 -15.58054 -15.44199 -15.06343 -14.68135 -14.38621 -14.20346 -13.93304 -13.80528 -13.64972 -13.41558 -13.01472 -12.88442 -12.75216 -12.64643 -12.64108 -12.42339 -12.23503 -12.13668 -11.89133 -11.80728 -11.36655 -10.86360 -10.76207 -10.59702 -10.51242 -10.20467 -9.68559 -9.33815 -8.14070 -6.20986 -0.27688 0.38066 0.78375 1.40384 1.41439 1.53638 1.82596 2.43823 3.15939 3.19977 3.32962 3.96848 4.07873 4.13722 4.16164 4.22146 4.30989 4.40467 4.49215 4.62552 4.65570 4.66664 4.76269 4.81670 4.95661 5.00584 5.03134 5.09637 5.10835 5.22906 5.23654 5.28450 5.52796 5.54985 5.59902 5.66152 5.87954 5.93250 6.03416 6.36691 6.53301 6.76209 6.94605 7.46412 8.98557 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.046113 B = 0.002527 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.051904 B =11079.033641 C =11174.742578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.031 3.969 3 N -0.506 5.506 4 C 0.022 3.978 5 C -0.221 4.221 6 C -0.030 4.030 7 C 0.067 3.933 8 N -0.680 5.680 9 C 0.083 3.917 10 C -0.055 4.055 11 C -0.108 4.108 12 C -0.123 4.123 13 C 0.037 3.963 14 C -0.511 4.511 15 H 0.067 0.933 16 C -0.007 4.007 17 N -0.939 5.939 18 Si 0.957 3.043 19 H -0.260 1.260 20 H -0.283 1.283 21 H -0.283 1.283 22 S 0.136 5.864 23 H 0.096 0.904 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.184 0.816 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.027 0.973 30 H 0.062 0.938 31 H 0.348 0.652 32 H 0.016 0.984 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.039 0.961 36 H 0.029 0.971 37 H 0.036 0.964 38 H 0.047 0.953 39 H 0.071 0.929 40 H -0.017 1.017 41 H -0.017 1.017 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.889 4.809 -16.605 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.246 4.246 3 N -0.222 5.222 4 C -0.129 4.129 5 C -0.342 4.342 6 C -0.070 4.070 7 C -0.063 4.063 8 N -0.313 5.313 9 C -0.047 4.047 10 C -0.055 4.055 11 C -0.165 4.165 12 C -0.181 4.181 13 C 0.000 4.000 14 C -0.549 4.549 15 H 0.085 0.915 16 C -0.204 4.204 17 N -0.581 5.581 18 Si 0.783 3.217 19 H -0.183 1.183 20 H -0.209 1.209 21 H -0.209 1.209 22 S 0.391 5.609 23 H 0.114 0.886 24 H 0.110 0.890 25 H 0.119 0.881 26 H 0.201 0.799 27 H 0.107 0.893 28 H 0.118 0.882 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.168 0.832 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.002 0.998 41 H 0.001 0.999 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.543 3.593 -16.517 25.839 hybrid contribution 1.697 1.412 1.201 2.513 sum -17.846 5.005 -15.316 24.044 Atomic orbital electron populations 1.20606 0.83083 1.05281 1.04903 1.27637 1.03240 0.90971 1.02717 1.66315 1.05542 1.32803 1.17521 1.21948 0.91223 0.96593 1.03093 1.26027 1.00538 0.96163 1.11498 1.19934 0.87575 1.02876 0.96640 1.21909 0.90022 0.98098 0.96244 1.60468 1.02895 1.54170 1.13740 1.21802 0.95475 0.98175 0.89228 1.20487 0.92913 0.96231 0.95868 1.21513 1.00097 0.95291 0.99580 1.21700 0.99781 0.97397 0.99183 1.19037 0.95024 0.94059 0.91904 1.21650 0.98747 1.42157 0.92367 0.91459 1.25951 1.02519 0.96442 0.95442 1.70122 1.38829 1.51199 0.97913 0.85504 0.79902 0.77699 0.78607 1.18333 1.20868 1.20918 1.83986 0.97242 1.11755 1.67914 0.88563 0.89037 0.88104 0.79934 0.89257 0.88221 0.95437 0.91989 0.83232 0.96531 0.92731 0.91092 0.94240 0.95216 0.94510 0.93418 0.91042 0.99848 0.99856 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.46 71.24 0.75 -0.07 16 2 C 0.03 0.57 7.39 88.52 0.65 1.22 16 3 N -0.51 -11.36 10.54 -191.44 -2.02 -13.37 16 4 C 0.02 0.44 11.25 83.66 0.94 1.38 16 5 C -0.22 -4.18 5.85 24.64 0.14 -4.04 16 6 C -0.03 -0.52 6.01 29.85 0.18 -0.34 16 7 C 0.07 1.49 5.67 86.30 0.49 1.98 16 8 N -0.68 -17.50 5.71 -513.89 -2.94 -20.44 16 9 C 0.08 2.79 4.65 86.30 0.40 3.19 16 10 C -0.05 -2.14 0.60 -52.18 -0.03 -2.17 16 11 C -0.11 -4.01 8.06 71.98 0.58 -3.43 16 12 C -0.12 -4.32 7.89 71.98 0.57 -3.75 16 13 C 0.04 1.94 4.04 29.85 0.12 2.06 16 14 C -0.51 -28.25 7.65 25.60 0.20 -28.05 16 15 H 0.07 3.56 5.68 -2.91 -0.02 3.54 16 16 C -0.01 -0.41 5.46 84.66 0.46 0.06 16 17 N -0.94 -57.72 13.29 21.45 0.28 -57.43 16 18 Si 0.96 44.51 29.54 68.60 2.03 46.53 16 19 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 S 0.14 2.33 23.18 -56.49 -1.31 1.02 16 23 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.18 3.12 8.06 -2.91 -0.02 3.09 16 27 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.35 7.97 6.77 -89.69 -0.61 7.36 16 32 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 2.24 7.60 -2.39 -0.02 2.22 16 35 H 0.04 1.57 6.62 -2.39 -0.02 1.56 16 36 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 38 H 0.05 1.83 6.62 -2.39 -0.02 1.82 16 39 H 0.07 1.96 6.57 -2.38 -0.02 1.94 16 40 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 41 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 42 H 0.26 15.05 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -66.71 350.63 1.88 -64.83 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.38 Total: 10.83 kcal Atomic # 6 Polarization: -37.42 SS G_CDS: 5.45 Total: -31.97 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -4.67 Total: -91.25 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -1.31 Total: 1.02 kcal Total: -66.71 1.88 -64.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771981747.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.091 kcal (2) G-P(sol) polarization free energy of solvation -66.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds