Wall clock time and date at job start Tue Mar 31 2020 06:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47074 * 2 1 4 4 C 1.50702 * 109.54393 * 66.09953 * 3 2 1 5 5 O 1.20836 * 120.00046 * 113.34185 * 4 3 2 6 6 O 1.34218 * 120.00190 * 293.34295 * 4 3 2 7 7 C 1.45203 * 117.00628 * 175.17307 * 6 4 3 8 8 C 1.52997 * 109.47705 * 184.63097 * 7 6 4 9 9 C 1.50705 * 115.54925 * 282.31048 * 8 7 6 10 10 H 1.07995 * 119.99709 * 143.73728 * 9 8 7 11 11 C 1.37877 * 119.99662 * 323.74057 * 9 8 7 12 12 N 1.31514 * 120.00250 * 336.06369 * 11 9 8 13 13 Si 1.86798 * 119.99638 * 156.06635 * 11 9 8 14 14 H 1.48496 * 109.47518 * 59.99953 * 13 11 9 15 15 H 1.48505 * 109.46802 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47149 * 299.99280 * 13 11 9 17 17 C 1.52996 * 117.49837 * 136.60127 * 8 7 6 18 18 C 1.53005 * 117.49934 * 67.97620 * 8 7 6 19 19 C 1.53177 * 109.54583 * 305.83483 * 3 2 1 20 20 C 1.53095 * 109.16040 * 297.11332 * 19 3 2 21 21 O 1.42906 * 109.41641 * 302.38761 * 20 19 3 22 22 C 1.42906 * 114.09514 * 61.16077 * 21 20 19 23 23 C 1.53095 * 109.41567 * 298.84055 * 22 21 20 24 24 H 1.09000 * 109.47076 * 293.30080 * 1 2 3 25 25 H 1.08994 * 109.47181 * 53.30041 * 1 2 3 26 26 H 1.09002 * 109.47161 * 173.30060 * 1 2 3 27 27 H 1.08999 * 109.47102 * 120.00167 * 2 1 3 28 28 H 1.09001 * 109.47106 * 240.00250 * 2 1 3 29 29 H 1.09005 * 109.46902 * 304.63498 * 7 6 4 30 30 H 1.08998 * 109.46708 * 64.62646 * 7 6 4 31 31 H 0.97000 * 120.00194 * 185.02517 * 12 11 9 32 32 H 1.08999 * 117.50407 * 359.97438 * 17 8 7 33 33 H 1.09000 * 117.49606 * 145.02633 * 17 8 7 34 34 H 1.08998 * 117.49853 * 214.98325 * 18 8 7 35 35 H 1.09001 * 117.49778 * 359.97438 * 18 8 7 36 36 H 1.08998 * 109.52432 * 57.01611 * 19 3 2 37 37 H 1.09006 * 109.52250 * 177.21006 * 19 3 2 38 38 H 1.09002 * 109.47774 * 182.40983 * 20 19 3 39 39 H 1.08999 * 109.49221 * 62.37575 * 20 19 3 40 40 H 1.09004 * 109.48009 * 178.86184 * 22 21 20 41 41 H 1.08999 * 109.49205 * 58.83021 * 22 21 20 42 42 H 1.08997 * 109.52518 * 297.70560 * 23 22 21 43 43 H 1.08997 * 109.57336 * 177.54469 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6655 2.1096 1.2984 5 8 2.5268 2.4339 2.0814 6 8 0.3753 2.3435 1.5851 7 6 0.0802 2.8902 2.8975 8 6 -1.4358 2.9797 3.0837 9 6 -2.1089 4.1350 2.3885 10 1 -3.0910 4.0079 1.9577 11 6 -1.4708 5.3542 2.3024 12 7 -0.5436 5.6745 3.1783 13 14 -1.9234 6.5511 0.9415 14 1 -3.3611 6.9058 1.0520 15 1 -1.0997 7.7802 1.0692 16 1 -1.6693 5.9194 -0.3781 17 6 -2.0098 2.5332 4.4298 18 6 -2.2138 1.6662 3.1856 19 6 1.4140 2.2073 -1.1703 20 6 1.8638 1.5679 -2.4865 21 8 3.2912 1.5768 -2.5556 22 6 3.9304 0.8372 -1.5132 23 6 3.5636 1.4473 -0.1578 24 1 -0.3633 0.4065 0.9438 25 1 -0.3633 0.6141 -0.8239 26 1 -0.3633 -1.0207 -0.1199 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 0.5028 2.2414 3.6648 30 1 0.5162 3.8855 2.9829 31 1 -0.1464 6.5593 3.1626 32 1 -1.3075 2.1752 5.1826 33 1 -2.8745 3.0751 4.8128 34 1 -3.2127 1.6379 2.7502 35 1 -1.6457 0.7383 3.1196 36 1 0.3275 2.1617 -1.0958 37 1 1.7388 3.2475 -1.1410 38 1 1.4558 2.1341 -3.3238 39 1 1.5041 0.5400 -2.5331 40 1 5.0112 0.8772 -1.6493 41 1 3.5978 -0.2003 -1.5467 42 1 3.9317 2.4721 -0.1080 43 1 4.0145 0.8591 0.6414 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779214083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:55 Heat of formation + Delta-G solvation = -116.950089 kcal Electronic energy + Delta-G solvation = -24083.872355 eV Core-core repulsion = 20708.841058 eV Total energy + Delta-G solvation = -3375.031297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.75016 -38.88665 -36.82827 -35.27069 -35.16191 -32.27044 -31.34790 -30.37991 -27.17557 -25.86946 -25.16980 -23.82169 -22.86628 -21.42560 -21.01233 -19.22514 -18.52265 -17.10933 -16.77855 -16.06456 -16.03733 -15.71629 -15.24067 -14.80028 -14.66425 -14.17676 -13.91774 -13.84893 -13.36141 -12.97240 -12.53581 -12.27605 -12.13671 -11.88468 -11.80153 -11.69685 -11.30974 -11.10738 -10.97606 -10.90498 -10.82084 -10.53033 -10.40789 -10.35010 -10.21553 -10.02812 -9.74036 -9.56835 -9.23965 -9.13626 -8.77507 -8.09699 -6.19457 -4.11414 2.81076 3.24865 3.32288 3.33533 3.35915 3.83880 4.32119 4.50740 4.71817 4.74714 4.89240 4.95506 5.10101 5.15368 5.18187 5.41858 5.43853 5.52396 5.56899 5.67641 5.71588 5.74615 5.82920 5.96854 6.00632 6.06065 6.11027 6.19392 6.26258 6.34494 6.38923 6.57759 6.63776 6.68584 6.76130 6.94091 7.12649 7.25190 7.36543 7.46031 7.84912 8.32235 8.50964 8.79455 9.43245 10.85538 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017439 B = 0.006222 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.216675 B = 4499.361159 C = 5115.728138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.113 4.113 3 C -0.050 4.050 4 C 0.463 3.537 5 O -0.521 6.521 6 O -0.333 6.333 7 C 0.098 3.902 8 C 0.052 3.948 9 C -0.495 4.495 10 H 0.065 0.935 11 C 0.075 3.925 12 N -0.870 5.870 13 Si 0.886 3.114 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.272 1.272 17 C -0.192 4.192 18 C -0.201 4.201 19 C -0.150 4.150 20 C 0.063 3.937 21 O -0.384 6.384 22 C 0.062 3.938 23 C -0.136 4.136 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.114 0.886 31 H 0.266 0.734 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.095 0.905 41 H 0.054 0.946 42 H 0.080 0.920 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.324 -10.613 -8.760 14.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.150 4.150 3 C -0.051 4.051 4 C 0.306 3.694 5 O -0.411 6.411 6 O -0.248 6.248 7 C 0.025 3.975 8 C 0.051 3.949 9 C -0.531 4.531 10 H 0.083 0.917 11 C -0.129 4.129 12 N -0.506 5.506 13 Si 0.713 3.287 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.197 1.197 17 C -0.230 4.230 18 C -0.238 4.238 19 C -0.187 4.187 20 C -0.014 4.014 21 O -0.303 6.303 22 C -0.014 4.014 23 C -0.174 4.174 24 H 0.097 0.903 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.132 0.868 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.074 0.926 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.816 -10.247 -8.621 14.600 hybrid contribution -0.321 0.641 -0.036 0.718 sum 5.495 -9.606 -8.657 14.050 Atomic orbital electron populations 1.22030 0.94074 1.01338 1.04686 1.21623 0.97745 0.93175 1.02490 1.20553 0.96570 0.96466 0.91492 1.23280 0.82030 0.76176 0.87932 1.90603 1.51007 1.49049 1.50397 1.86490 1.25681 1.73743 1.38891 1.23023 0.96970 0.99924 0.77568 1.18816 0.88617 0.92339 0.95102 1.20363 1.02970 0.93886 1.35899 0.91671 1.24965 0.94759 0.97932 0.95238 1.69904 1.27873 1.20544 1.32268 0.86743 0.78542 0.79897 0.83534 1.20076 1.21232 1.19744 1.22998 1.03426 1.04886 0.91700 1.22821 1.01600 0.95239 1.04169 1.22338 1.02981 1.00180 0.93222 1.22629 0.81005 1.00352 0.97406 1.87922 1.19145 1.73833 1.49351 1.22637 0.97966 0.94499 0.86330 1.22113 0.93258 1.03741 0.98258 0.90270 0.91746 0.92963 0.91573 0.90785 0.94843 0.86843 0.92375 0.91658 0.89762 0.90324 0.91340 0.88267 0.90519 0.88532 0.92644 0.88648 0.92823 0.90145 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.08 37.16 0.34 -1.81 16 2 C -0.11 -1.40 4.41 -26.73 -0.12 -1.52 16 3 C -0.05 -0.74 0.51 -155.47 -0.08 -0.82 16 4 C 0.46 9.22 6.48 36.01 0.23 9.45 16 5 O -0.52 -11.76 15.76 -18.76 -0.30 -12.06 16 6 O -0.33 -7.29 7.70 -39.23 -0.30 -7.59 16 7 C 0.10 2.38 5.11 37.16 0.19 2.57 16 8 C 0.05 1.27 1.97 -155.66 -0.31 0.97 16 9 C -0.49 -13.26 8.96 -34.44 -0.31 -13.57 16 10 H 0.07 1.73 7.92 -52.49 -0.42 1.32 16 11 C 0.08 2.03 5.00 -17.82 -0.09 1.94 16 12 N -0.87 -24.33 11.29 55.43 0.63 -23.71 16 13 Si 0.89 20.75 29.60 -169.99 -5.03 15.72 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 C -0.19 -4.31 9.88 -26.73 -0.26 -4.58 16 18 C -0.20 -4.26 9.95 -26.73 -0.27 -4.52 16 19 C -0.15 -2.13 4.37 -26.59 -0.12 -2.25 16 20 C 0.06 0.72 6.57 37.21 0.24 0.97 16 21 O -0.38 -4.90 10.77 -35.23 -0.38 -5.28 16 22 C 0.06 0.68 6.57 37.21 0.24 0.92 16 23 C -0.14 -1.83 4.22 -26.59 -0.11 -1.94 16 24 H 0.08 1.27 6.19 -51.93 -0.32 0.95 16 25 H 0.06 0.82 5.89 -51.93 -0.31 0.51 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.75 5.04 -51.93 -0.26 0.49 16 29 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 30 H 0.11 3.13 5.58 -51.93 -0.29 2.84 16 31 H 0.27 7.14 8.32 -40.82 -0.34 6.80 16 32 H 0.06 1.38 8.10 -51.93 -0.42 0.96 16 33 H 0.08 1.90 8.14 -51.93 -0.42 1.47 16 34 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.10 1.45 5.99 -51.93 -0.31 1.14 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.55 6.74 -51.93 -0.35 0.20 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.50 6.47 -51.93 -0.34 0.16 16 42 H 0.08 1.21 8.11 -51.93 -0.42 0.79 16 43 H 0.08 1.06 8.11 -51.93 -0.42 0.64 16 LS Contribution 335.04 15.07 5.05 5.05 Total: -1.00 -29.56 335.04 -7.53 -37.09 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.78 Total: 4.96 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -0.41 Total: -14.18 kcal Atomic # 7 Polarization: -24.33 SS G_CDS: 0.63 Total: -23.71 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.98 Total: -24.93 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.56 -7.53 -37.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779214083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.857 kcal (2) G-P(sol) polarization free energy of solvation -29.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds