Wall clock time and date at job start Tue Mar 31 2020 06:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47074 * 2 1 4 4 C 1.50702 * 109.54393 * 66.09953 * 3 2 1 5 5 O 1.20836 * 120.00046 * 113.34185 * 4 3 2 6 6 O 1.34218 * 120.00190 * 293.34295 * 4 3 2 7 7 C 1.45203 * 117.00628 * 175.17307 * 6 4 3 8 8 C 1.52997 * 109.47705 * 184.63097 * 7 6 4 9 9 C 1.50705 * 115.54925 * 282.31048 * 8 7 6 10 10 H 1.07995 * 119.99709 * 143.73728 * 9 8 7 11 11 C 1.37877 * 119.99662 * 323.74057 * 9 8 7 12 12 N 1.31514 * 120.00250 * 336.06369 * 11 9 8 13 13 Si 1.86798 * 119.99638 * 156.06635 * 11 9 8 14 14 H 1.48496 * 109.47518 * 59.99953 * 13 11 9 15 15 H 1.48505 * 109.46802 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47149 * 299.99280 * 13 11 9 17 17 C 1.52996 * 117.49837 * 136.60127 * 8 7 6 18 18 C 1.53005 * 117.49934 * 67.97620 * 8 7 6 19 19 C 1.53177 * 109.54583 * 305.83483 * 3 2 1 20 20 C 1.53095 * 109.16040 * 297.11332 * 19 3 2 21 21 O 1.42906 * 109.41641 * 302.38761 * 20 19 3 22 22 C 1.42906 * 114.09514 * 61.16077 * 21 20 19 23 23 C 1.53095 * 109.41567 * 298.84055 * 22 21 20 24 24 H 1.09000 * 109.47076 * 293.30080 * 1 2 3 25 25 H 1.08994 * 109.47181 * 53.30041 * 1 2 3 26 26 H 1.09002 * 109.47161 * 173.30060 * 1 2 3 27 27 H 1.08999 * 109.47102 * 120.00167 * 2 1 3 28 28 H 1.09001 * 109.47106 * 240.00250 * 2 1 3 29 29 H 1.09005 * 109.46902 * 304.63498 * 7 6 4 30 30 H 1.08998 * 109.46708 * 64.62646 * 7 6 4 31 31 H 0.97000 * 120.00194 * 185.02517 * 12 11 9 32 32 H 1.08999 * 117.50407 * 359.97438 * 17 8 7 33 33 H 1.09000 * 117.49606 * 145.02633 * 17 8 7 34 34 H 1.08998 * 117.49853 * 214.98325 * 18 8 7 35 35 H 1.09001 * 117.49778 * 359.97438 * 18 8 7 36 36 H 1.08998 * 109.52432 * 57.01611 * 19 3 2 37 37 H 1.09006 * 109.52250 * 177.21006 * 19 3 2 38 38 H 1.09002 * 109.47774 * 182.40983 * 20 19 3 39 39 H 1.08999 * 109.49221 * 62.37575 * 20 19 3 40 40 H 1.09004 * 109.48009 * 178.86184 * 22 21 20 41 41 H 1.08999 * 109.49205 * 58.83021 * 22 21 20 42 42 H 1.08997 * 109.52518 * 297.70560 * 23 22 21 43 43 H 1.08997 * 109.57336 * 177.54469 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6655 2.1096 1.2984 5 8 2.5268 2.4339 2.0814 6 8 0.3753 2.3435 1.5851 7 6 0.0802 2.8902 2.8975 8 6 -1.4358 2.9797 3.0837 9 6 -2.1089 4.1350 2.3885 10 1 -3.0910 4.0079 1.9577 11 6 -1.4708 5.3542 2.3024 12 7 -0.5436 5.6745 3.1783 13 14 -1.9234 6.5511 0.9415 14 1 -3.3611 6.9058 1.0520 15 1 -1.0997 7.7802 1.0692 16 1 -1.6693 5.9194 -0.3781 17 6 -2.0098 2.5332 4.4298 18 6 -2.2138 1.6662 3.1856 19 6 1.4140 2.2073 -1.1703 20 6 1.8638 1.5679 -2.4865 21 8 3.2912 1.5768 -2.5556 22 6 3.9304 0.8372 -1.5132 23 6 3.5636 1.4473 -0.1578 24 1 -0.3633 0.4065 0.9438 25 1 -0.3633 0.6141 -0.8239 26 1 -0.3633 -1.0207 -0.1199 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 0.5028 2.2414 3.6648 30 1 0.5162 3.8855 2.9829 31 1 -0.1464 6.5593 3.1626 32 1 -1.3075 2.1752 5.1826 33 1 -2.8745 3.0751 4.8128 34 1 -3.2127 1.6379 2.7502 35 1 -1.6457 0.7383 3.1196 36 1 0.3275 2.1617 -1.0958 37 1 1.7388 3.2475 -1.1410 38 1 1.4558 2.1341 -3.3238 39 1 1.5041 0.5400 -2.5331 40 1 5.0112 0.8772 -1.6493 41 1 3.5978 -0.2003 -1.5467 42 1 3.9317 2.4721 -0.1080 43 1 4.0145 0.8591 0.6414 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779214083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:54 Heat of formation + Delta-G solvation = -132.948973 kcal Electronic energy + Delta-G solvation = -24084.566119 eV Core-core repulsion = 20708.841058 eV Total energy + Delta-G solvation = -3375.725061 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.10785 -40.22527 -38.59738 -36.91787 -36.37977 -34.30558 -32.34256 -31.41162 -28.88075 -27.62222 -26.71438 -24.87032 -23.87348 -23.09615 -22.51300 -21.15592 -19.81037 -18.59414 -18.41845 -17.65834 -17.37173 -16.93621 -16.61202 -16.45183 -15.90051 -15.61930 -15.31499 -15.17809 -14.65469 -14.50502 -13.91761 -13.78060 -13.55881 -13.48649 -13.14200 -12.91528 -12.82892 -12.74961 -12.43738 -12.34098 -12.24664 -12.10719 -11.86016 -11.71818 -11.56537 -11.41731 -11.29625 -11.12434 -11.05877 -10.66466 -10.43470 -10.05124 -8.23958 -6.20803 1.22206 1.36053 1.41535 1.47754 1.79744 2.35765 2.89531 2.96358 3.36318 3.49184 3.60561 3.69219 3.91295 3.97062 4.12954 4.21932 4.22546 4.31611 4.44668 4.47646 4.52358 4.55834 4.64993 4.72772 4.75709 4.76948 4.82644 4.90280 4.94477 4.99498 5.04382 5.11434 5.14560 5.22072 5.29441 5.39913 5.49751 5.59231 5.74159 5.78079 6.24283 6.30661 6.73237 6.84132 7.35776 8.80379 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017439 B = 0.006222 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.216675 B = 4499.361159 C = 5115.728138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.107 4.107 3 C -0.046 4.046 4 C 0.454 3.546 5 O -0.556 6.556 6 O -0.334 6.334 7 C 0.108 3.892 8 C 0.015 3.985 9 C -0.508 4.508 10 H 0.062 0.938 11 C 0.030 3.970 12 N -0.901 5.901 13 Si 0.941 3.059 14 H -0.265 1.265 15 H -0.288 1.288 16 H -0.268 1.268 17 C -0.191 4.191 18 C -0.170 4.170 19 C -0.150 4.150 20 C 0.068 3.932 21 O -0.398 6.398 22 C 0.066 3.934 23 C -0.135 4.135 24 H 0.045 0.955 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.264 0.736 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.049 0.951 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.110 -12.841 -10.911 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.144 4.144 3 C -0.047 4.047 4 C 0.299 3.701 5 O -0.447 6.447 6 O -0.249 6.249 7 C 0.035 3.965 8 C 0.014 3.986 9 C -0.545 4.545 10 H 0.080 0.920 11 C -0.171 4.171 12 N -0.538 5.538 13 Si 0.766 3.234 14 H -0.189 1.189 15 H -0.214 1.214 16 H -0.193 1.193 17 C -0.229 4.229 18 C -0.207 4.207 19 C -0.187 4.187 20 C -0.008 4.008 21 O -0.317 6.317 22 C -0.010 4.010 23 C -0.173 4.173 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.128 0.872 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.067 0.933 38 H 0.128 0.872 39 H 0.101 0.899 40 H 0.132 0.868 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.587 -12.487 -10.783 17.419 hybrid contribution -0.238 1.318 0.685 1.504 sum 5.348 -11.169 -10.098 15.979 Atomic orbital electron populations 1.22014 0.94447 1.02712 1.02925 1.21672 0.97337 0.91109 1.04251 1.20768 0.97763 0.97727 0.88453 1.24527 0.80879 0.75308 0.89365 1.90576 1.51552 1.50563 1.52047 1.86528 1.27123 1.73652 1.37618 1.22620 0.96945 0.98034 0.78915 1.18897 0.88846 0.93904 0.96910 1.20632 1.03048 0.94760 1.36076 0.91992 1.25647 0.94962 0.99677 0.96799 1.70024 1.29189 1.20764 1.33778 0.85869 0.78674 0.77897 0.80992 1.18935 1.21379 1.19274 1.22993 1.03194 1.05025 0.91697 1.22823 1.01480 0.94390 1.02036 1.22353 1.02578 0.98975 0.94818 1.22711 0.80614 1.01773 0.95750 1.87920 1.19699 1.74433 1.49667 1.22782 0.99142 0.95228 0.83871 1.22149 0.91978 1.02613 1.00526 0.93618 0.91479 0.90402 0.91519 0.87159 0.94982 0.90498 0.92704 0.90622 0.90196 0.89400 0.89357 0.88824 0.93254 0.87155 0.89925 0.86753 0.90017 0.92860 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 9.08 71.98 0.65 -3.22 16 2 C -0.11 -2.34 4.41 30.59 0.13 -2.20 16 3 C -0.05 -1.33 0.51 -52.81 -0.03 -1.36 16 4 C 0.45 18.52 6.48 71.24 0.46 18.98 16 5 O -0.56 -26.17 15.76 21.93 0.35 -25.82 16 6 O -0.33 -14.99 7.70 -51.30 -0.40 -15.38 16 7 C 0.11 5.46 5.11 71.98 0.37 5.83 16 8 C 0.01 0.74 1.97 -52.93 -0.10 0.64 16 9 C -0.51 -27.61 8.96 25.60 0.23 -27.38 16 10 H 0.06 3.31 7.92 -2.91 -0.02 3.28 16 11 C 0.03 1.66 5.00 84.65 0.42 2.09 16 12 N -0.90 -52.16 11.29 21.45 0.24 -51.91 16 13 Si 0.94 43.16 29.60 68.60 2.03 45.19 16 14 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 15 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 17 C -0.19 -8.52 9.88 30.59 0.30 -8.22 16 18 C -0.17 -7.00 9.95 30.60 0.30 -6.69 16 19 C -0.15 -4.12 4.37 30.69 0.13 -3.98 16 20 C 0.07 1.35 6.57 72.01 0.47 1.83 16 21 O -0.40 -8.98 10.77 -148.98 -1.60 -10.58 16 22 C 0.07 1.22 6.57 72.01 0.47 1.69 16 23 C -0.13 -3.48 4.22 30.69 0.13 -3.35 16 24 H 0.04 1.40 6.19 -2.39 -0.01 1.38 16 25 H 0.07 1.53 5.89 -2.39 -0.01 1.52 16 26 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.11 1.66 5.04 -2.39 -0.01 1.65 16 29 H 0.03 1.57 7.93 -2.38 -0.02 1.55 16 30 H 0.08 4.47 5.58 -2.39 -0.01 4.46 16 31 H 0.26 14.68 8.32 -92.71 -0.77 13.91 16 32 H 0.08 3.17 8.10 -2.39 -0.02 3.15 16 33 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 34 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 35 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 36 H 0.09 2.66 5.99 -2.39 -0.01 2.65 16 37 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.11 1.91 8.14 -2.39 -0.02 1.90 16 39 H 0.08 1.23 6.74 -2.39 -0.02 1.22 16 40 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 41 H 0.08 1.09 6.47 -2.39 -0.02 1.08 16 42 H 0.05 1.64 8.11 -2.39 -0.02 1.62 16 43 H 0.08 2.11 8.11 -2.39 -0.02 2.09 16 Total: -1.00 -66.20 335.04 5.57 -60.63 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.99 Total: 23.23 kcal Atomic # 6 Polarization: -29.30 SS G_CDS: 3.96 Total: -25.35 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: 0.24 Total: -51.91 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -1.65 Total: -51.79 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -66.20 5.57 -60.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779214083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.319 kcal (2) G-P(sol) polarization free energy of solvation -66.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds