Wall clock time and date at job start Tue Mar 31 2020 07:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99527 * 2 1 4 4 C 1.53002 * 109.46997 * 244.57388 * 3 2 1 5 5 C 1.52998 * 109.47473 * 4.57629 * 3 2 1 6 6 C 1.53001 * 109.46959 * 186.16775 * 5 3 2 7 7 O 1.42902 * 109.47089 * 175.31489 * 6 5 3 8 8 C 1.42896 * 114.00205 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.46969 * 124.57558 * 3 2 1 10 10 O 1.20823 * 120.00069 * 238.04355 * 9 3 2 11 11 O 1.34228 * 120.00020 * 58.04382 * 9 3 2 12 12 C 1.45202 * 116.99893 * 185.13637 * 11 9 3 13 13 C 1.53001 * 109.47101 * 184.91983 * 12 11 9 14 14 C 1.50698 * 115.54983 * 306.28349 * 13 12 11 15 15 H 1.08000 * 120.00505 * 144.10141 * 14 13 12 16 16 C 1.37875 * 120.00120 * 324.10097 * 14 13 12 17 17 N 1.31519 * 119.99818 * 3.29409 * 16 14 13 18 18 Si 1.86802 * 120.00239 * 183.29133 * 16 14 13 19 19 H 1.48493 * 109.47337 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46960 * 120.00383 * 18 16 14 21 21 H 1.48505 * 109.47217 * 239.99915 * 18 16 14 22 22 C 1.53001 * 117.50190 * 160.61147 * 13 12 11 23 23 C 1.53001 * 117.50066 * 91.94818 * 13 12 11 24 24 H 1.08003 * 119.99695 * 174.46721 * 1 2 3 25 25 H 1.07998 * 120.00423 * 354.47557 * 1 2 3 26 26 H 1.08000 * 120.00299 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47242 * 186.21805 * 4 3 2 28 28 H 1.09005 * 109.46759 * 306.20841 * 4 3 2 29 29 H 1.08992 * 109.47294 * 66.20618 * 4 3 2 30 30 H 1.08997 * 109.47303 * 66.16443 * 5 3 2 31 31 H 1.09000 * 109.46911 * 306.16565 * 5 3 2 32 32 H 1.08999 * 109.47511 * 55.31600 * 6 5 3 33 33 H 1.09003 * 109.46919 * 295.31085 * 6 5 3 34 34 H 1.08996 * 109.47348 * 179.97438 * 8 7 6 35 35 H 1.08998 * 109.47298 * 300.00099 * 8 7 6 36 36 H 1.08999 * 109.46922 * 60.00285 * 8 7 6 37 37 H 1.09002 * 109.47015 * 304.91265 * 12 11 9 38 38 H 1.08993 * 109.47271 * 64.92027 * 12 11 9 39 39 H 0.96999 * 120.00006 * 185.00474 * 17 16 14 40 40 H 1.08997 * 117.49326 * 0.02562 * 22 13 12 41 41 H 1.08996 * 117.50096 * 145.01731 * 22 13 12 42 42 H 1.08998 * 117.50118 * 214.97614 * 23 13 12 43 43 H 1.09001 * 117.49627 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.8548 1.4372 -1.3028 5 6 1.0732 2.4658 0.1151 6 6 1.8211 3.7915 -0.0392 7 8 0.8836 4.8700 -0.0410 8 6 1.4819 6.1601 -0.1802 9 6 3.0129 1.3371 1.1699 10 8 2.9307 2.2199 1.9907 11 8 3.9498 0.3848 1.3001 12 6 4.7541 0.4121 2.5087 13 6 5.8391 -0.6632 2.4237 14 6 5.3503 -2.0580 2.1295 15 1 5.9402 -2.7178 1.5106 16 6 4.1498 -2.4920 2.6506 17 7 3.4005 -1.6681 3.3503 18 14 3.5875 -4.2499 2.3626 19 1 4.6024 -4.9675 1.5503 20 1 3.4221 -4.9369 3.6688 21 1 2.2904 -4.2426 1.6395 22 6 7.0504 -0.5193 3.3473 23 6 7.1958 -0.2539 1.8468 24 1 -0.5400 -0.9310 -0.0902 25 1 -0.5401 0.9309 0.0900 26 1 1.8501 -0.9353 0.0004 27 1 3.4847 2.3256 -1.2569 28 1 3.4804 0.5550 -1.4389 29 1 2.1632 1.5249 -2.1407 30 1 0.5877 2.4338 1.0904 31 1 0.3203 2.3800 -0.6685 32 1 2.3743 3.7895 -0.9784 33 1 2.5159 3.9155 0.7915 34 1 0.7044 6.9240 -0.1728 35 1 2.1694 6.3331 0.6478 36 1 2.0283 6.2075 -1.1221 37 1 5.2208 1.3917 2.6124 38 1 4.1183 0.2192 3.3727 39 1 2.5923 -1.9921 3.7778 40 1 7.0740 0.3413 4.0158 41 1 7.4938 -1.4335 3.7420 42 1 7.7349 -0.9936 1.2549 43 1 7.3152 0.7814 1.5274 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783096523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:44 Heat of formation + Delta-G solvation = -86.704116 kcal Electronic energy + Delta-G solvation = -23502.412761 eV Core-core repulsion = 20128.693028 eV Total energy + Delta-G solvation = -3373.719733 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.14000 -37.97380 -36.95560 -36.07973 -34.95228 -32.18564 -31.25380 -29.22297 -26.65375 -26.29027 -25.45968 -24.48066 -22.45716 -21.28593 -20.64788 -19.17443 -18.36135 -16.70433 -16.66229 -16.37968 -15.84150 -15.56574 -15.36329 -14.76726 -14.51227 -14.11959 -13.83391 -13.66097 -13.25027 -12.97520 -12.51343 -12.28181 -12.00771 -11.70952 -11.62885 -11.50166 -11.29589 -11.08680 -11.03561 -10.81740 -10.75218 -10.54014 -10.45446 -10.35518 -9.97074 -9.63455 -9.46730 -9.32128 -9.02464 -8.91002 -8.75807 -8.25027 -6.01336 -4.13031 2.40799 3.08557 3.23682 3.33025 3.36590 3.64528 3.77686 4.34153 4.79817 4.92879 4.99717 5.11259 5.26073 5.27158 5.37384 5.44931 5.52635 5.58704 5.60081 5.63657 5.70176 5.86354 5.88729 6.04391 6.11495 6.15301 6.20828 6.26612 6.38305 6.48039 6.61461 6.63130 6.80225 6.88227 6.95809 6.99018 7.21474 7.22350 7.45612 7.62364 7.89326 8.31103 8.70609 8.86494 9.49124 10.95217 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018120 B = 0.005654 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.915828 B = 4950.629238 C = 5911.550841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.128 4.128 3 C -0.021 4.021 4 C -0.138 4.138 5 C -0.098 4.098 6 C 0.051 3.949 7 O -0.394 6.394 8 C 0.033 3.967 9 C 0.468 3.532 10 O -0.527 6.527 11 O -0.312 6.312 12 C 0.120 3.880 13 C 0.046 3.954 14 C -0.478 4.478 15 H 0.062 0.938 16 C 0.075 3.925 17 N -0.882 5.882 18 Si 0.895 3.105 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.282 1.282 22 C -0.196 4.196 23 C -0.210 4.210 24 H 0.100 0.900 25 H 0.103 0.897 26 H 0.128 0.872 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.038 0.962 37 H 0.020 0.980 38 H 0.115 0.885 39 H 0.261 0.739 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.836 8.213 -8.041 12.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.146 4.146 3 C -0.022 4.022 4 C -0.195 4.195 5 C -0.135 4.135 6 C -0.025 4.025 7 O -0.313 6.313 8 C -0.063 4.063 9 C 0.311 3.689 10 O -0.419 6.419 11 O -0.225 6.225 12 C 0.047 3.953 13 C 0.045 3.955 14 C -0.515 4.515 15 H 0.080 0.920 16 C -0.128 4.128 17 N -0.520 5.520 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.208 1.208 22 C -0.234 4.234 23 C -0.247 4.247 24 H 0.118 0.882 25 H 0.121 0.879 26 H 0.145 0.855 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.038 0.962 38 H 0.133 0.867 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.209 8.426 -7.722 12.180 hybrid contribution 0.134 -0.784 0.164 0.812 sum -4.075 7.642 -7.558 11.495 Atomic orbital electron populations 1.23962 0.95868 1.02173 1.01355 1.22749 0.95750 0.96817 0.99305 1.19503 0.93750 0.95263 0.93690 1.21855 0.99990 1.03314 0.94377 1.21461 0.97328 0.90800 1.03923 1.22882 0.92176 0.86395 1.01040 1.87805 1.34258 1.14518 1.94763 1.22684 0.98813 0.85128 0.99708 1.23100 0.80292 0.79703 0.85810 1.90539 1.70837 1.37006 1.43491 1.86466 1.43587 1.48645 1.43802 1.22874 0.92053 0.94198 0.86202 1.18946 0.84074 0.95018 0.97432 1.20486 1.04155 0.95641 1.31219 0.92022 1.24922 0.95497 0.97475 0.94863 1.69806 1.14927 1.33588 1.33650 0.86493 0.78687 0.84557 0.78040 1.19722 1.20965 1.20848 1.22985 1.07639 1.01013 0.91743 1.22950 1.06076 0.99518 0.96136 0.88197 0.87919 0.85459 0.92032 0.90386 0.91286 0.90044 0.89917 0.93417 0.91096 0.89947 0.94066 0.94386 0.96191 0.86707 0.92851 0.91475 0.89803 0.90333 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.80 13.71 29.01 0.40 -2.40 16 2 C -0.13 -2.12 8.65 -36.03 -0.31 -2.43 16 3 C -0.02 -0.34 0.72 -156.81 -0.11 -0.45 16 4 C -0.14 -1.90 7.67 37.16 0.28 -1.62 16 5 C -0.10 -1.47 3.01 -26.73 -0.08 -1.55 16 6 C 0.05 0.76 5.27 37.16 0.20 0.95 16 7 O -0.39 -5.76 10.70 -35.23 -0.38 -6.14 16 8 C 0.03 0.37 11.01 101.05 1.11 1.48 16 9 C 0.47 9.81 6.31 36.01 0.23 10.04 16 10 O -0.53 -11.98 13.64 -18.75 -0.26 -12.23 16 11 O -0.31 -7.32 9.59 -39.25 -0.38 -7.70 16 12 C 0.12 2.95 4.45 37.16 0.17 3.11 16 13 C 0.05 1.12 2.20 -155.66 -0.34 0.78 16 14 C -0.48 -12.65 8.78 -34.44 -0.30 -12.96 16 15 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 16 C 0.07 1.97 5.34 -17.82 -0.10 1.87 16 17 N -0.88 -23.84 10.24 55.43 0.57 -23.28 16 18 Si 0.89 20.49 29.54 -169.99 -5.02 15.46 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 C -0.20 -4.31 9.96 -26.69 -0.27 -4.58 16 23 C -0.21 -4.50 9.92 -26.69 -0.26 -4.76 16 24 H 0.10 1.29 8.06 -52.48 -0.42 0.87 16 25 H 0.10 1.33 5.70 -52.49 -0.30 1.03 16 26 H 0.13 2.33 8.06 -52.49 -0.42 1.90 16 27 H 0.06 0.80 6.61 -51.93 -0.34 0.46 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.36 7.76 -51.93 -0.40 0.96 16 31 H 0.08 1.08 6.97 -51.93 -0.36 0.71 16 32 H 0.05 0.62 6.20 -51.93 -0.32 0.30 16 33 H 0.07 1.21 6.09 -51.93 -0.32 0.89 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.02 0.47 7.91 -51.93 -0.41 0.06 16 38 H 0.12 3.12 5.96 -51.93 -0.31 2.82 16 39 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 42 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 350.73 15.07 5.29 5.29 Total: -1.00 -28.93 350.73 -6.53 -35.46 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.96 Total: 5.65 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 0.61 Total: -12.51 kcal Atomic # 7 Polarization: -23.84 SS G_CDS: 0.57 Total: -23.28 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -1.01 Total: -26.07 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.93 -6.53 -35.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783096523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.246 kcal (2) G-P(sol) polarization free energy of solvation -28.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds