Wall clock time and date at job start Tue Mar 31 2020 06:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00395 * 2 1 4 4 H 1.48493 * 109.47063 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47024 * 300.00494 * 3 2 1 6 6 H 1.48498 * 109.46698 * 60.00042 * 3 2 1 7 7 C 1.37877 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00305 * 175.05143 * 7 2 1 9 9 C 1.50701 * 120.00115 * 355.32532 * 7 2 1 10 10 C 1.53000 * 115.55147 * 279.20565 * 9 7 2 11 11 N 1.46506 * 109.46737 * 294.81552 * 10 9 7 12 12 C 1.34770 * 119.99903 * 184.72157 * 11 10 9 13 13 S 1.71200 * 120.00088 * 0.02562 * 12 11 10 14 14 N 1.34783 * 120.00047 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99954 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47274 * 275.00027 * 15 14 12 17 17 C 1.53004 * 109.46945 * 180.02562 * 16 15 14 18 18 C 1.52991 * 109.47131 * 60.00079 * 17 16 15 19 19 C 1.52999 * 109.47456 * 299.99987 * 18 17 16 20 20 C 1.52995 * 109.47112 * 59.99905 * 19 18 17 21 21 C 1.52998 * 117.49878 * 133.49205 * 9 7 2 22 22 C 1.53003 * 60.00202 * 252.51272 * 21 9 7 23 23 H 0.97006 * 119.99608 * 4.99587 * 1 2 3 24 24 H 1.08993 * 109.47036 * 54.81537 * 10 9 7 25 25 H 1.09006 * 109.47243 * 174.82339 * 10 9 7 26 26 H 0.96996 * 120.00010 * 4.72788 * 11 10 9 27 27 H 0.96996 * 119.99867 * 0.02562 * 14 12 11 28 28 H 1.09003 * 109.47278 * 35.00106 * 15 14 12 29 29 H 1.08995 * 109.47044 * 300.00506 * 16 15 14 30 30 H 1.09002 * 109.46925 * 60.00250 * 16 15 14 31 31 H 1.08998 * 109.46907 * 299.99669 * 17 16 15 32 32 H 1.09008 * 109.46513 * 180.02562 * 17 16 15 33 33 H 1.09005 * 109.47247 * 179.97438 * 18 17 16 34 34 H 1.09004 * 109.46903 * 60.00213 * 18 17 16 35 35 H 1.09003 * 109.46723 * 300.00022 * 19 18 17 36 36 H 1.08995 * 109.47521 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.47141 * 180.02562 * 20 19 18 38 38 H 1.08995 * 109.47451 * 60.00279 * 20 19 18 39 39 H 1.09004 * 117.50335 * 0.02562 * 21 9 7 40 40 H 1.09003 * 117.49987 * 145.02530 * 21 9 7 41 41 H 1.08999 * 117.49715 * 252.51392 * 22 21 9 42 42 H 1.08997 * 117.51799 * 107.48054 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0815 -1.1959 -0.0812 9 6 1.2547 -2.4971 0.1052 10 6 0.8316 -2.9021 1.5187 11 7 2.0238 -3.1609 2.3299 12 6 1.8947 -3.6262 3.5881 13 16 0.3376 -3.9153 4.2383 14 7 2.9915 -3.8638 4.3346 15 6 2.8512 -4.3700 5.7022 16 6 2.6327 -3.1973 6.6603 17 6 2.4868 -3.7261 8.0886 18 6 3.7578 -4.4793 8.4859 19 6 3.9763 -5.6520 7.5279 20 6 4.1223 -5.1233 6.0996 21 6 1.6413 -3.6153 -0.8647 22 6 0.3182 -2.8687 -1.0462 23 1 -0.4850 0.8369 -0.0732 24 1 0.2532 -2.0960 1.9698 25 1 0.2218 -3.8044 1.4709 26 1 2.9060 -2.9974 1.9614 27 1 3.8737 -3.6996 3.9664 28 1 1.9971 -5.0453 5.7538 29 1 3.4867 -2.5221 6.6086 30 1 1.7274 -2.6605 6.3769 31 1 1.6329 -4.4015 8.1405 32 1 2.3307 -2.8905 8.7711 33 1 3.6541 -4.8556 9.5037 34 1 4.6117 -3.8037 8.4340 35 1 3.1224 -6.3275 7.5798 36 1 4.8816 -6.1889 7.8112 37 1 4.2775 -5.9588 5.4170 38 1 4.9761 -4.4478 6.0476 39 1 2.4382 -3.4088 -1.5792 40 1 1.5944 -4.6400 -0.4960 41 1 -0.5990 -3.4021 -0.7968 42 1 0.2441 -2.1706 -1.8801 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797409063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:29 Heat of formation + Delta-G solvation = 10.411266 kcal Electronic energy + Delta-G solvation = -20211.616663 eV Core-core repulsion = 17317.153791 eV Total energy + Delta-G solvation = -2894.462872 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.46180 -37.87340 -36.32317 -33.84293 -32.07925 -30.89756 -29.53295 -26.38385 -25.23916 -23.38036 -22.55384 -22.22145 -21.19268 -20.03021 -19.54451 -17.71727 -17.09332 -15.99634 -15.34435 -14.89546 -14.70085 -14.62044 -14.31121 -14.17141 -13.97541 -13.41625 -12.97880 -12.86443 -12.57903 -12.31517 -11.72932 -11.63668 -11.30644 -11.19844 -11.08245 -11.00170 -10.75882 -10.64144 -10.57361 -10.38617 -10.32952 -10.22304 -9.63519 -9.12686 -8.64770 -8.49948 -8.28238 -7.29488 -6.85201 -6.16232 -4.27504 1.99206 2.50571 3.07975 3.18657 3.28096 3.28822 4.05816 4.27562 4.54453 4.60117 4.77611 5.01052 5.11569 5.13913 5.22078 5.30316 5.36931 5.40379 5.48659 5.61712 5.85002 5.86892 5.91831 5.97412 6.00166 6.11644 6.21838 6.27055 6.36848 6.40098 6.44786 6.50275 6.61553 6.70736 7.02713 7.11550 7.29647 7.35417 7.48211 7.71835 7.90964 8.22129 8.73741 9.40763 10.90812 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.020795 B = 0.004285 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.180321 B = 6532.692712 C = 7046.183485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.077 3.923 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.509 4.509 8 H 0.059 0.941 9 C 0.021 3.979 10 C 0.165 3.835 11 N -0.647 5.647 12 C 0.563 3.437 13 S -0.676 6.676 14 N -0.697 5.697 15 C 0.151 3.849 16 C -0.129 4.129 17 C -0.114 4.114 18 C -0.122 4.122 19 C -0.113 4.113 20 C -0.127 4.127 21 C -0.212 4.212 22 C -0.140 4.140 23 H 0.263 0.737 24 H 0.089 0.911 25 H 0.063 0.937 26 H 0.399 0.601 27 H 0.392 0.608 28 H 0.113 0.887 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.749 -8.410 11.516 17.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.129 4.129 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.546 4.546 8 H 0.077 0.923 9 C 0.020 3.980 10 C 0.043 3.957 11 N -0.270 5.270 12 C 0.200 3.800 13 S -0.552 6.552 14 N -0.328 5.328 15 C 0.046 3.954 16 C -0.169 4.169 17 C -0.152 4.152 18 C -0.159 4.159 19 C -0.151 4.151 20 C -0.165 4.165 21 C -0.249 4.249 22 C -0.178 4.178 23 H 0.073 0.927 24 H 0.107 0.893 25 H 0.081 0.919 26 H 0.235 0.765 27 H 0.228 0.772 28 H 0.131 0.869 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.404 -8.465 11.966 16.896 hybrid contribution 2.054 1.393 -0.851 2.623 sum 10.458 -7.072 11.116 16.821 Atomic orbital electron populations 1.69982 1.05830 1.27016 1.47431 1.24981 0.94816 0.98956 0.94115 0.86592 0.80025 0.83901 0.77825 1.19849 1.20857 1.20836 1.20360 0.92550 0.88582 1.53140 0.92304 1.19092 0.99653 0.93112 0.86163 1.21481 0.83427 1.00441 0.90361 1.45341 1.12883 1.58656 1.10129 1.22153 0.92775 0.81355 0.83744 1.93196 1.09048 1.75251 1.77724 1.44978 1.06186 1.66581 1.15103 1.21300 0.99675 0.96360 0.78090 1.21913 1.03041 0.97617 0.94280 1.21456 0.97848 1.00013 0.95874 1.21588 0.98348 0.97281 0.98716 1.21445 1.02059 0.97924 0.93671 1.21827 0.97146 1.00013 0.97556 1.23012 1.00113 0.95661 1.06124 1.22489 0.91393 1.01493 1.02443 0.92684 0.89259 0.91911 0.76510 0.77206 0.86903 0.92571 0.89853 0.91335 0.91872 0.91994 0.92158 0.91395 0.91721 0.91418 0.91720 0.90372 0.91614 0.91395 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.57 12.85 55.43 0.71 -22.85 16 2 C 0.08 1.98 5.44 -17.82 -0.10 1.88 16 3 Si 0.89 20.14 29.54 -169.99 -5.02 15.11 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -12.61 8.58 -34.44 -0.30 -12.91 16 8 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 9 C 0.02 0.47 1.40 -155.66 -0.22 0.25 16 10 C 0.17 3.59 4.99 -4.04 -0.02 3.57 16 11 N -0.65 -11.73 5.48 -62.03 -0.34 -12.07 16 12 C 0.56 9.84 7.95 -86.92 -0.69 9.15 16 13 S -0.68 -14.38 26.55 -107.50 -2.85 -17.24 16 14 N -0.70 -9.12 5.08 -55.52 -0.28 -9.40 16 15 C 0.15 1.79 2.22 -67.93 -0.15 1.64 16 16 C -0.13 -1.56 5.44 -26.73 -0.15 -1.70 16 17 C -0.11 -1.13 5.92 -26.73 -0.16 -1.29 16 18 C -0.12 -0.98 5.92 -26.74 -0.16 -1.14 16 19 C -0.11 -0.89 5.92 -26.73 -0.16 -1.05 16 20 C -0.13 -1.12 5.39 -26.73 -0.14 -1.26 16 21 C -0.21 -4.24 9.96 -26.73 -0.27 -4.51 16 22 C -0.14 -3.11 9.39 -26.73 -0.25 -3.36 16 23 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 24 H 0.09 2.27 8.13 -51.93 -0.42 1.85 16 25 H 0.06 1.39 7.75 -51.93 -0.40 0.98 16 26 H 0.40 6.52 8.35 -40.82 -0.34 6.18 16 27 H 0.39 4.10 8.62 -40.82 -0.35 3.75 16 28 H 0.11 1.62 6.82 -51.93 -0.35 1.26 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.28 7.48 -51.93 -0.39 0.89 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.09 2.05 8.14 -51.93 -0.42 1.62 16 LS Contribution 348.48 15.07 5.25 5.25 Total: -1.00 -28.93 348.48 -12.59 -41.52 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -7.30 Total: 10.40 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -2.75 Total: -10.72 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.09 Total: -44.33 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: -14.38 SS G_CDS: -2.85 Total: -17.24 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.93 -12.59 -41.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797409063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.932 kcal (2) G-P(sol) polarization free energy of solvation -28.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds