Wall clock time and date at job start Tue Mar 31 2020 06:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00395 * 2 1 4 4 H 1.48493 * 109.47063 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47024 * 300.00494 * 3 2 1 6 6 H 1.48498 * 109.46698 * 60.00042 * 3 2 1 7 7 C 1.37877 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00305 * 175.05143 * 7 2 1 9 9 C 1.50701 * 120.00115 * 355.32532 * 7 2 1 10 10 C 1.53000 * 115.55147 * 279.20565 * 9 7 2 11 11 N 1.46506 * 109.46737 * 294.81552 * 10 9 7 12 12 C 1.34770 * 119.99903 * 184.72157 * 11 10 9 13 13 S 1.71200 * 120.00088 * 0.02562 * 12 11 10 14 14 N 1.34783 * 120.00047 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99954 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47274 * 275.00027 * 15 14 12 17 17 C 1.53004 * 109.46945 * 180.02562 * 16 15 14 18 18 C 1.52991 * 109.47131 * 60.00079 * 17 16 15 19 19 C 1.52999 * 109.47456 * 299.99987 * 18 17 16 20 20 C 1.52995 * 109.47112 * 59.99905 * 19 18 17 21 21 C 1.52998 * 117.49878 * 133.49205 * 9 7 2 22 22 C 1.53003 * 60.00202 * 252.51272 * 21 9 7 23 23 H 0.97006 * 119.99608 * 4.99587 * 1 2 3 24 24 H 1.08993 * 109.47036 * 54.81537 * 10 9 7 25 25 H 1.09006 * 109.47243 * 174.82339 * 10 9 7 26 26 H 0.96996 * 120.00010 * 4.72788 * 11 10 9 27 27 H 0.96996 * 119.99867 * 0.02562 * 14 12 11 28 28 H 1.09003 * 109.47278 * 35.00106 * 15 14 12 29 29 H 1.08995 * 109.47044 * 300.00506 * 16 15 14 30 30 H 1.09002 * 109.46925 * 60.00250 * 16 15 14 31 31 H 1.08998 * 109.46907 * 299.99669 * 17 16 15 32 32 H 1.09008 * 109.46513 * 180.02562 * 17 16 15 33 33 H 1.09005 * 109.47247 * 179.97438 * 18 17 16 34 34 H 1.09004 * 109.46903 * 60.00213 * 18 17 16 35 35 H 1.09003 * 109.46723 * 300.00022 * 19 18 17 36 36 H 1.08995 * 109.47521 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.47141 * 180.02562 * 20 19 18 38 38 H 1.08995 * 109.47451 * 60.00279 * 20 19 18 39 39 H 1.09004 * 117.50335 * 0.02562 * 21 9 7 40 40 H 1.09003 * 117.49987 * 145.02530 * 21 9 7 41 41 H 1.08999 * 117.49715 * 252.51392 * 22 21 9 42 42 H 1.08997 * 117.51799 * 107.48054 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0815 -1.1959 -0.0812 9 6 1.2547 -2.4971 0.1052 10 6 0.8316 -2.9021 1.5187 11 7 2.0238 -3.1609 2.3299 12 6 1.8947 -3.6262 3.5881 13 16 0.3376 -3.9153 4.2383 14 7 2.9915 -3.8638 4.3346 15 6 2.8512 -4.3700 5.7022 16 6 2.6327 -3.1973 6.6603 17 6 2.4868 -3.7261 8.0886 18 6 3.7578 -4.4793 8.4859 19 6 3.9763 -5.6520 7.5279 20 6 4.1223 -5.1233 6.0996 21 6 1.6413 -3.6153 -0.8647 22 6 0.3182 -2.8687 -1.0462 23 1 -0.4850 0.8369 -0.0732 24 1 0.2532 -2.0960 1.9698 25 1 0.2218 -3.8044 1.4709 26 1 2.9060 -2.9974 1.9614 27 1 3.8737 -3.6996 3.9664 28 1 1.9971 -5.0453 5.7538 29 1 3.4867 -2.5221 6.6086 30 1 1.7274 -2.6605 6.3769 31 1 1.6329 -4.4015 8.1405 32 1 2.3307 -2.8905 8.7711 33 1 3.6541 -4.8556 9.5037 34 1 4.6117 -3.8037 8.4340 35 1 3.1224 -6.3275 7.5798 36 1 4.8816 -6.1889 7.8112 37 1 4.2775 -5.9588 5.4170 38 1 4.9761 -4.4478 6.0476 39 1 2.4382 -3.4088 -1.5792 40 1 1.5944 -4.6400 -0.4960 41 1 -0.5990 -3.4021 -0.7968 42 1 0.2441 -2.1706 -1.8801 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797409063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:28 Heat of formation + Delta-G solvation = -4.807329 kcal Electronic energy + Delta-G solvation = -20212.276591 eV Core-core repulsion = 17317.153791 eV Total energy + Delta-G solvation = -2895.122800 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.60697 -39.29298 -37.75754 -35.15113 -34.01777 -31.68423 -30.58253 -28.07832 -27.04179 -24.74344 -23.45324 -23.20386 -22.89190 -21.33418 -20.85423 -19.15422 -18.49738 -17.65269 -16.71126 -16.52770 -16.07416 -15.91847 -15.68384 -15.22975 -14.92282 -14.84277 -14.58681 -13.93227 -13.71132 -13.46522 -13.12788 -13.04849 -12.92420 -12.74364 -12.36272 -12.25449 -12.10798 -12.05259 -12.01258 -11.50228 -11.41538 -11.27819 -11.11488 -10.91859 -10.49493 -10.15195 -9.86048 -8.95742 -8.55039 -8.12486 -6.27507 0.51124 1.00740 1.38628 1.42994 1.50841 1.66954 2.38983 2.70953 3.16260 3.47557 3.72530 3.82360 4.02744 4.17104 4.23826 4.32705 4.49103 4.50862 4.55870 4.58688 4.63458 4.68309 4.73895 4.84205 4.92375 4.97406 5.00760 5.15018 5.22397 5.25697 5.26875 5.29675 5.38726 5.43308 5.49679 5.55312 5.62441 5.74200 5.76789 6.06209 6.31630 6.55590 6.80647 7.43284 8.94451 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.020795 B = 0.004285 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.180321 B = 6532.692712 C = 7046.183485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.028 3.972 3 Si 0.946 3.054 4 H -0.260 1.260 5 H -0.284 1.284 6 H -0.291 1.291 7 C -0.508 4.508 8 H 0.065 0.935 9 C 0.002 3.998 10 C 0.190 3.810 11 N -0.643 5.643 12 C 0.581 3.419 13 S -0.751 6.751 14 N -0.669 5.669 15 C 0.148 3.852 16 C -0.125 4.125 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.112 4.112 20 C -0.118 4.118 21 C -0.176 4.176 22 C -0.154 4.154 23 H 0.259 0.741 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.411 0.589 27 H 0.413 0.587 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.154 -9.294 12.167 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.173 4.173 3 Si 0.773 3.227 4 H -0.184 1.184 5 H -0.210 1.210 6 H -0.217 1.217 7 C -0.546 4.546 8 H 0.083 0.917 9 C 0.001 3.999 10 C 0.066 3.934 11 N -0.268 5.268 12 C 0.215 3.785 13 S -0.628 6.628 14 N -0.299 5.299 15 C 0.044 3.956 16 C -0.164 4.164 17 C -0.150 4.150 18 C -0.154 4.154 19 C -0.150 4.150 20 C -0.156 4.156 21 C -0.213 4.213 22 C -0.192 4.192 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.250 0.750 27 H 0.252 0.748 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.888 -9.366 12.638 19.717 hybrid contribution 1.042 1.637 -1.013 2.188 sum 12.930 -7.729 11.625 19.028 Atomic orbital electron populations 1.70107 1.07236 1.27339 1.49240 1.25672 0.95385 1.01962 0.94297 0.85690 0.79564 0.80383 0.77100 1.18405 1.21017 1.21721 1.20673 0.92910 0.89402 1.51622 0.91725 1.19099 1.00446 0.93771 0.86627 1.20903 0.84030 0.98425 0.90071 1.44977 1.12467 1.59217 1.10104 1.21661 0.92455 0.80839 0.83535 1.93376 1.12781 1.77904 1.78743 1.45027 1.05839 1.63988 1.15087 1.21455 1.00942 0.96157 0.77047 1.21840 1.01470 0.97480 0.95643 1.21442 0.98855 1.00184 0.94513 1.21565 0.97163 0.97232 0.99456 1.21473 1.02882 0.97827 0.92822 1.21807 0.95406 1.00085 0.98328 1.22994 0.98393 0.95807 1.04134 1.22418 0.92795 1.02155 1.01862 0.93141 0.93661 0.92568 0.74990 0.74844 0.89430 0.91437 0.93832 0.92599 0.91478 0.90684 0.91167 0.92100 0.89488 0.90658 0.89896 0.89472 0.89383 0.91133 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.18 12.85 21.45 0.28 -49.91 16 2 C 0.03 1.47 5.44 84.65 0.46 1.93 16 3 Si 0.95 41.23 29.54 68.60 2.03 43.25 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.51 -24.80 8.58 25.60 0.22 -24.58 16 8 H 0.06 3.02 7.82 -2.91 -0.02 3.00 16 9 C 0.00 0.07 1.40 -52.93 -0.07 -0.01 16 10 C 0.19 8.32 4.99 86.38 0.43 8.75 16 11 N -0.64 -22.75 5.48 -350.16 -1.92 -24.67 16 12 C 0.58 20.07 7.95 179.05 1.42 21.49 16 13 S -0.75 -33.10 26.55 -56.49 -1.50 -34.60 16 14 N -0.67 -16.29 5.08 -329.56 -1.67 -17.97 16 15 C 0.15 3.32 2.22 44.99 0.10 3.42 16 16 C -0.13 -2.92 5.44 30.60 0.17 -2.76 16 17 C -0.11 -2.10 5.92 30.59 0.18 -1.92 16 18 C -0.12 -1.54 5.92 30.59 0.18 -1.35 16 19 C -0.11 -1.41 5.92 30.59 0.18 -1.22 16 20 C -0.12 -1.69 5.39 30.59 0.16 -1.52 16 21 C -0.18 -6.68 9.96 30.59 0.30 -6.38 16 22 C -0.15 -6.83 9.39 30.60 0.29 -6.55 16 23 H 0.26 13.99 8.32 -92.70 -0.77 13.22 16 24 H 0.05 2.39 8.13 -2.39 -0.02 2.37 16 25 H 0.06 2.52 7.75 -2.38 -0.02 2.50 16 26 H 0.41 12.56 8.35 -92.71 -0.77 11.79 16 27 H 0.41 7.25 8.62 -92.71 -0.80 6.45 16 28 H 0.09 2.51 6.82 -2.39 -0.02 2.50 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.04 1.37 7.48 -2.39 -0.02 1.36 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 40 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 41 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 42 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -64.76 348.48 0.66 -64.09 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: -0.57 Total: 30.49 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 4.03 Total: -10.70 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -3.32 Total: -92.54 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 16 Polarization: -33.10 SS G_CDS: -1.50 Total: -34.60 kcal Total: -64.76 0.66 -64.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797409063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.286 kcal (2) G-P(sol) polarization free energy of solvation -64.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds