Wall clock time and date at job start Tue Mar 31 2020 07:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 5 5 C 1.50698 * 109.47592 * 59.99575 * 4 2 1 6 6 H 1.08003 * 120.00057 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00356 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99989 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00117 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46744 * 90.00434 * 9 7 5 11 11 H 1.48500 * 109.47304 * 210.00023 * 9 7 5 12 12 H 1.48498 * 109.47341 * 330.00626 * 9 7 5 13 13 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 14 14 O 1.45199 * 109.47075 * 300.00189 * 13 2 1 15 15 C 1.34230 * 116.99614 * 179.97438 * 14 13 2 16 16 O 1.20824 * 120.00179 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99717 * 179.97438 * 15 14 13 18 18 H 1.09001 * 115.56640 * 325.61632 * 17 15 14 19 19 C 1.53541 * 117.52275 * 179.75154 * 17 15 14 20 20 H 1.08999 * 117.45247 * 359.95452 * 19 17 15 21 21 C 1.51776 * 116.86598 * 141.83489 * 19 17 15 22 22 C 1.53129 * 109.12726 * 89.64687 * 21 19 17 23 23 C 1.53329 * 108.38237 * 307.82718 * 22 21 19 24 24 O 1.42714 * 108.80409 * 71.94943 * 23 22 21 25 25 C 1.42013 * 115.40717 * 305.27448 * 24 23 22 26 26 H 1.09002 * 114.75743 * 165.70466 * 25 24 23 27 27 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 32 32 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 33 33 H 1.09002 * 109.47103 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47066 * 299.99881 * 4 2 1 35 35 H 0.96996 * 119.99885 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47153 * 180.02562 * 13 2 1 37 37 H 1.09001 * 109.46832 * 60.00321 * 13 2 1 38 38 H 1.08999 * 109.39578 * 329.87704 * 21 19 17 39 39 H 1.08996 * 109.82829 * 209.67823 * 21 19 17 40 40 H 1.09002 * 109.68688 * 188.10301 * 22 21 19 41 41 H 1.08997 * 109.68014 * 67.54876 * 22 21 19 42 42 H 1.08998 * 109.58149 * 312.14899 * 23 22 21 43 43 H 1.09001 * 109.58203 * 191.74025 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8713 -0.4814 -3.7320 8 7 2.6275 -1.5507 -3.8527 9 14 1.2479 0.3987 -5.2572 10 1 2.2253 1.4411 -5.6612 11 1 1.0838 -0.5805 -6.3615 12 1 -0.0607 1.0352 -4.9614 13 6 2.0401 -0.7212 1.2492 14 8 1.5560 -0.0368 2.4348 15 6 1.9163 -0.5472 3.6228 16 8 2.6134 -1.5329 3.6705 17 6 1.4522 0.1100 4.8972 18 1 1.3653 1.1960 4.8618 19 6 1.8929 -0.5246 6.2240 20 1 2.5171 -1.4167 6.1715 21 6 2.2462 0.4246 7.3544 22 6 0.9854 0.7249 8.1700 23 6 -0.1149 1.1864 7.2070 24 8 -0.5653 0.0630 6.4508 25 6 0.4477 -0.6494 5.7558 26 1 0.1455 -1.6298 5.3874 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 -0.7207 -1.2494 34 1 1.6767 -1.7488 -1.2493 35 1 2.8618 -1.8820 -4.7337 36 1 3.1301 -0.7208 1.2495 37 1 1.6767 -1.7489 1.2492 38 1 2.6398 1.3521 6.9385 39 1 2.9966 -0.0320 7.9997 40 1 1.1949 1.5132 8.8930 41 1 0.6626 -0.1760 8.6917 42 1 0.2840 1.9444 6.5329 43 1 -0.9472 1.6015 7.7753 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798879690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:00 Heat of formation + Delta-G solvation = -127.195436 kcal Electronic energy + Delta-G solvation = -22475.987488 eV Core-core repulsion = 19100.511919 eV Total energy + Delta-G solvation = -3375.475569 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.06841 -39.70165 -37.23493 -35.46729 -34.91346 -33.28721 -32.33021 -27.86097 -27.11009 -26.40184 -26.36065 -24.20351 -23.88456 -22.63288 -20.27031 -19.76021 -18.28359 -17.89419 -16.81973 -16.69140 -16.23188 -15.80192 -15.72934 -14.87891 -14.66237 -14.53548 -13.71361 -13.64785 -13.43949 -13.19462 -12.85660 -12.57981 -12.37107 -12.23008 -12.05741 -11.74608 -11.55421 -11.25909 -11.05802 -10.96543 -10.83349 -10.59650 -10.51477 -10.37037 -10.29520 -10.26261 -10.15702 -9.73694 -9.50735 -9.20527 -8.94411 -8.36705 -6.00913 -4.02037 2.14783 2.72963 3.27194 3.31545 3.38261 3.40865 3.46011 4.12691 4.26691 4.36025 4.42683 4.45763 4.56657 4.89401 4.93565 5.03234 5.20549 5.31544 5.34750 5.43400 5.49884 5.51355 5.57437 5.68927 5.71921 5.80808 5.82207 6.04741 6.19606 6.38743 6.52635 6.63391 6.71731 6.76911 6.82324 7.11134 7.12660 7.14155 7.60657 7.72567 7.94662 7.98265 8.39704 9.02302 9.61070 11.10802 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040880 B = 0.003045 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.759602 B = 9193.511615 C = 9465.305321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.059 4.059 3 C -0.126 4.126 4 C 0.035 3.965 5 C -0.509 4.509 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.079 3.921 14 O -0.344 6.344 15 C 0.490 3.510 16 O -0.513 6.513 17 C -0.198 4.198 18 H 0.136 0.864 19 C -0.149 4.149 20 H 0.127 0.873 21 C -0.094 4.094 22 C -0.158 4.158 23 C 0.051 3.949 24 O -0.339 6.339 25 C 0.084 3.916 26 H 0.151 0.849 27 H 0.039 0.961 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.260 0.740 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.373 5.311 23.308 24.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.059 4.059 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.198 1.198 13 C 0.006 3.994 14 O -0.260 6.260 15 C 0.333 3.667 16 O -0.402 6.402 17 C -0.218 4.218 18 H 0.153 0.847 19 C -0.168 4.168 20 H 0.145 0.855 21 C -0.131 4.131 22 C -0.196 4.196 23 C -0.025 4.025 24 O -0.256 6.256 25 C 0.025 3.975 26 H 0.169 0.831 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.284 4.854 23.128 23.859 hybrid contribution 0.281 0.430 -1.133 1.244 sum -3.003 5.284 21.994 22.819 Atomic orbital electron populations 1.21715 0.94765 1.00962 1.00875 1.20817 0.96211 0.96193 0.92666 1.21714 0.99981 0.95768 1.00831 1.19126 0.96357 0.95309 0.89430 1.21155 1.31200 1.12107 0.90291 0.92064 1.25017 0.95304 0.95084 0.99127 1.69968 1.37028 1.23044 1.23492 0.86611 0.79250 0.79380 0.82875 1.20739 1.21311 1.19845 1.23542 0.98911 0.95966 0.80998 1.86481 1.69066 1.55767 1.14669 1.22243 0.77311 0.81915 0.85213 1.90651 1.35701 1.25786 1.88102 1.22661 1.09014 1.01585 0.88494 0.84673 1.22874 0.99172 1.02171 0.92565 0.85483 1.20984 0.97850 0.98796 0.95497 1.22211 0.95995 1.02906 0.98456 1.22832 0.98336 0.88068 0.93311 1.87685 1.31503 1.43248 1.63131 1.22696 0.84474 0.95678 0.94674 0.83138 0.94156 0.91553 0.93752 0.93798 0.91535 0.94244 0.96365 0.96322 0.93013 0.91607 0.91560 0.90811 0.90208 0.90202 0.90328 0.92457 0.87996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.08 37.16 0.30 -2.14 16 2 C -0.06 -1.21 0.61 -154.51 -0.09 -1.30 16 3 C -0.13 -2.42 8.08 37.16 0.30 -2.12 16 4 C 0.03 0.88 4.04 -27.89 -0.11 0.76 16 5 C -0.51 -13.80 7.65 -34.44 -0.26 -14.06 16 6 H 0.06 1.60 5.68 -52.48 -0.30 1.30 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.08 1.49 4.32 37.16 0.16 1.65 16 14 O -0.34 -5.88 8.88 -39.26 -0.35 -6.23 16 15 C 0.49 7.62 7.74 36.01 0.28 7.90 16 16 O -0.51 -9.19 16.02 -18.75 -0.30 -9.49 16 17 C -0.20 -2.29 5.53 -91.79 -0.51 -2.79 16 18 H 0.14 1.40 7.28 -51.93 -0.38 1.02 16 19 C -0.15 -1.43 5.65 -91.25 -0.52 -1.94 16 20 H 0.13 1.31 7.68 -51.93 -0.40 0.91 16 21 C -0.09 -0.66 5.95 -27.29 -0.16 -0.82 16 22 C -0.16 -0.96 6.09 -26.49 -0.16 -1.12 16 23 C 0.05 0.37 6.62 37.33 0.25 0.61 16 24 O -0.34 -3.50 10.77 -35.23 -0.38 -3.87 16 25 C 0.08 0.87 6.78 -27.32 -0.19 0.69 16 26 H 0.15 1.53 8.14 -51.93 -0.42 1.11 16 27 H 0.04 0.70 7.68 -51.93 -0.40 0.30 16 28 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.34 6.62 -51.93 -0.34 0.99 16 32 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 37 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 38 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.40 7.13 -51.93 -0.37 0.03 16 43 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 344.69 15.07 5.19 5.19 Total: -1.00 -30.97 344.69 -8.07 -39.03 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -7.13 Total: -1.90 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -0.81 Total: -13.21 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: 0.74 Total: -25.91 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -1.03 Total: -19.60 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.97 -8.07 -39.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798879690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.163 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds