Wall clock time and date at job start Tue Mar 31 2020 06:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 119.99632 * 2 1 4 4 H 1.48505 * 109.46946 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47135 * 299.99389 * 3 2 1 6 6 H 1.48496 * 109.47324 * 59.99750 * 3 2 1 7 7 C 1.37875 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00270 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47215 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47288 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47288 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46969 * 180.02562 * 12 11 10 14 14 O 1.20822 * 120.00285 * 0.02562 * 13 12 11 15 15 O 1.34228 * 119.99756 * 180.02562 * 13 12 11 16 16 C 1.45199 * 117.00061 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47056 * 180.02562 * 16 15 13 18 18 C 1.53381 * 109.35307 * 295.42932 * 17 16 15 19 19 C 1.53232 * 109.18207 * 176.38021 * 18 17 16 20 20 C 1.51270 * 108.69741 * 54.54959 * 19 18 17 21 21 O 1.20757 * 120.84798 * 128.53181 * 20 19 18 22 22 C 1.51264 * 118.29993 * 308.56051 * 20 19 18 23 23 C 1.52955 * 109.41264 * 175.00013 * 17 16 15 24 24 H 0.97000 * 120.00716 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47760 * 59.99256 * 9 7 2 26 26 H 1.09003 * 109.47114 * 299.99390 * 9 7 2 27 27 H 1.09004 * 109.47121 * 60.00009 * 10 9 7 28 28 H 1.08992 * 109.47341 * 299.99634 * 10 9 7 29 29 H 1.09004 * 109.46615 * 60.00210 * 11 10 9 30 30 H 1.09003 * 109.47494 * 300.00132 * 11 10 9 31 31 H 1.09003 * 109.46688 * 60.00211 * 12 11 10 32 32 H 1.09003 * 109.46961 * 300.00459 * 12 11 10 33 33 H 1.09002 * 109.46988 * 60.00029 * 16 15 13 34 34 H 1.08996 * 109.46920 * 300.00070 * 16 15 13 35 35 H 1.08993 * 109.41526 * 55.14010 * 17 16 15 36 36 H 1.08993 * 109.73630 * 56.38240 * 18 17 16 37 37 H 1.08997 * 109.45237 * 296.20424 * 18 17 16 38 38 H 1.09002 * 109.62686 * 294.73853 * 19 18 17 39 39 H 1.09001 * 109.62522 * 174.36190 * 19 18 17 40 40 H 1.09001 * 109.62865 * 171.06249 * 22 20 19 41 41 H 1.09011 * 109.62659 * 291.43588 * 22 20 19 42 42 H 1.09007 * 109.48519 * 63.72600 * 23 17 16 43 43 H 1.08998 * 109.49626 * 303.68944 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0005 13 6 1.7212 -7.4551 0.0005 14 8 0.5130 -7.4552 0.0005 15 8 2.3924 -8.6175 0.0005 16 6 1.6017 -9.8353 0.0011 17 6 2.5338 -11.0486 0.0017 18 6 3.3362 -11.0737 -1.3053 19 6 4.3322 -12.2374 -1.2622 20 6 3.5748 -13.5134 -0.9686 21 8 3.7114 -14.4892 -1.6667 22 6 2.6414 -13.5356 0.2215 23 6 1.7038 -12.3272 0.1280 24 1 -0.4851 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8904 27 1 2.8721 -3.6043 0.8906 28 1 2.8720 -3.6043 -0.8894 29 1 0.8535 -5.0450 -0.8887 30 1 0.8540 -5.0446 0.8914 31 1 3.1020 -6.0921 0.8901 32 1 3.1008 -6.0922 -0.8899 33 1 0.9725 -9.8604 -0.8886 34 1 0.9732 -9.8600 0.8913 35 1 3.2204 -10.9776 0.8451 36 1 3.8782 -10.1354 -1.4225 37 1 2.6560 -11.2084 -2.1463 38 1 5.0687 -12.0601 -0.4784 39 1 4.8359 -12.3239 -2.2250 40 1 2.0559 -14.4550 0.2106 41 1 3.2215 -13.4820 1.1429 42 1 1.0620 -12.4320 -0.7468 43 1 1.0884 -12.2742 1.0261 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805696029.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:02 Heat of formation + Delta-G solvation = -172.968357 kcal Electronic energy + Delta-G solvation = -21157.261260 eV Core-core repulsion = 17779.800829 eV Total energy + Delta-G solvation = -3377.460432 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.69438 -40.14921 -37.69132 -36.22752 -34.99195 -32.70886 -31.80067 -31.06116 -29.82898 -26.34009 -25.10675 -23.80489 -22.69180 -21.34129 -20.57981 -20.04830 -19.64326 -17.51276 -16.79439 -16.64615 -16.18615 -16.07066 -15.88130 -15.29517 -15.01392 -14.52427 -14.42430 -14.29765 -13.68859 -13.28395 -13.03662 -12.85025 -12.66825 -12.44733 -12.18357 -11.95696 -11.78936 -11.69094 -11.52434 -11.20729 -11.17977 -11.03644 -10.71349 -10.60033 -10.55525 -10.48497 -10.36146 -9.84109 -9.67184 -9.30625 -9.02431 -8.33510 -5.98010 -4.00584 1.49422 2.26488 2.56918 3.31703 3.39089 3.42936 3.61428 4.08058 4.15427 4.17538 4.46224 4.47371 4.69980 4.72115 4.79743 4.82173 4.97122 5.01578 5.11187 5.22436 5.24630 5.29373 5.32965 5.37623 5.39416 5.42773 5.54223 5.68689 5.77811 5.79715 6.03414 6.17294 6.36991 6.45563 6.74576 6.92751 7.02876 7.14353 7.70786 7.79160 7.85208 8.02769 8.44521 9.07234 9.63381 11.13314 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.053123 B = 0.002063 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.950241 B =13567.396503 C =13910.365790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.112 4.112 13 C 0.460 3.540 14 O -0.505 6.505 15 O -0.361 6.361 16 C 0.069 3.931 17 C -0.093 4.093 18 C -0.110 4.110 19 C -0.170 4.170 20 C 0.360 3.640 21 O -0.460 6.460 22 C -0.168 4.168 23 C -0.108 4.108 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.272 -26.552 0.980 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.149 4.149 13 C 0.303 3.697 14 O -0.392 6.392 15 O -0.278 6.278 16 C -0.005 4.005 17 C -0.111 4.111 18 C -0.147 4.147 19 C -0.208 4.208 20 C 0.236 3.764 21 O -0.333 6.333 22 C -0.205 4.205 23 C -0.146 4.146 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.091 0.909 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.813 -26.992 0.602 27.845 hybrid contribution 0.231 0.957 0.094 0.989 sum 7.044 -26.035 0.696 26.980 Atomic orbital electron populations 1.69977 1.06055 1.26448 1.50967 1.25047 0.94855 0.99293 0.95438 0.86546 0.80088 0.83864 0.77551 1.19751 1.21050 1.21055 1.21309 0.93054 0.91124 1.50354 0.92628 1.19106 0.94045 0.91266 0.97370 1.21649 0.99141 0.93556 1.00408 1.21580 0.97100 0.92732 1.03222 1.21610 0.99923 0.87909 1.05474 1.24208 0.87604 0.85899 0.71997 1.90677 1.15753 1.87865 1.44931 1.86496 1.41933 1.14931 1.84456 1.23009 0.93281 0.81311 1.02898 1.21344 0.97493 0.92499 0.99764 1.21657 0.97614 0.98302 0.97146 1.22323 0.99429 0.94338 1.04682 1.24959 0.79561 0.88116 0.83767 1.90424 1.58596 1.37142 1.47155 1.22288 0.98797 1.00533 0.98925 1.21484 0.97473 0.91880 1.03751 0.93076 0.96547 0.96540 0.93204 0.93196 0.91568 0.91558 0.87884 0.87897 0.91107 0.90978 0.89145 0.89406 0.91326 0.88112 0.89176 0.89069 0.88067 0.90888 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.17 5.15 -26.73 -0.14 -2.31 16 11 C -0.11 -1.82 4.50 -26.73 -0.12 -1.94 16 12 C -0.11 -1.40 5.81 -27.88 -0.16 -1.56 16 13 C 0.46 6.10 7.96 36.01 0.29 6.39 16 14 O -0.51 -8.37 15.73 -18.75 -0.29 -8.66 16 15 O -0.36 -3.86 9.69 -39.25 -0.38 -4.24 16 16 C 0.07 0.58 4.84 37.16 0.18 0.76 16 17 C -0.09 -0.52 2.33 -90.45 -0.21 -0.73 16 18 C -0.11 -0.64 5.19 -26.41 -0.14 -0.78 16 19 C -0.17 -0.93 6.15 -27.48 -0.17 -1.10 16 20 C 0.36 2.60 6.72 -28.48 -0.19 2.41 16 21 O -0.46 -5.17 17.89 6.00 0.11 -5.06 16 22 C -0.17 -0.79 6.17 -27.49 -0.17 -0.96 16 23 C -0.11 -0.50 5.22 -26.64 -0.14 -0.64 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 30 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 34 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.55 7.73 -51.93 -0.40 0.15 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.10 0.31 8.14 -51.92 -0.42 -0.11 16 42 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 357.27 15.07 5.38 5.38 Total: -1.00 -33.94 357.27 -8.54 -42.47 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -7.55 Total: -6.40 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -1.52 Total: -13.69 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.74 Total: -26.45 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.57 Total: -17.96 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.94 -8.54 -42.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696029.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.497 kcal (2) G-P(sol) polarization free energy of solvation -33.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds