Wall clock time and date at job start Tue Mar 31 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00317 * 2 1 4 4 H 1.48497 * 109.47036 * 240.00268 * 3 2 1 5 5 H 1.48502 * 109.46762 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47390 * 119.99580 * 3 2 1 7 7 C 1.37875 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00560 * 179.97438 * 7 2 1 9 9 C 1.50711 * 119.99692 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47069 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47250 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47250 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47083 * 179.97438 * 12 11 10 14 14 O 1.20826 * 119.99877 * 0.02562 * 13 12 11 15 15 O 1.34228 * 120.00177 * 179.97438 * 13 12 11 16 16 C 1.45195 * 117.00356 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47461 * 180.02562 * 16 15 13 18 18 O 1.20763 * 119.99849 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00161 * 180.02562 * 17 16 15 20 20 C 1.54894 * 110.48422 * 93.23949 * 19 17 16 21 21 C 1.55238 * 102.58338 * 156.67616 * 20 19 17 22 22 C 1.54266 * 104.23333 * 322.08174 * 21 20 19 23 23 C 1.53869 * 106.59800 * 23.61579 * 22 21 20 24 24 H 0.97004 * 119.99381 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46952 * 59.99757 * 9 7 2 26 26 H 1.09000 * 109.46929 * 299.99568 * 9 7 2 27 27 H 1.09006 * 109.47106 * 59.99415 * 10 9 7 28 28 H 1.09000 * 109.47068 * 299.99698 * 10 9 7 29 29 H 1.08994 * 109.47311 * 59.99363 * 11 10 9 30 30 H 1.09000 * 109.46763 * 299.99791 * 11 10 9 31 31 H 1.09004 * 109.46819 * 59.99781 * 12 11 10 32 32 H 1.09000 * 109.47068 * 299.99605 * 12 11 10 33 33 H 1.09003 * 109.47179 * 59.99642 * 16 15 13 34 34 H 1.09002 * 109.46934 * 300.00051 * 16 15 13 35 35 H 1.09002 * 110.43350 * 330.69728 * 19 17 16 36 36 H 1.08996 * 110.75388 * 275.05970 * 20 19 17 37 37 H 1.08993 * 110.76071 * 38.44196 * 20 19 17 38 38 H 1.09005 * 110.46917 * 203.39204 * 21 20 19 39 39 H 1.09007 * 110.58541 * 80.83124 * 21 20 19 40 40 H 1.08999 * 110.03060 * 264.32313 * 22 21 20 41 41 H 1.09006 * 110.06829 * 142.91691 * 22 21 20 42 42 H 1.09001 * 110.02983 * 240.71432 * 23 22 21 43 43 H 1.08995 * 110.03881 * 119.28625 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4744 -6.1501 0.0005 13 6 1.7209 -7.4552 0.0005 14 8 0.5126 -7.4551 -0.0004 15 8 2.3920 -8.6176 0.0005 16 6 1.6012 -9.8353 0.0000 17 6 2.5191 -11.0305 0.0007 18 8 3.7163 -10.8723 0.0011 19 6 1.9431 -12.4230 -0.0003 20 6 1.8133 -12.9549 -1.4493 21 6 1.8142 -14.4939 -1.2460 22 6 2.8314 -14.7258 -0.1096 23 6 2.9133 -13.4091 0.6824 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 0.8538 -5.0446 -0.8902 30 1 0.8533 -5.0451 0.8897 31 1 3.1005 -6.0923 0.8910 32 1 3.1017 -6.0923 -0.8890 33 1 0.9726 -9.8600 -0.8903 34 1 0.9720 -9.8604 0.8897 35 1 0.9740 -12.4343 0.4985 36 1 0.8782 -12.6229 -1.9002 37 1 2.6662 -12.6444 -2.0527 38 1 2.1378 -14.9985 -2.1564 39 1 0.8247 -14.8419 -0.9492 40 1 3.8077 -14.9720 -0.5269 41 1 2.4893 -15.5316 0.5400 42 1 3.9295 -13.0162 0.6495 43 1 2.6103 -13.5756 1.7161 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805696922.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:16 Heat of formation + Delta-G solvation = -163.910849 kcal Electronic energy + Delta-G solvation = -21012.314613 eV Core-core repulsion = 17635.246944 eV Total energy + Delta-G solvation = -3377.067669 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.86067 -40.00324 -37.57538 -36.56476 -34.98659 -32.69601 -31.07916 -29.97188 -29.21979 -28.31386 -25.77395 -23.04825 -22.10946 -20.98247 -20.60650 -20.03821 -19.56991 -17.66565 -17.26644 -16.94570 -16.26855 -16.16847 -15.93438 -15.35403 -14.88145 -14.48604 -14.39157 -13.98277 -13.86832 -13.17415 -12.94287 -12.65090 -12.53084 -12.26522 -11.75986 -11.72603 -11.67887 -11.67321 -11.60918 -11.29494 -11.00080 -10.95973 -10.90097 -10.62525 -10.58493 -10.49068 -10.46157 -9.94538 -9.64754 -9.28438 -9.02993 -8.31095 -5.96096 -3.98672 1.46896 2.21611 2.33460 3.35629 3.39855 3.42315 3.56195 3.97733 4.04245 4.36928 4.48636 4.66666 4.72995 4.81201 4.85726 4.89741 4.94623 5.00320 5.03753 5.15878 5.24865 5.27274 5.31248 5.39350 5.43989 5.58595 5.64075 5.70690 5.77021 5.84987 6.05236 6.17145 6.28050 6.46398 6.76380 6.94215 7.04788 7.16161 7.71843 7.73265 7.86984 8.04528 8.46355 9.08585 9.65064 11.15150 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.064174 B = 0.002008 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.205808 B =13940.352758 C =14161.585583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.111 4.111 11 C -0.108 4.108 12 C -0.111 4.111 13 C 0.460 3.540 14 O -0.505 6.505 15 O -0.345 6.345 16 C 0.013 3.987 17 C 0.362 3.638 18 O -0.424 6.424 19 C -0.137 4.137 20 C -0.112 4.112 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.119 4.119 24 H 0.261 0.739 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.453 -30.663 -0.718 30.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.148 4.148 13 C 0.304 3.696 14 O -0.392 6.392 15 O -0.262 6.262 16 C -0.062 4.062 17 C 0.234 3.766 18 O -0.295 6.295 19 C -0.156 4.156 20 C -0.150 4.150 21 C -0.160 4.160 22 C -0.162 4.162 23 C -0.157 4.157 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.585 -30.488 -0.712 30.706 hybrid contribution 0.082 0.907 0.050 0.913 sum 3.667 -29.580 -0.662 29.814 Atomic orbital electron populations 1.69966 1.06046 1.26641 1.50823 1.25041 0.94859 0.99253 0.95412 0.86655 0.79561 0.83173 0.78576 1.20276 1.21323 1.20269 1.21241 0.92998 0.91149 1.50590 0.92726 1.19097 0.94025 0.91219 0.97358 1.21656 0.99168 0.93504 1.00484 1.21585 0.97063 0.92677 1.03241 1.21631 0.99969 0.87501 1.05742 1.24359 0.87652 0.85797 0.71808 1.90675 1.15593 1.87756 1.45130 1.86635 1.40889 1.14160 1.84529 1.23422 0.94788 0.82773 1.05199 1.24429 0.89702 0.90862 0.71558 1.90429 1.17521 1.88045 1.33479 1.22520 1.01436 0.92293 0.99388 1.22551 1.02821 0.95916 0.93668 1.22418 0.99704 0.95092 0.98815 1.22127 0.99747 0.97165 0.97124 1.22173 1.00246 0.94174 0.99069 0.92985 0.96543 0.96532 0.93152 0.93160 0.91508 0.91518 0.87706 0.87701 0.87806 0.87817 0.87827 0.90391 0.90688 0.91157 0.91154 0.91509 0.91523 0.89999 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 11 C -0.11 -1.87 4.50 -26.73 -0.12 -1.99 16 12 C -0.11 -1.52 5.81 -27.88 -0.16 -1.68 16 13 C 0.46 6.61 7.96 36.01 0.29 6.89 16 14 O -0.50 -8.43 15.73 -18.75 -0.29 -8.73 16 15 O -0.35 -4.54 9.75 -45.91 -0.45 -4.99 16 16 C 0.01 0.13 5.88 36.00 0.21 0.34 16 17 C 0.36 3.34 6.36 -29.04 -0.18 3.16 16 18 O -0.42 -5.45 15.83 -13.71 -0.22 -5.67 16 19 C -0.14 -0.84 3.18 -90.11 -0.29 -1.13 16 20 C -0.11 -0.61 6.34 -24.55 -0.16 -0.76 16 21 C -0.12 -0.56 6.84 -24.88 -0.17 -0.73 16 22 C -0.12 -0.64 6.80 -25.62 -0.17 -0.81 16 23 C -0.12 -0.76 6.33 -25.62 -0.16 -0.92 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 30 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 31 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.10 0.86 8.13 -51.93 -0.42 0.44 16 34 H 0.10 0.86 8.13 -51.93 -0.42 0.43 16 35 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.49 8.05 -51.93 -0.42 0.07 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.67 6.84 -51.93 -0.36 0.32 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -33.93 359.41 -8.93 -42.86 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -7.50 Total: -5.73 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -1.61 Total: -13.40 kcal Atomic # 7 Polarization: -27.38 SS G_CDS: 0.74 Total: -26.64 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.96 Total: -19.38 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.93 -8.93 -42.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696922.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.051 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds