Wall clock time and date at job start Tue Mar 31 2020 05:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47278 * 2 1 4 4 O 1.45201 * 109.46934 * 239.99568 * 2 1 3 5 5 C 1.34222 * 117.00137 * 90.00375 * 4 2 1 6 6 O 1.20833 * 119.99852 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00432 * 179.71953 * 5 4 2 8 8 C 1.52996 * 109.47298 * 180.27351 * 7 5 4 9 9 C 1.53005 * 109.46952 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.46953 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46969 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00300 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99923 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00057 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99926 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47118 * 90.00190 * 15 13 11 17 17 H 1.48498 * 109.47011 * 210.00049 * 15 13 11 18 18 H 1.48499 * 109.47134 * 329.99670 * 15 13 11 19 19 C 1.50704 * 109.46771 * 120.00163 * 2 1 3 20 20 N 1.31063 * 126.66519 * 74.68088 * 19 2 1 21 21 N 1.28842 * 107.99256 * 179.89685 * 20 19 2 22 22 N 1.28736 * 109.39726 * 0.37692 * 21 20 19 23 23 N 1.29016 * 108.80837 * 359.76821 * 22 21 20 24 24 C 1.46505 * 126.43927 * 179.97438 * 23 22 21 25 25 H 1.09004 * 109.47062 * 300.00770 * 1 2 3 26 26 H 1.09005 * 109.47320 * 59.99859 * 1 2 3 27 27 H 1.08999 * 109.47835 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47190 * 300.28287 * 7 5 4 29 29 H 1.09006 * 109.46468 * 60.27870 * 7 5 4 30 30 H 1.08994 * 109.47515 * 300.00215 * 8 7 5 31 31 H 1.09006 * 109.46938 * 60.00806 * 8 7 5 32 32 H 1.09000 * 109.47278 * 300.00777 * 9 8 7 33 33 H 1.08998 * 109.46882 * 60.00298 * 9 8 7 34 34 H 1.09008 * 109.47282 * 300.00004 * 10 9 8 35 35 H 1.08998 * 109.47408 * 60.00223 * 10 9 8 36 36 H 0.96999 * 120.00128 * 179.97438 * 14 13 11 37 37 H 1.09001 * 109.46849 * 270.02190 * 24 23 22 38 38 H 1.08993 * 109.46944 * 30.02352 * 24 23 22 39 39 H 1.08995 * 109.47069 * 150.02823 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6846 -1.1855 5 6 2.2171 0.0638 -2.2811 6 8 1.9983 1.2517 -2.2504 7 6 2.7247 -0.5763 -3.5474 8 6 2.8746 0.4907 -4.6336 9 6 3.3893 -0.1594 -5.9195 10 6 3.5398 0.9077 -7.0055 11 6 4.0462 0.2674 -8.2722 12 1 4.2417 -0.7945 -8.2998 13 6 4.2601 1.0371 -9.3960 14 7 4.7025 0.4784 -10.5013 15 14 3.9228 2.8738 -9.3482 16 1 5.1521 3.5920 -8.9260 17 1 3.5176 3.3380 -10.6993 18 1 2.8304 3.1514 -8.3813 19 6 2.0322 -0.7105 1.2305 20 7 2.0312 -2.0038 1.4427 21 7 2.5427 -2.2167 2.6059 22 7 2.8628 -1.0921 3.1445 23 7 2.5636 -0.1395 2.3275 24 6 2.7640 1.2944 2.5518 25 1 -0.3633 0.5140 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3635 -1.0276 0.0005 28 1 3.6927 -1.0400 -3.3574 29 1 2.0169 -1.3359 -3.8795 30 1 1.9066 0.9543 -4.8236 31 1 3.5824 1.2503 -4.3015 32 1 4.3573 -0.6234 -5.7298 33 1 2.6813 -0.9187 -6.2513 34 1 2.5720 1.3720 -7.1953 35 1 4.2481 1.6668 -6.6734 36 1 4.8526 1.0198 -11.2920 37 1 1.8777 1.7151 3.0268 38 1 3.6284 1.4435 3.1988 39 1 2.9348 1.7911 1.5968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805697659.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:08 Heat of formation + Delta-G solvation = 15.611759 kcal Electronic energy + Delta-G solvation = -21336.705695 eV Core-core repulsion = 17896.175119 eV Total energy + Delta-G solvation = -3440.530576 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.66377 -40.90463 -37.40911 -36.19858 -35.20963 -34.08450 -32.67895 -31.27671 -30.27979 -28.96660 -26.51982 -25.35642 -23.94959 -22.90697 -21.75701 -20.57888 -20.15103 -18.20798 -17.99746 -17.70331 -17.07706 -16.64356 -16.58137 -15.17595 -15.03063 -14.49494 -14.35194 -14.23863 -13.81364 -13.71464 -13.27243 -12.78441 -12.72692 -12.60369 -12.57980 -12.29307 -11.99582 -11.83479 -11.51100 -11.39383 -11.30898 -11.22657 -10.87256 -10.75458 -10.65263 -10.56310 -9.92959 -9.73271 -9.59159 -9.17847 -8.53550 -6.04144 -4.02144 0.62891 1.31404 1.75387 1.97744 2.34028 3.24556 3.30994 3.38472 3.42727 3.67753 3.96941 4.22710 4.25252 4.44342 4.45653 4.57126 4.64658 4.84665 4.97969 5.10641 5.12605 5.15122 5.21468 5.30199 5.48347 5.56544 5.59502 5.87088 5.95697 6.05410 6.25792 6.54581 6.67944 6.89811 7.30200 7.42967 7.48158 7.79915 8.14439 8.54008 9.00946 9.58595 11.09332 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.036653 B = 0.002574 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.735978 B =10874.609704 C =11105.026366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.174 3.826 3 H 0.109 0.891 4 O -0.338 6.338 5 C 0.465 3.535 6 O -0.504 6.504 7 C -0.111 4.111 8 C -0.111 4.111 9 C -0.103 4.103 10 C -0.015 4.015 11 C -0.521 4.521 12 H 0.072 0.928 13 C 0.065 3.935 14 N -0.905 5.905 15 Si 0.880 3.120 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.265 1.265 19 C 0.178 3.822 20 N -0.270 5.270 21 N -0.073 5.073 22 N -0.088 5.088 23 N -0.301 5.301 24 C 0.072 3.928 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.016 0.984 35 H 0.011 0.989 36 H 0.263 0.737 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.513 2.985 27.194 28.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.116 3.884 3 H 0.127 0.873 4 O -0.254 6.254 5 C 0.309 3.691 6 O -0.391 6.391 7 C -0.149 4.149 8 C -0.148 4.148 9 C -0.141 4.141 10 C -0.052 4.052 11 C -0.559 4.559 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.544 5.544 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.189 1.189 19 C -0.101 4.101 20 N -0.120 5.120 21 N -0.067 5.067 22 N -0.074 5.074 23 N -0.104 5.104 24 C -0.069 4.069 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.131 0.869 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.270 2.225 27.812 28.832 hybrid contribution -0.162 2.008 -0.369 2.048 sum -7.432 4.233 27.443 28.745 Atomic orbital electron populations 1.22203 0.90909 1.04952 1.04176 1.20596 0.95561 0.94530 0.77753 0.87292 1.86731 1.77231 1.42047 1.19421 1.24418 0.73651 0.86105 0.84971 1.90666 1.47949 1.16626 1.83810 1.21647 1.03747 1.01055 0.88420 1.21626 1.02673 0.96571 0.93974 1.21483 1.00230 0.99334 0.93018 1.19570 0.96524 0.94733 0.94362 1.21170 1.43784 0.96744 0.94201 0.91022 1.25051 0.94607 0.98554 0.95401 1.69918 1.46303 1.36088 1.02052 0.86770 0.79213 0.85980 0.77285 1.20343 1.21435 1.18945 1.25573 1.00970 0.90650 0.92872 1.75096 1.16348 1.11173 1.09393 1.78701 1.11298 1.15194 1.01481 1.78929 1.18431 0.92271 1.17753 1.48454 1.39615 1.10703 1.11629 1.22550 1.06122 0.72270 1.05982 0.90427 0.89675 0.89901 0.87439 0.87212 0.91392 0.91536 0.92539 0.92428 0.96572 0.97058 0.92764 0.87853 0.86863 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.53 37.16 0.35 -0.77 16 2 C 0.17 1.49 2.96 -27.88 -0.08 1.40 16 3 H 0.11 0.75 5.87 -51.93 -0.30 0.44 16 4 O -0.34 -3.72 9.86 -39.24 -0.39 -4.10 16 5 C 0.46 5.47 7.93 36.00 0.29 5.76 16 6 O -0.50 -6.82 15.20 -18.76 -0.29 -7.11 16 7 C -0.11 -1.28 5.81 -27.89 -0.16 -1.44 16 8 C -0.11 -1.64 4.50 -26.73 -0.12 -1.76 16 9 C -0.10 -1.89 5.15 -26.73 -0.14 -2.03 16 10 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 11 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 12 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 13 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 14 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 15 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 19 C 0.18 1.75 7.03 -155.43 -1.09 0.66 16 20 N -0.27 -3.50 12.36 32.70 0.40 -3.10 16 21 N -0.07 -0.97 13.43 60.35 0.81 -0.16 16 22 N -0.09 -0.97 13.29 60.35 0.80 -0.17 16 23 N -0.30 -2.43 3.75 -65.03 -0.24 -2.67 16 24 C 0.07 0.18 11.21 59.85 0.67 0.85 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.04 8.10 -51.93 -0.42 0.61 16 31 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.02 0.38 7.20 -51.92 -0.37 0.00 16 35 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.10 0.03 8.14 -51.93 -0.42 -0.40 16 38 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 39 H 0.11 0.12 7.01 -51.93 -0.36 -0.25 16 LS Contribution 336.79 15.07 5.08 5.08 Total: -1.00 -35.62 336.79 -4.21 -39.84 By element: Atomic # 1 Polarization: -0.74 SS G_CDS: -5.67 Total: -6.41 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -0.83 Total: -11.10 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 2.55 Total: -33.25 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.67 Total: -11.21 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.62 -4.21 -39.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805697659.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.449 kcal (2) G-P(sol) polarization free energy of solvation -35.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds