Wall clock time and date at job start Tue Mar 31 2020 06:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99847 * 2 1 4 4 H 1.48490 * 109.47199 * 240.00100 * 3 2 1 5 5 H 1.48506 * 109.46880 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46993 * 119.99877 * 3 2 1 7 7 C 1.37879 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99994 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99812 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47246 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47528 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47528 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47246 * 180.02562 * 12 11 10 14 14 O 1.20822 * 120.00145 * 359.97438 * 13 12 11 15 15 O 1.34228 * 119.99682 * 179.97438 * 13 12 11 16 16 C 1.45201 * 116.99414 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.46762 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47288 * 180.02562 * 17 16 15 19 19 H 1.09007 * 110.00284 * 306.28815 * 18 17 16 20 20 C 1.54281 * 109.98841 * 185.00090 * 18 17 16 21 21 C 1.54986 * 103.88177 * 217.60234 * 20 18 17 22 22 C 1.54891 * 102.33414 * 37.00620 * 21 20 18 23 23 C 1.51690 * 110.13296 * 67.63829 * 18 17 16 24 24 O 1.20757 * 126.31698 * 298.95212 * 23 18 17 25 25 H 0.96994 * 120.00000 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47274 * 59.99305 * 9 7 2 27 27 H 1.09005 * 109.47070 * 300.00061 * 9 7 2 28 28 H 1.09001 * 109.46908 * 59.99409 * 10 9 7 29 29 H 1.09000 * 109.47085 * 299.99708 * 10 9 7 30 30 H 1.08999 * 109.46981 * 59.99503 * 11 10 9 31 31 H 1.09000 * 109.46851 * 300.00037 * 11 10 9 32 32 H 1.09001 * 109.46908 * 59.99594 * 12 11 10 33 33 H 1.08997 * 109.46696 * 300.00234 * 12 11 10 34 34 H 1.08990 * 109.47398 * 60.00248 * 16 15 13 35 35 H 1.09002 * 109.47430 * 299.99596 * 16 15 13 36 36 H 1.09001 * 109.47735 * 60.00007 * 17 16 15 37 37 H 1.08997 * 109.47405 * 299.99763 * 17 16 15 38 38 H 1.09002 * 110.57272 * 98.95794 * 20 18 17 39 39 H 1.09003 * 110.56663 * 336.23654 * 20 18 17 40 40 H 1.09001 * 110.83104 * 155.22071 * 21 20 18 41 41 H 1.09007 * 110.83016 * 278.59553 * 21 20 18 42 42 H 1.09002 * 110.43881 * 81.11910 * 22 21 20 43 43 H 1.09000 * 110.43877 * 203.63617 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0005 13 6 1.7213 -7.4551 0.0005 14 8 0.5131 -7.4552 0.0015 15 8 2.3925 -8.6175 -0.0005 16 6 1.6016 -9.8352 0.0001 17 6 2.5337 -11.0486 -0.0006 18 6 1.7005 -12.3318 -0.0005 19 1 0.9894 -12.3146 0.8254 20 6 2.6248 -13.5607 0.1251 21 6 1.9637 -14.6187 -0.7945 22 6 1.4452 -13.7561 -1.9718 23 6 0.9612 -12.4743 -1.3174 24 8 0.1414 -11.7082 -1.7638 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8721 -3.6042 0.8905 29 1 2.8720 -3.6043 -0.8895 30 1 0.8535 -5.0451 -0.8885 31 1 0.8542 -5.0446 0.8914 32 1 3.1021 -6.0921 0.8900 33 1 3.1007 -6.0922 -0.8899 34 1 0.9719 -9.8600 -0.8890 35 1 0.9739 -9.8604 0.8909 36 1 3.1633 -11.0238 0.8889 37 1 3.1618 -11.0238 -0.8910 38 1 2.6543 -13.9140 1.1559 39 1 3.6288 -13.3222 -0.2257 40 1 2.6990 -15.3452 -1.1405 41 1 1.1402 -15.1169 -0.2827 42 1 2.2524 -13.5444 -2.6730 43 1 0.6217 -14.2593 -2.4785 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805698120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:40 Heat of formation + Delta-G solvation = -168.312282 kcal Electronic energy + Delta-G solvation = -21064.529094 eV Core-core repulsion = 17687.270565 eV Total energy + Delta-G solvation = -3377.258529 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.65758 -40.14122 -37.05390 -36.56395 -34.93181 -33.17233 -32.61678 -29.95567 -28.39803 -27.00739 -25.71086 -23.21686 -22.34820 -21.57271 -20.48840 -19.98921 -19.41714 -17.46575 -17.31615 -16.49964 -16.27421 -16.18017 -16.00035 -15.08251 -14.84545 -14.43553 -14.26959 -14.07983 -13.65511 -13.41193 -13.14934 -12.67042 -12.53397 -12.18007 -12.04204 -11.89197 -11.73948 -11.72463 -11.62544 -11.43101 -11.29031 -10.97283 -10.66531 -10.55726 -10.53671 -10.43127 -10.28117 -9.73577 -9.61841 -9.25942 -9.00708 -8.29254 -5.94093 -3.96774 1.47225 2.37051 2.66927 3.36579 3.40827 3.43170 3.55672 3.89896 4.11068 4.31396 4.49913 4.54140 4.55737 4.63679 4.85757 4.90527 4.96268 5.05654 5.15838 5.22042 5.26622 5.31328 5.35652 5.38529 5.41132 5.44382 5.53756 5.63258 5.68663 5.81099 6.09448 6.23513 6.47077 6.52785 6.80114 6.98434 7.04840 7.19059 7.74397 7.89481 7.89814 8.06817 8.48368 9.10591 9.66766 11.17175 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.056802 B = 0.002041 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.826153 B =13717.584466 C =13962.230812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.111 4.111 13 C 0.458 3.542 14 O -0.503 6.503 15 O -0.364 6.364 16 C 0.055 3.945 17 C -0.103 4.103 18 C -0.150 4.150 19 H 0.107 0.893 20 C -0.115 4.115 21 C -0.121 4.121 22 C -0.184 4.184 23 C 0.365 3.635 24 O -0.433 6.433 25 H 0.261 0.739 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.709 -32.255 -0.121 33.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.147 4.147 12 C -0.148 4.148 13 C 0.301 3.699 14 O -0.390 6.390 15 O -0.281 6.281 16 C -0.019 4.019 17 C -0.141 4.141 18 C -0.169 4.169 19 H 0.125 0.875 20 C -0.152 4.152 21 C -0.159 4.159 22 C -0.222 4.222 23 C 0.239 3.761 24 O -0.304 6.304 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.124 0.876 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.728 -31.753 -0.361 32.460 hybrid contribution 0.294 0.794 0.052 0.848 sum 7.022 -30.959 -0.309 31.747 Atomic orbital electron populations 1.69965 1.06045 1.26638 1.50805 1.25049 0.94857 0.99250 0.95445 0.86656 0.79554 0.83204 0.78548 1.20280 1.21327 1.20286 1.21238 0.92972 0.91156 1.50579 0.92742 1.19098 0.94045 0.91220 0.97381 1.21648 0.99136 0.93564 1.00380 1.21579 0.97113 0.92702 1.03262 1.21598 0.99898 0.87912 1.05423 1.24199 0.87643 0.85879 0.72165 1.90682 1.15721 1.87832 1.44718 1.86468 1.42084 1.15067 1.84529 1.23167 0.93683 0.81355 1.03715 1.21425 0.97750 0.90372 1.04536 1.22382 0.99168 0.96321 0.99055 0.87549 1.22367 0.98665 0.93266 1.00952 1.22435 1.00834 0.97217 0.95370 1.22911 1.03251 0.96250 0.99739 1.25107 0.78578 0.85231 0.87203 1.90471 1.27033 1.45495 1.67390 0.92982 0.96539 0.96535 0.93215 0.93208 0.91543 0.91548 0.87914 0.87938 0.89988 0.91291 0.89433 0.90358 0.90209 0.90222 0.90092 0.90662 0.87622 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.29 55.43 0.74 -26.94 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 11 C -0.11 -1.97 4.50 -26.73 -0.12 -2.09 16 12 C -0.11 -1.56 5.81 -27.89 -0.16 -1.73 16 13 C 0.46 7.11 7.96 36.00 0.29 7.40 16 14 O -0.50 -9.53 15.73 -18.75 -0.29 -9.82 16 15 O -0.36 -4.86 10.22 -39.25 -0.40 -5.26 16 16 C 0.05 0.63 5.27 37.16 0.20 0.83 16 17 C -0.10 -0.76 4.93 -26.73 -0.13 -0.89 16 18 C -0.15 -0.89 2.87 -90.61 -0.26 -1.15 16 19 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 20 C -0.12 -0.38 6.39 -25.01 -0.16 -0.54 16 21 C -0.12 -0.35 6.95 -24.68 -0.17 -0.53 16 22 C -0.18 -0.87 6.72 -26.32 -0.18 -1.05 16 23 C 0.37 2.95 7.05 -27.98 -0.20 2.75 16 24 O -0.43 -5.44 16.07 6.00 0.10 -5.34 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 31 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 32 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.08 1.12 6.15 -51.93 -0.32 0.80 16 35 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.08 0.22 7.85 -51.93 -0.41 -0.19 16 40 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 41 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 357.69 15.07 5.39 5.39 Total: -1.00 -34.99 357.69 -8.53 -43.52 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -7.45 Total: -5.66 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -1.59 Total: -12.91 kcal Atomic # 7 Polarization: -27.68 SS G_CDS: 0.74 Total: -26.94 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.60 Total: -20.42 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.99 -8.53 -43.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805698120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.792 kcal (2) G-P(sol) polarization free energy of solvation -34.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds