Wall clock time and date at job start Tue Mar 31 2020 06:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99679 * 2 1 4 4 H 1.48506 * 109.47393 * 269.99857 * 3 2 1 5 5 H 1.48501 * 109.47179 * 30.00112 * 3 2 1 6 6 H 1.48504 * 109.47429 * 150.00263 * 3 2 1 7 7 C 1.37879 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99703 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99992 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47242 * 180.02562 * 10 9 7 12 12 O 1.45196 * 109.47070 * 180.02562 * 11 10 9 13 13 C 1.34234 * 116.99938 * 179.97438 * 12 11 10 14 14 O 1.20822 * 119.99973 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00068 * 179.97438 * 13 12 11 16 16 H 1.09000 * 109.48101 * 59.99881 * 15 13 12 17 17 C 1.52660 * 109.48233 * 180.02562 * 15 13 12 18 18 C 1.54025 * 110.40184 * 193.53018 * 17 15 13 19 19 C 1.52456 * 111.05080 * 44.79065 * 18 17 15 20 20 C 1.54092 * 109.26772 * 245.78169 * 19 18 17 21 21 C 1.52044 * 109.16765 * 78.00150 * 20 19 18 22 22 C 1.51112 * 109.14484 * 287.37746 * 21 20 19 23 23 O 1.20763 * 120.42965 * 291.13020 * 22 21 20 24 24 C 1.49495 * 119.13913 * 111.15630 * 22 21 20 25 25 H 0.96998 * 120.00464 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46789 * 59.99988 * 9 7 2 27 27 H 1.08999 * 109.47285 * 299.99845 * 9 7 2 28 28 H 1.08998 * 109.46945 * 59.99672 * 10 9 7 29 29 H 1.08999 * 109.47046 * 300.00193 * 10 9 7 30 30 H 1.08996 * 109.47090 * 59.99784 * 11 10 9 31 31 H 1.08999 * 109.47084 * 299.99957 * 11 10 9 32 32 H 1.09006 * 109.30957 * 313.81646 * 17 15 13 33 33 H 1.08996 * 109.31529 * 73.42728 * 17 15 13 34 34 H 1.09008 * 109.15703 * 165.19428 * 18 17 15 35 35 H 1.08996 * 109.16322 * 284.38217 * 18 17 15 36 36 H 1.09004 * 109.50399 * 5.72322 * 19 18 17 37 37 H 1.09001 * 109.50138 * 125.84549 * 19 18 17 38 38 H 1.08998 * 109.52508 * 197.90930 * 20 19 18 39 39 H 1.09003 * 109.52424 * 318.09534 * 20 19 18 40 40 H 1.09001 * 109.52696 * 47.27747 * 21 20 19 41 41 H 1.08998 * 109.52825 * 167.41396 * 21 20 19 42 42 H 1.08996 * 109.78847 * 197.41191 * 24 22 21 43 43 H 1.08992 * 109.80658 * 76.54531 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 6 5.5517 -2.6363 -0.0009 12 8 6.0357 -4.0052 -0.0014 13 6 7.3665 -4.1810 -0.0020 14 8 8.1025 -3.2228 -0.0016 15 6 7.9426 -5.5736 -0.0019 16 1 7.6064 -6.1061 -0.8916 17 6 9.4671 -5.4939 -0.0020 18 6 10.0766 -6.8675 -0.3397 19 6 9.3537 -7.5129 -1.5167 20 6 8.6278 -8.7831 -1.0329 21 6 7.3486 -8.3841 -0.3144 22 6 7.7003 -7.7832 1.0267 23 8 8.1610 -8.4732 1.9042 24 6 7.4700 -6.3236 1.2533 25 1 -0.4851 0.8400 -0.0004 26 1 3.8752 -0.6803 0.8889 27 1 3.8746 -0.6799 -0.8911 28 1 3.6580 -3.1504 -0.8907 29 1 3.6587 -3.1500 0.8892 30 1 5.9149 -2.1224 0.8890 31 1 5.9150 -2.1225 -0.8909 32 1 9.7899 -4.7638 -0.7443 33 1 9.8119 -5.1820 0.9839 34 1 11.1291 -6.7394 -0.5928 35 1 9.9955 -7.5186 0.5306 36 1 8.6266 -6.8116 -1.9260 37 1 10.0777 -7.7785 -2.2870 38 1 8.3836 -9.4116 -1.8893 39 1 9.2735 -9.3334 -0.3485 40 1 6.8088 -7.6498 -0.9124 41 1 6.7234 -9.2647 -0.1674 42 1 8.0413 -5.9900 2.1196 43 1 6.4085 -6.1381 1.4164 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811384401.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:59 Heat of formation + Delta-G solvation = -154.435153 kcal Electronic energy + Delta-G solvation = -22375.759426 eV Core-core repulsion = 18999.102655 eV Total energy + Delta-G solvation = -3376.656772 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.15596 -39.97335 -37.40541 -36.46539 -34.19357 -33.86948 -32.05263 -31.78735 -27.92134 -26.97807 -26.41397 -23.53691 -22.63071 -21.46035 -20.41507 -20.06460 -19.29310 -17.81275 -17.11737 -16.85055 -16.55374 -15.92845 -15.60061 -15.33586 -14.87986 -14.36074 -14.26614 -14.19553 -14.05256 -13.51047 -12.80319 -12.75532 -12.68398 -12.57840 -12.35095 -12.07922 -11.95350 -11.84551 -11.47068 -11.20452 -11.09522 -11.00926 -10.81307 -10.73151 -10.58834 -10.48941 -10.06279 -9.88650 -9.78209 -9.70045 -9.28362 -8.59760 -6.09937 -4.09243 1.59309 2.17252 2.67871 3.27442 3.35383 3.38414 3.71332 4.19062 4.26925 4.29399 4.40218 4.43294 4.52083 4.64684 4.73321 4.87025 4.98863 5.07253 5.20560 5.23301 5.26378 5.38808 5.39638 5.40822 5.43846 5.50293 5.57131 5.66670 5.72667 5.81192 5.81619 5.87161 5.98430 6.29341 6.33860 6.61052 6.75310 7.15596 7.16843 7.28324 7.68435 7.78410 8.46402 8.94145 9.51506 11.03213 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030329 B = 0.003027 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.984738 B = 9247.810998 C = 9658.939273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.065 3.935 12 O -0.355 6.355 13 C 0.461 3.539 14 O -0.507 6.507 15 C -0.086 4.086 16 H 0.126 0.874 17 C -0.110 4.110 18 C -0.130 4.130 19 C -0.135 4.135 20 C -0.113 4.113 21 C -0.179 4.179 22 C 0.374 3.626 23 O -0.458 6.458 24 C -0.169 4.169 25 H 0.264 0.736 26 H 0.019 0.981 27 H 0.015 0.985 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.590 -16.683 -2.515 25.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.139 4.139 11 C -0.008 4.008 12 O -0.272 6.272 13 C 0.303 3.697 14 O -0.395 6.395 15 C -0.105 4.105 16 H 0.143 0.857 17 C -0.148 4.148 18 C -0.168 4.168 19 C -0.172 4.172 20 C -0.150 4.150 21 C -0.216 4.216 22 C 0.249 3.751 23 O -0.332 6.332 24 C -0.207 4.207 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 19.865 -16.604 -2.039 25.970 hybrid contribution 0.237 1.262 -0.067 1.286 sum 20.102 -15.342 -2.105 25.375 Atomic orbital electron populations 1.69903 1.06290 1.27018 1.50770 1.25015 0.94755 0.99186 0.94436 0.86788 0.80374 0.83588 0.78606 1.20191 1.21264 1.18985 1.21049 0.89021 0.94669 1.51298 0.90790 1.19521 0.97552 0.91067 0.96677 1.21561 0.88684 1.00826 1.02832 1.23522 0.97107 0.77992 1.02154 1.86479 1.23221 1.34401 1.83057 1.23457 0.81481 0.91995 0.72754 1.90661 1.60712 1.43040 1.45135 1.21383 0.97181 0.90805 1.01140 0.85676 1.21721 0.91229 0.97899 1.03939 1.21866 1.00281 0.95987 0.98636 1.21991 1.00125 0.96949 0.98137 1.21640 0.95207 0.97832 1.00346 1.22201 1.00089 1.03214 0.96121 1.24247 0.72281 0.90025 0.88499 1.90424 1.33351 1.64186 1.45241 1.22261 1.05631 0.94323 0.98467 0.92612 0.96295 0.96717 0.91500 0.91502 0.91485 0.91483 0.89993 0.90701 0.90966 0.91529 0.90700 0.91116 0.90547 0.90888 0.88774 0.88431 0.88158 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.52 -14.63 9.66 -34.44 -0.33 -14.96 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.10 -1.93 5.53 -26.73 -0.15 -2.08 16 11 C 0.07 1.08 5.47 37.16 0.20 1.28 16 12 O -0.36 -5.15 9.87 -39.27 -0.39 -5.54 16 13 C 0.46 6.04 7.24 36.01 0.26 6.30 16 14 O -0.51 -8.09 15.47 -18.75 -0.29 -8.38 16 15 C -0.09 -0.78 2.17 -91.60 -0.20 -0.98 16 16 H 0.13 0.90 3.44 -51.93 -0.18 0.72 16 17 C -0.11 -0.94 4.54 -26.37 -0.12 -1.06 16 18 C -0.13 -0.90 5.37 -26.47 -0.14 -1.04 16 19 C -0.13 -0.78 5.51 -26.44 -0.15 -0.92 16 20 C -0.11 -0.65 5.63 -26.65 -0.15 -0.80 16 21 C -0.18 -1.15 5.45 -28.17 -0.15 -1.30 16 22 C 0.37 3.33 4.16 -29.41 -0.12 3.21 16 23 O -0.46 -5.56 17.42 6.00 0.10 -5.46 16 24 C -0.17 -1.48 5.25 -28.11 -0.15 -1.63 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 27 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 1.11 8.13 -51.93 -0.42 0.68 16 31 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 32 H 0.08 0.76 7.59 -51.93 -0.39 0.36 16 33 H 0.07 0.68 7.86 -51.93 -0.41 0.27 16 34 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 35 H 0.07 0.53 5.66 -51.93 -0.29 0.24 16 36 H 0.07 0.42 5.52 -51.93 -0.29 0.13 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.49 7.56 -51.93 -0.39 0.10 16 40 H 0.09 0.50 6.16 -51.93 -0.32 0.18 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.10 0.90 7.84 -51.93 -0.41 0.50 16 43 H 0.12 1.02 7.76 -51.93 -0.40 0.62 16 LS Contribution 336.04 15.07 5.06 5.06 Total: -1.00 -32.55 336.04 -7.63 -40.18 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -6.82 Total: -3.43 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -1.41 Total: -12.50 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.77 Total: -26.72 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.57 Total: -19.37 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.55 -7.63 -40.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811384401.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.257 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds