Wall clock time and date at job start Tue Mar 31 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99849 * 2 1 4 4 H 1.48503 * 109.47108 * 240.00020 * 3 2 1 5 5 H 1.48495 * 109.47265 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46830 * 120.00413 * 3 2 1 7 7 C 1.37875 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99970 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46890 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46890 * 179.97438 * 10 9 7 12 12 O 1.20826 * 120.00162 * 0.27418 * 11 10 9 13 13 O 1.34234 * 120.00068 * 179.97438 * 11 10 9 14 14 C 1.45196 * 116.99938 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47070 * 180.02562 * 14 13 11 16 16 H 1.08997 * 110.53634 * 52.17173 * 15 14 13 17 17 C 1.55050 * 110.60004 * 174.99766 * 15 14 13 18 18 C 1.54954 * 102.10335 * 155.21446 * 17 15 14 19 19 C 1.53568 * 103.95167 * 339.13880 * 18 17 15 20 20 C 1.53734 * 110.21596 * 237.51466 * 19 18 17 21 21 C 1.55014 * 104.06401 * 216.53617 * 20 19 18 22 22 C 1.54929 * 102.81466 * 37.49569 * 21 20 19 23 23 C 1.53349 * 110.41848 * 119.32718 * 19 18 17 24 24 O 1.43142 * 107.94369 * 358.22941 * 19 18 17 25 25 H 0.97000 * 119.99706 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46859 * 60.00236 * 9 7 2 27 27 H 1.08999 * 109.46550 * 300.00119 * 9 7 2 28 28 H 1.08992 * 109.47456 * 60.00072 * 10 9 7 29 29 H 1.08999 * 109.47498 * 299.99387 * 10 9 7 30 30 H 1.09012 * 109.47257 * 300.00032 * 14 13 11 31 31 H 1.08996 * 109.47465 * 60.00089 * 14 13 11 32 32 H 1.08998 * 110.90646 * 273.41523 * 17 15 14 33 33 H 1.09002 * 110.90363 * 36.97697 * 17 15 14 34 34 H 1.08997 * 110.53060 * 97.75756 * 18 17 15 35 35 H 1.09007 * 110.52954 * 220.52455 * 18 17 15 36 36 H 1.09000 * 110.51104 * 335.18494 * 20 19 18 37 37 H 1.09001 * 110.51236 * 97.89587 * 20 19 18 38 38 H 1.09001 * 110.74773 * 279.15846 * 21 20 19 39 39 H 1.09005 * 110.89941 * 155.90042 * 21 20 19 40 40 H 1.09007 * 110.48776 * 203.67106 * 22 21 20 41 41 H 1.09000 * 110.59936 * 81.09132 * 22 21 20 42 42 H 1.08999 * 110.07381 * 239.14857 * 23 19 18 43 43 H 1.08999 * 110.07153 * 0.62959 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4918 -4.9671 0.0001 12 8 0.2836 -4.9671 -0.0045 13 8 2.1630 -6.1296 -0.0003 14 6 1.3722 -7.3473 -0.0002 15 6 2.3042 -8.5606 -0.0001 16 1 3.0335 -8.4825 0.8061 17 6 1.4899 -9.8740 0.1265 18 6 2.4420 -10.9104 -0.5218 19 6 3.3791 -10.0593 -1.3911 20 6 3.3108 -10.5216 -2.8557 21 6 4.7656 -10.3661 -3.3680 22 6 5.6095 -10.7913 -2.1404 23 6 4.8328 -10.2253 -0.9319 24 8 2.9662 -8.6934 -1.2779 25 1 -0.4850 0.8401 -0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5570 0.8897 28 1 2.8719 -3.6043 0.8894 29 1 2.8719 -3.6043 -0.8905 30 1 0.7436 -7.3723 0.8900 31 1 0.7431 -7.3721 -0.8900 32 1 1.3044 -10.1173 1.1727 33 1 0.5533 -9.8058 -0.4269 34 1 3.0079 -11.4411 0.2439 35 1 1.8804 -11.6120 -1.1387 36 1 2.9950 -11.5633 -2.9131 37 1 2.6349 -9.8846 -3.4262 38 1 4.9712 -9.3302 -3.6379 39 1 4.9530 -11.0282 -4.2135 40 1 6.6063 -10.3531 -2.1923 41 1 5.6744 -11.8776 -2.0773 42 1 5.2458 -9.2595 -0.6408 43 1 4.8833 -10.9211 -0.0944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:08 Heat of formation + Delta-G solvation = -160.682422 kcal Electronic energy + Delta-G solvation = -22124.833798 eV Core-core repulsion = 18747.906125 eV Total energy + Delta-G solvation = -3376.927673 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.63792 -39.75886 -36.75693 -35.77799 -33.54758 -32.48203 -31.25437 -30.50934 -29.08626 -27.04458 -25.71801 -23.31556 -21.96973 -21.53077 -21.01650 -19.92287 -19.70414 -17.34022 -16.85928 -16.36681 -16.18952 -15.83818 -15.70967 -15.27252 -14.46249 -14.28499 -14.18836 -13.74352 -13.48813 -13.23321 -12.85462 -12.27041 -12.24194 -12.02824 -11.98045 -11.75288 -11.44262 -11.40273 -11.33649 -11.14986 -10.97819 -10.92047 -10.82652 -10.65609 -10.63797 -10.32453 -10.00222 -9.87970 -9.75569 -9.50333 -9.16012 -8.34926 -5.98919 -4.03716 2.88272 3.09116 3.34878 3.39242 3.41677 3.50989 4.12478 4.22612 4.43155 4.47791 4.55220 4.67087 4.73976 4.90912 5.01026 5.10147 5.17454 5.24597 5.34537 5.36316 5.39690 5.42413 5.50223 5.53919 5.55097 5.61775 5.68869 5.71232 5.77787 5.85732 5.92976 5.98115 6.11626 6.17429 6.25471 6.69240 6.87669 6.99006 7.69222 7.76995 8.01001 8.29569 8.46052 9.03278 9.60097 11.12125 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028722 B = 0.002840 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.642531 B = 9855.848872 C =10449.914544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.457 3.543 12 O -0.508 6.508 13 O -0.360 6.360 14 C 0.071 3.929 15 C 0.079 3.921 16 H 0.081 0.919 17 C -0.149 4.149 18 C -0.142 4.142 19 C 0.097 3.903 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.139 4.139 24 O -0.349 6.349 25 H 0.262 0.738 26 H 0.026 0.974 27 H 0.025 0.975 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.247 -26.076 -1.863 27.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.141 4.141 11 C 0.301 3.699 12 O -0.395 6.395 13 O -0.278 6.278 14 C -0.004 4.004 15 C 0.021 3.979 16 H 0.099 0.901 17 C -0.187 4.187 18 C -0.180 4.180 19 C 0.057 3.943 20 C -0.155 4.155 21 C -0.162 4.162 22 C -0.160 4.160 23 C -0.177 4.177 24 O -0.268 6.268 25 H 0.072 0.928 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.737 -25.818 -2.019 27.028 hybrid contribution 0.225 0.686 0.212 0.752 sum 7.962 -25.132 -1.807 26.425 Atomic orbital electron populations 1.69986 1.06096 1.26839 1.49940 1.25022 0.94858 0.99315 0.95140 0.86598 0.79504 0.82886 0.78646 1.20146 1.21269 1.20173 1.21131 0.93056 0.90677 1.51809 0.92347 1.19010 0.93231 0.89279 0.98861 1.21753 1.00652 0.87648 1.04002 1.24774 0.87908 0.85729 0.71522 1.90627 1.15919 1.87739 1.45214 1.86595 1.41746 1.14720 1.84715 1.22926 0.92913 0.81440 1.03089 1.23187 0.93808 0.93103 0.87764 0.90109 1.23138 0.99369 0.93865 1.02289 1.23086 0.97448 0.98138 0.99315 1.22355 0.93640 0.82491 0.95810 1.22487 0.97951 1.01007 0.94025 1.22523 0.94479 1.01904 0.97328 1.22340 0.98804 1.00277 0.94560 1.22704 0.94673 1.02142 0.98185 1.88989 1.76196 1.25927 1.35696 0.92811 0.95585 0.95625 0.89018 0.88917 0.90105 0.90675 0.89714 0.89997 0.90316 0.90146 0.90593 0.90398 0.90986 0.91554 0.91537 0.91743 0.90417 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.04 9.11 -34.44 -0.31 -15.36 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.90 4.26 -27.89 -0.12 0.78 16 10 C -0.10 -2.19 5.75 -27.89 -0.16 -2.35 16 11 C 0.46 9.45 7.96 36.01 0.29 9.74 16 12 O -0.51 -11.95 15.73 -18.75 -0.29 -12.25 16 13 O -0.36 -6.39 10.22 -39.63 -0.41 -6.80 16 14 C 0.07 1.01 5.20 37.16 0.19 1.21 16 15 C 0.08 0.91 3.63 -25.65 -0.09 0.82 16 16 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 17 C -0.15 -1.25 6.60 -24.62 -0.16 -1.41 16 18 C -0.14 -1.07 6.26 -25.41 -0.16 -1.23 16 19 C 0.10 0.93 1.06 -89.76 -0.10 0.83 16 20 C -0.12 -1.01 6.04 -25.29 -0.15 -1.16 16 21 C -0.12 -1.02 6.91 -24.65 -0.17 -1.19 16 22 C -0.12 -0.92 6.84 -24.97 -0.17 -1.09 16 23 C -0.14 -1.21 6.28 -25.81 -0.16 -1.37 16 24 O -0.35 -4.57 10.46 -35.23 -0.37 -4.94 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 27 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 28 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 29 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 30 H 0.08 1.07 8.14 -51.92 -0.42 0.64 16 31 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.69 8.05 -51.93 -0.42 0.27 16 34 H 0.08 0.49 7.11 -51.93 -0.37 0.12 16 35 H 0.08 0.52 7.36 -51.93 -0.38 0.14 16 36 H 0.08 0.52 7.49 -51.93 -0.39 0.13 16 37 H 0.08 0.76 8.06 -51.93 -0.42 0.34 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.79 7.97 -51.93 -0.41 0.37 16 43 H 0.07 0.50 7.09 -51.93 -0.37 0.13 16 LS Contribution 348.73 15.07 5.26 5.26 Total: -1.00 -33.14 348.73 -8.84 -41.99 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -7.37 Total: -3.12 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -1.38 Total: -10.19 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.74 Total: -26.63 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -1.07 Total: -23.98 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.14 -8.84 -41.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.695 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds