Wall clock time and date at job start Tue Mar 31 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99849 * 2 1 4 4 H 1.48503 * 109.47108 * 240.00020 * 3 2 1 5 5 H 1.48495 * 109.47265 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46830 * 120.00413 * 3 2 1 7 7 C 1.37875 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99970 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46890 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46890 * 179.97438 * 10 9 7 12 12 O 1.20826 * 120.00162 * 0.27418 * 11 10 9 13 13 O 1.34234 * 120.00068 * 179.97438 * 11 10 9 14 14 C 1.45196 * 116.99938 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47070 * 180.02562 * 14 13 11 16 16 H 1.08997 * 110.53634 * 52.17173 * 15 14 13 17 17 C 1.55050 * 110.60004 * 174.99766 * 15 14 13 18 18 C 1.54954 * 102.10335 * 155.21446 * 17 15 14 19 19 C 1.53568 * 103.95167 * 339.13880 * 18 17 15 20 20 C 1.53734 * 110.21596 * 237.51466 * 19 18 17 21 21 C 1.55014 * 104.06401 * 216.53617 * 20 19 18 22 22 C 1.54929 * 102.81466 * 37.49569 * 21 20 19 23 23 C 1.53349 * 110.41848 * 119.32718 * 19 18 17 24 24 O 1.43142 * 107.94369 * 358.22941 * 19 18 17 25 25 H 0.97000 * 119.99706 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46859 * 60.00236 * 9 7 2 27 27 H 1.08999 * 109.46550 * 300.00119 * 9 7 2 28 28 H 1.08992 * 109.47456 * 60.00072 * 10 9 7 29 29 H 1.08999 * 109.47498 * 299.99387 * 10 9 7 30 30 H 1.09012 * 109.47257 * 300.00032 * 14 13 11 31 31 H 1.08996 * 109.47465 * 60.00089 * 14 13 11 32 32 H 1.08998 * 110.90646 * 273.41523 * 17 15 14 33 33 H 1.09002 * 110.90363 * 36.97697 * 17 15 14 34 34 H 1.08997 * 110.53060 * 97.75756 * 18 17 15 35 35 H 1.09007 * 110.52954 * 220.52455 * 18 17 15 36 36 H 1.09000 * 110.51104 * 335.18494 * 20 19 18 37 37 H 1.09001 * 110.51236 * 97.89587 * 20 19 18 38 38 H 1.09001 * 110.74773 * 279.15846 * 21 20 19 39 39 H 1.09005 * 110.89941 * 155.90042 * 21 20 19 40 40 H 1.09007 * 110.48776 * 203.67106 * 22 21 20 41 41 H 1.09000 * 110.59936 * 81.09132 * 22 21 20 42 42 H 1.08999 * 110.07381 * 239.14857 * 23 19 18 43 43 H 1.08999 * 110.07153 * 0.62959 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4918 -4.9671 0.0001 12 8 0.2836 -4.9671 -0.0045 13 8 2.1630 -6.1296 -0.0003 14 6 1.3722 -7.3473 -0.0002 15 6 2.3042 -8.5606 -0.0001 16 1 3.0335 -8.4825 0.8061 17 6 1.4899 -9.8740 0.1265 18 6 2.4420 -10.9104 -0.5218 19 6 3.3791 -10.0593 -1.3911 20 6 3.3108 -10.5216 -2.8557 21 6 4.7656 -10.3661 -3.3680 22 6 5.6095 -10.7913 -2.1404 23 6 4.8328 -10.2253 -0.9319 24 8 2.9662 -8.6934 -1.2779 25 1 -0.4850 0.8401 -0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5570 0.8897 28 1 2.8719 -3.6043 0.8894 29 1 2.8719 -3.6043 -0.8905 30 1 0.7436 -7.3723 0.8900 31 1 0.7431 -7.3721 -0.8900 32 1 1.3044 -10.1173 1.1727 33 1 0.5533 -9.8058 -0.4269 34 1 3.0079 -11.4411 0.2439 35 1 1.8804 -11.6120 -1.1387 36 1 2.9950 -11.5633 -2.9131 37 1 2.6349 -9.8846 -3.4262 38 1 4.9712 -9.3302 -3.6379 39 1 4.9530 -11.0282 -4.2135 40 1 6.6063 -10.3531 -2.1923 41 1 5.6744 -11.8776 -2.0773 42 1 5.2458 -9.2595 -0.6408 43 1 4.8833 -10.9211 -0.0944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:07 Heat of formation + Delta-G solvation = -179.607363 kcal Electronic energy + Delta-G solvation = -22125.654445 eV Core-core repulsion = 18747.906125 eV Total energy + Delta-G solvation = -3377.748320 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.65863 -41.11615 -37.92671 -36.93581 -35.66132 -33.33898 -33.12748 -31.52883 -29.73180 -28.39369 -27.28545 -24.52522 -23.51806 -22.38562 -21.68677 -21.43064 -20.62928 -19.10343 -18.24119 -17.93642 -17.29134 -17.02198 -16.85102 -16.48427 -16.19713 -15.38368 -15.12031 -14.88126 -14.38592 -14.31715 -14.14562 -13.92346 -13.78150 -13.32951 -12.97765 -12.80151 -12.74862 -12.56701 -12.51481 -12.18628 -12.06400 -12.01814 -11.98650 -11.78991 -11.77156 -11.63603 -11.42755 -11.41603 -11.27168 -11.24958 -10.58111 -10.57744 -8.20582 -6.34761 1.20756 1.42548 1.47296 1.54711 1.67169 2.42844 2.70390 3.12881 3.42019 3.57825 3.61678 3.81598 3.92356 3.93731 4.03976 4.15833 4.25027 4.26422 4.40241 4.42317 4.44141 4.52756 4.53272 4.73851 4.80170 4.85169 4.88122 4.91602 4.98674 5.01618 5.05532 5.07996 5.19075 5.24898 5.32899 5.35018 5.45710 5.48863 5.53541 5.79316 6.10291 6.12308 6.76510 6.84555 7.35427 8.91983 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028722 B = 0.002840 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.642531 B = 9855.848872 C =10449.914544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.077 0.923 9 C 0.040 3.960 10 C -0.095 4.095 11 C 0.465 3.535 12 O -0.544 6.544 13 O -0.355 6.355 14 C 0.064 3.936 15 C 0.079 3.921 16 H 0.087 0.913 17 C -0.143 4.143 18 C -0.136 4.136 19 C 0.085 3.915 20 C -0.118 4.118 21 C -0.127 4.127 22 C -0.119 4.119 23 C -0.139 4.139 24 O -0.383 6.383 25 H 0.264 0.736 26 H -0.011 1.011 27 H -0.008 1.008 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.199 -27.651 -1.404 29.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.095 0.905 9 C 0.002 3.998 10 C -0.132 4.132 11 C 0.310 3.690 12 O -0.434 6.434 13 O -0.272 6.272 14 C -0.010 4.010 15 C 0.022 3.978 16 H 0.105 0.895 17 C -0.181 4.181 18 C -0.173 4.173 19 C 0.046 3.954 20 C -0.156 4.156 21 C -0.165 4.165 22 C -0.156 4.156 23 C -0.177 4.177 24 O -0.303 6.303 25 H 0.073 0.927 26 H 0.007 0.993 27 H 0.010 0.990 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.125 0.875 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.074 0.926 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.725 -27.429 -1.560 29.144 hybrid contribution -0.396 1.089 0.037 1.160 sum 9.329 -26.340 -1.523 27.985 Atomic orbital electron populations 1.70155 1.08238 1.28049 1.51103 1.26115 0.95759 1.03896 0.94417 0.85347 0.78051 0.77205 0.79497 1.18786 1.21179 1.18643 1.21615 0.94100 0.91318 1.51407 0.90506 1.18787 0.93629 0.91889 0.95464 1.21515 0.99393 0.86164 1.06106 1.24518 0.87164 0.86571 0.70719 1.90616 1.17394 1.88358 1.47069 1.86560 1.41801 1.14951 1.83897 1.23298 0.93709 0.80842 1.03164 1.23262 0.93930 0.93030 0.87607 0.89548 1.23158 0.98966 0.92121 1.03831 1.23111 0.96965 0.97712 0.99540 1.22644 0.94598 0.81334 0.96825 1.22542 0.97755 1.01894 0.93369 1.22535 0.94571 1.01006 0.98374 1.22350 0.98369 1.01408 0.93499 1.22715 0.94126 1.01569 0.99306 1.88958 1.76638 1.28384 1.36349 0.92693 0.99300 0.98992 0.86522 0.87019 0.88946 0.91775 0.87520 0.90217 0.88384 0.88691 0.88249 0.92308 0.93205 0.89992 0.91603 0.89749 0.92585 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.01 13.29 21.45 0.28 -58.73 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 3 Si 0.98 44.34 29.54 68.60 2.03 46.37 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.55 -31.26 9.11 25.60 0.23 -31.03 16 8 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 9 C 0.04 2.21 4.26 29.85 0.13 2.34 16 10 C -0.09 -4.03 5.75 29.85 0.17 -3.86 16 11 C 0.46 19.54 7.96 71.24 0.57 20.10 16 12 O -0.54 -26.56 15.73 21.96 0.35 -26.21 16 13 O -0.36 -12.59 10.22 -51.11 -0.52 -13.11 16 14 C 0.06 1.82 5.20 71.98 0.37 2.19 16 15 C 0.08 1.75 3.63 31.30 0.11 1.87 16 16 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 17 C -0.14 -2.10 6.60 31.96 0.21 -1.88 16 18 C -0.14 -1.64 6.26 31.45 0.20 -1.45 16 19 C 0.09 1.50 1.06 -10.24 -0.01 1.49 16 20 C -0.12 -1.89 6.04 31.53 0.19 -1.70 16 21 C -0.13 -1.95 6.91 31.94 0.22 -1.73 16 22 C -0.12 -1.56 6.84 31.73 0.22 -1.35 16 23 C -0.14 -2.18 6.28 31.19 0.20 -1.98 16 24 O -0.38 -9.95 10.46 -148.98 -1.56 -11.51 16 25 H 0.26 15.62 8.31 -92.71 -0.77 14.84 16 26 H -0.01 -0.71 8.10 -2.39 -0.02 -0.73 16 27 H -0.01 -0.52 8.10 -2.39 -0.02 -0.53 16 28 H 0.12 4.39 8.14 -2.39 -0.02 4.37 16 29 H 0.11 4.34 8.14 -2.39 -0.02 4.32 16 30 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.06 1.97 8.13 -2.39 -0.02 1.95 16 32 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.21 8.05 -2.39 -0.02 1.19 16 34 H 0.10 0.83 7.11 -2.39 -0.02 0.81 16 35 H 0.09 0.90 7.36 -2.38 -0.02 0.88 16 36 H 0.10 1.09 7.49 -2.39 -0.02 1.08 16 37 H 0.06 1.15 8.06 -2.39 -0.02 1.13 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 1.11 7.97 -2.39 -0.02 1.09 16 43 H 0.09 1.01 7.09 -2.39 -0.02 0.99 16 Total: -1.00 -73.94 348.73 4.81 -69.12 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.97 Total: 10.83 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 3.27 Total: -16.76 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 0.28 Total: -58.73 kcal Atomic # 8 Polarization: -49.10 SS G_CDS: -1.74 Total: -50.83 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -73.94 4.81 -69.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.484 kcal (2) G-P(sol) polarization free energy of solvation -73.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds